mRNA_P-littoralis_Contig146.77.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.77.1
Unique NamemRNA_P-littoralis_Contig146.77.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig146.77.1 vs. uniprot
Match: D7FUT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT3_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 1.350e-114
Identity = 232/404 (57.43%), Postives = 266/404 (65.84%), Query Frame = 2 
Query:  152 MVQTTKGGEKSGGT-PADPLGAEVSLDLAEELFVSCRFTEAASVCVDALS--ASSTSTAARNDGRRS-------SIPASELADSALVVAFDDQVIAPVGECETSDLIVAVLLQCGFELRRTEEWRRCRAFYGEGGAMPFAVATLWLRLRLAGGEFELVRRVLWQLRAALGEELAHHTTTTVDADNMGAGDSYISTTTKVVALANYAEATEMLVVQIMLPCRESVEASELVSKDTHLGIEDKVRLLNECELSAIRIAEQQGSGI---TAGGGARRSAGSTHAAG-GGDSHSHQGRARRAST-GRPENNGHTNFDRLETPADGSRTARHEQXXXXXXQWSVLEFLPDVSDWTPEARIQLVVGAGTAGLAAYAALRHRGSLWRAARNAAGVAARTAGDIGAFIVGSS 1318
            MVQ TK  EK G T  AD    E  LDLAEELFVSCRFTEAA VC   L   +S TS+  RN    S       S  + + A SALVVAFDDQVIAPVGEC TSDLIVAVLLQCGFEL+RTEEW RCRAFYG   A+PFAVA LWLRLRLAGGE ELVRR+LWQLRA LGEE+    T  V A+N     ++    T   A+ANY+EATEMLVVQIM+PC E  EA  LVS D +L  +DK +LL  CE SA     + G+     + G  +  ++GS    G GG SHS      R  T G P+ +G T  +   +P +      H+Q      Q  + +F  DVSDWTPEAR+QLVVGAG AGLAAYAALR+R SLWRAARNAAGVAARTAGD+GAFIVGSS
Sbjct:    1 MVQMTKPAEKCGETLDADAFDQEAKLDLAEELFVSCRFTEAARVCSAVLGEGSSCTSSPRRNFSSTSTXXXXXTSSGSHDPAGSALVVAFDDQVIAPVGECGTSDLIVAVLLQCGFELQRTEEWGRCRAFYGTTRAIPFAVAILWLRLRLAGGELELVRRILWQLRAELGEEV-RRCTPAVTANNSDFERAHSGAVTP--AVANYSEATEMLVVQIMVPCGEFTEAEALVSSDAYLSPKDKSQLLKACEQSASERERESGAATGEGSTGNASNTASGSRSPCGRGGPSHSSYREDYREETKGGPQRDGRTRLEHSSSPDELGAAFCHQQRQQQ--QSPLQKFFSDVSDWTPEARVQLVVGAGAAGLAAYAALRNRDSLWRAARNAAGVAARTAGDVGAFIVGSS 399
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BLAST of mRNA_P-littoralis_Contig146.77.1 vs. uniprot
Match: A0A6H5K3P0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3P0_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 1.630e-103
Identity = 220/407 (54.05%), Postives = 262/407 (64.37%), Query Frame = 2 
Query:  152 MVQTTKGGEKSGGT-PADPLGAEVSLDLAEELFVSCRFTEAASVCVDALSASSTSTAARNDGRRSSIP--------ASELADSALVVAFDDQVIAPVGECETSDLIVAVLLQCGFELRRTEEWRRCRAFYGEGGAMPFAVATLWLRLRLAGGEFELVRRVLWQLRAALGEELAHHT-TTTVDADNMGAGDSYISTTTKVVALANYAEATEMLVVQIMLPCRESVEASELVSKDTHLGIEDKVRLLNECELSAIRIAEQQGSGITAGGGARRSAGSTHAAG------GGDSHS-HQGRARRASTGRPENNGHTNFDRLETP-ADGSRTARHEQXXXXXXQWSVLEFLPDVSDWTPEARIQLVVGAGTAGLAAYAALRHRGSLWRAARNAAGVAARTAGDIGAFIVGSS 1318
            MVQ  K  E    T   D +  E  LDLAEELFVSCRFTEAA++C  ALS  S+ T+  ++   +           + + A SALVVA  D VIAPVGEC TSDLIVAVLLQCGFEL+RTEEW RCRAFYG   A+PFAVA LWLRLRLAGGE ELVR+ L QLRA LGEE+   T T T +  +    DS   T     ALANY+EATEMLVVQI++PC E  EA  LVS D +L  +DK +LL  CE SA     ++ SG  AG GA  +A +T A        GG  HS ++G  R  + G P+ +  T  + L +P A G+   R ++      Q  + +F  DVSDWTPEAR+QL V AG AGLAAYAALR+R SLWRAAR+ AGVAARTAGD+GAFIVGSS
Sbjct:    1 MVQVAKRAENCRETLDVDDIDQEAKLDLAEELFVSCRFTEAATICSTALSEDSSYTSPNSNFSSTXXXXXXXXXXGSHDSAGSALVVAIGDHVIAPVGECGTSDLIVAVLLQCGFELQRTEEWARCRAFYGTTRAVPFAVAILWLRLRLAGGELELVRKNLSQLRAVLGEEVRRCTPTVTANNSDFQRADSRAVTQ----ALANYSEATEMLVVQILVPCGEFTEAVALVSSDDYLSPKDKSQLLKACEQSASE--RERESGALAGEGATGNASNTPARSRSPCGRGGPLHSSYRGDCREETAGGPQRDRRTRLENLSSPDALGAAFCRQQRQQQ---QSPLQKFFSDVSDWTPEARVQLAVRAGAAGLAAYAALRNRDSLWRAARSVAGVAARTAGDVGAFIVGSS 398
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BLAST of mRNA_P-littoralis_Contig146.77.1 vs. uniprot
Match: A0A835YP76_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP76_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.470e-18
Identity = 69/203 (33.99%), Postives = 100/203 (49.26%), Query Frame = 2 
Query:  224 LDLAEELFVSCRFTEAASVCVDALSASSTSTAARNDGRRSSIPASELADSALVVAFDDQVIAPVGECETSDLIVAVLLQCGFELRRTEEWRRCRAFYGEGGA---MPFAVATLWLRLRLAGGEFELVRRVLWQLRAALGEELAHHTTTTVDADNMGAGDSYISTTTKVVALANYAEATEMLVVQIMLPCRESVEASELVSKDT 823
            LD AE   VSCRF EA+S+C + L A+        DG  +S P S  + S L +      +A + EC   D ++AVLLQCGFEL R  E+R C ++Y        +P A+A LWL+LRL  GE E  R+ L  +R AL ++ +                             +YA+ +EMLV  ++LP  +   A  ++S+ T
Sbjct:    3 LDAAEAALVSCRFAEASSLCREHLEAT-----LHPDGNGTSTPVSSSSTS-LHLGDLSVAVADLQEC---DQLIAVLLQCGFELGRKNEYRFCHSYYKSRALKHPIPLAIALLWLKLRLEEGELEFTRQALQDMRTALRDDPS--------------------------GTHSYAQISEMLVADVLLPAGDFAAAKHVLSEST 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUT3_ECTSI1.350e-11457.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3P0_9PHAE1.630e-10354.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YP76_9STRA2.470e-1833.99Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:280013..282746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1708
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001000.1
Cds size1209
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789687.8242626-UTR-P-littoralis_Contig146:280012..2801241680789687.8242626-UTR-P-littoralis_Contig146:280012..280124Pylaiella littoralis U1_48UTRP-littoralis_Contig146 280013..280124 +
1680789687.8565302-UTR-P-littoralis_Contig146:282359..2827461680789687.8565302-UTR-P-littoralis_Contig146:282359..282746Pylaiella littoralis U1_48UTRP-littoralis_Contig146 282360..282746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789687.8351758-CDS-P-littoralis_Contig146:280124..2805671680789687.8351758-CDS-P-littoralis_Contig146:280124..280567Pylaiella littoralis U1_48CDSP-littoralis_Contig146 280125..280567 +
1680789687.8452866-CDS-P-littoralis_Contig146:281593..2823591680789687.8452866-CDS-P-littoralis_Contig146:281593..282359Pylaiella littoralis U1_48CDSP-littoralis_Contig146 281594..282359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.77.1prot_P-littoralis_Contig146.77.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 280125..282359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.77.1

>prot_P-littoralis_Contig146.77.1 ID=prot_P-littoralis_Contig146.77.1|Name=mRNA_P-littoralis_Contig146.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=403bp
MLNWQLARTTSCRMVQTTKGGEKSGGTPADPLGAEVSLDLAEELFVSCRF
TEAASVCVDALSASSTSTAARNDGRRSSIPASELADSALVVAFDDQVIAP
VGECETSDLIVAVLLQCGFELRRTEEWRRCRAFYGEGGAMPFAVATLWLR
LRLAGGEFELVRRVLWQLRAALGEELAHHTTTTVDADNMGAGDSYISTTT
KVVALANYAEATEMLVVQIMLPCRESVEASELVSKDTHLGIEDKVRLLNE
CELSAIRIAEQQGSGITAGGGARRSAGSTHAAGGGDSHSHQGRARRASTG
RPENNGHTNFDRLETPADGSRTARHEQQQQQQQQWSVLEFLPDVSDWTPE
ARIQLVVGAGTAGLAAYAALRHRGSLWRAARNAAGVAARTAGDIGAFIVG
SS*
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mRNA from alignment at P-littoralis_Contig146:280013..282746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.77.1 ID=mRNA_P-littoralis_Contig146.77.1|Name=mRNA_P-littoralis_Contig146.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2734bp|location=Sequence derived from alignment at P-littoralis_Contig146:280013..282746+ (Pylaiella littoralis U1_48)
AGGGAATGTGGGAATGTACGAAAGGGGGAGAAAAAAGCCTGATATCTTCT
CGTGAGAACTCGCAGACGTCTCAAACGATGGCTAGTAAGCTGCAAAACTG
CTGAACGCCTGAATGCTCAACTGGCAACTCGCTCGAACAACATCTTGTAG
GATGGTCCAGACTACGAAAGGTGGAGAAAAGAGTGGGGGTACACCTGCTG
ATCCTCTTGGCGCGGAGGTAAGCCTCGACTTGGCTGAGGAACTGTTCGTC
TCCTGCCGTTTTACCGAAGCTGCAAGTGTCTGCGTTGACGCCCTGAGCGC
TAGTTCAACCTCCACCGCGGCCCGCAATGATGGCCGTAGGAGCAGCATAC
CCGCAAGCGAACTGGCTGACTCGGCTCTGGTGGTGGCCTTTGACGATCAA
GTTATCGCGCCTGTTGGAGAGTGCGAAACGTCCGACCTTATCGTGGCGGT
GCTGCTTCAGTGTGGGTTTGAGCTCCGACGGACAGAAGAGTGGCGAAGAT
GTCGAGCTTTCTACGGCGAAGGGGGCGCAATGCCTTTCGCCGTGGCCACA
TTATGGTAAGAACAGCTGCTGTAACCAGCTCACAGACAACAGTTGTTGTG
TGCTCCGTCTCGGTAGTTGTTGTTTGTTCTACGCTGATTCGTCGTGTCAT
GTCCAAGCTCATGTATTATCTGCGGAATGTTGCCACGACCGCTTGTGCGG
GTAGTTTCTGAGATTGGGAAGGATGGATACCTTGTCATGAGGAGGAACGA
AGATGTGCACCGGTATGAGTCTGTACGTGAACGATATGAAGTGAAGAAGG
GAGAGTAAGAGAAGCACAGCTGCAGGATGACGCAAAGCGCTGTTTTTGCG
AGAGAGCTGTTTGCAAAATGGGAGTCAAAGGACACCATTTGTATGTCGAT
TTCTCCAGCATCCAGCATACTACTGCTGTATCGCAACTTCATAATTCGCC
ACGGCAAGTAGGATACCCAACACCCGTTGTACTCAGTACTCAACGAACAC
CACCCCGCGGCCCGCAGCGATCTTGGTGCAACGAGCTGAGGACCAGACTC
AGCGCTTCAGACTGTGAATTCCGACGGCCCTGCTTTACCTGCGTCTGCTA
GGGTGTGGGCTGGCCCACGAGAGCAAACTAACTTCAAAGGAGATTTATCT
GCAGGCTCTGTCTGTGTAAAGCATGGTCGCCATCCAGTGAACCCTGACAT
GCTGTACTGTCGACCTTTGTCGAAGATAATGTTGAGGAAGCAGAAGGGGC
TCTGGGCCTGCGTATTCCTATGGAGTCCGGGGTCGTTGATCAACGGCTGC
GCACTGACGACTCAATCGAATATTTCAGAGGAATTGGTGCTTTTCAACAT
TTTGCTCGGCGAAAAGTTGGCCGTATGCCTGGGTTTACTGCTGTACACTA
TCGAAGTCAATCCCGGCGCCTTTCATGATGCATGAACGGCCAGGATCTCG
ATGCTTCTTTTGTTACAGCTGCCATGCCTGTCCGACAACGTCGACCGGCA
ATTGCTGTTTCCATTTTTCGATCGTTGTTGCGCATCCCGAACACGTACTG
CGAATGCATACATTTTTTATGAACCAACCAGGCTTCGTTTGCGTCTGGCG
GGGGGGGAGTTCGAGCTCGTCCGCAGGGTCCTCTGGCAGCTTAGAGCAGC
TCTTGGAGAGGAATTGGCACACCACACAACAACCACCGTCGACGCCGACA
ACATGGGGGCAGGAGACAGCTATATTAGCACAACAACGAAGGTAGTAGCC
CTAGCCAACTACGCGGAAGCAACGGAGATGCTGGTCGTCCAGATAATGCT
CCCTTGCAGAGAATCCGTCGAAGCCTCGGAGCTTGTCTCTAAAGACACCC
ACCTCGGAATAGAGGACAAGGTTCGCCTTCTGAATGAGTGCGAGCTATCC
GCGATCCGGATAGCGGAGCAGCAGGGATCGGGCATCACGGCGGGAGGAGG
CGCAAGAAGAAGTGCCGGCAGCACTCATGCTGCCGGTGGCGGTGACTCTC
ATTCGCACCAGGGGCGCGCGAGACGAGCATCAACGGGAAGGCCGGAAAAC
AATGGGCACACGAATTTCGACAGATTGGAGACTCCAGCAGACGGCAGTCG
TACAGCTCGACATGAGCAGCAGCAGCAGCAGCAGCAGCAGTGGTCGGTAC
TTGAATTTCTGCCGGATGTGTCGGACTGGACGCCGGAAGCCCGAATACAG
CTGGTGGTAGGTGCGGGGACGGCGGGTCTGGCGGCATACGCAGCGTTGCG
ACATCGAGGCTCTCTTTGGCGCGCAGCGCGCAATGCCGCAGGCGTGGCGG
CTCGAACGGCTGGAGATATAGGGGCGTTTATCGTCGGCTCGTCGTGAGTC
GTTTCGTAGTTTCTGACTAGAATATGGGCTGAAGGCATTCCAAGCCAATA
TTAGGTTGATAAGACCACGGAGAATCTGCAAGAATGGACGAAAATGTGTA
CTTCGGGAGGCGTGTCGCATCCGGTAGCAAGTTTAAAATAGGAGTGCGGG
GTTAACGAGAAAGTTTTATTTTGGCAGTTCATGAAAAGTACTTCGAATAA
CGTATCGCCTCTTGCGGGGCTGCTGTTAATATTTCCAAAACTCGATGAGA
AACCAGCTGCAACTGCGTCGAATCCGTGTGTCGATTGGTGCTGTAGCCAT
GGTGTGAGTGCCGGATCGGGTAACGAAAGCGCATCTCCGATCCGTCGACC
GCATGTTTCAGGCTGGAATTGCTGCTTTGACTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:280013..282746+

>mRNA_P-littoralis_Contig146.77.1 ID=mRNA_P-littoralis_Contig146.77.1|Name=mRNA_P-littoralis_Contig146.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1209bp|location=Sequence derived from alignment at P-littoralis_Contig146:280013..282746+ (Pylaiella littoralis U1_48)
ATGCTCAACTGGCAACTCGCTCGAACAACATCTTGTAGGATGGTCCAGAC
TACGAAAGGTGGAGAAAAGAGTGGGGGTACACCTGCTGATCCTCTTGGCG
CGGAGGTAAGCCTCGACTTGGCTGAGGAACTGTTCGTCTCCTGCCGTTTT
ACCGAAGCTGCAAGTGTCTGCGTTGACGCCCTGAGCGCTAGTTCAACCTC
CACCGCGGCCCGCAATGATGGCCGTAGGAGCAGCATACCCGCAAGCGAAC
TGGCTGACTCGGCTCTGGTGGTGGCCTTTGACGATCAAGTTATCGCGCCT
GTTGGAGAGTGCGAAACGTCCGACCTTATCGTGGCGGTGCTGCTTCAGTG
TGGGTTTGAGCTCCGACGGACAGAAGAGTGGCGAAGATGTCGAGCTTTCT
ACGGCGAAGGGGGCGCAATGCCTTTCGCCGTGGCCACATTATGGCTTCGT
TTGCGTCTGGCGGGGGGGGAGTTCGAGCTCGTCCGCAGGGTCCTCTGGCA
GCTTAGAGCAGCTCTTGGAGAGGAATTGGCACACCACACAACAACCACCG
TCGACGCCGACAACATGGGGGCAGGAGACAGCTATATTAGCACAACAACG
AAGGTAGTAGCCCTAGCCAACTACGCGGAAGCAACGGAGATGCTGGTCGT
CCAGATAATGCTCCCTTGCAGAGAATCCGTCGAAGCCTCGGAGCTTGTCT
CTAAAGACACCCACCTCGGAATAGAGGACAAGGTTCGCCTTCTGAATGAG
TGCGAGCTATCCGCGATCCGGATAGCGGAGCAGCAGGGATCGGGCATCAC
GGCGGGAGGAGGCGCAAGAAGAAGTGCCGGCAGCACTCATGCTGCCGGTG
GCGGTGACTCTCATTCGCACCAGGGGCGCGCGAGACGAGCATCAACGGGA
AGGCCGGAAAACAATGGGCACACGAATTTCGACAGATTGGAGACTCCAGC
AGACGGCAGTCGTACAGCTCGACATGAGCAGCAGCAGCAGCAGCAGCAGC
AGTGGTCGGTACTTGAATTTCTGCCGGATGTGTCGGACTGGACGCCGGAA
GCCCGAATACAGCTGGTGGTAGGTGCGGGGACGGCGGGTCTGGCGGCATA
CGCAGCGTTGCGACATCGAGGCTCTCTTTGGCGCGCAGCGCGCAATGCCG
CAGGCGTGGCGGCTCGAACGGCTGGAGATATAGGGGCGTTTATCGTCGGC
TCGTCGTGA
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