mRNA_P-littoralis_Contig146.48.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Match: D7FSJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ6_ECTSI) HSP 1 Score: 217 bits (553), Expect = 2.140e-66 Identity = 130/227 (57.27%), Postives = 158/227 (69.60%), Query Frame = 1
Query: 1 GKPRKNSTDE-AIPAEVVLALRATLTLVRVDRNSSTPFKFGPRENDVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXVGT-AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFRDPDHEVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGKNAVR 675
G ++ DE AIPA+ +L R + +V V R+S+ PF F + ADL+ MD ED E G + S TGS XXXXXXXXXXXXX G+ ERKGPHCMMRLVGIL ED +RPLLIDSR QA R +LD S VG R+++W ++RFRDPDH+VR+IVD E V H DPN+I QPNIS+EKL+KMWA K +WN +ANW+G SGNNQPW+ FCQGK VR
Sbjct: 50 GSEQEEGEDEGAIPAKALLMFRGVVKMVAVARDSTEPFTFEGVDYSAADLYDAMDKEDEEELGDFGDSAGGSAPTGSXXXXXXXXXXXXXXXXXSGSNTERKGPHCMMRLVGILCEDFIRPLLIDSRFQATRQELDTSTVGPRNDLWTEVTDRFRDPDHKVRKIVDDEQVNHVDPNIIQQPNISSEKLTKMWAVGKGRWNPSYANWKGESGNNQPWLAFCQGKGWVR 276
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI) HSP 1 Score: 204 bits (520), Expect = 8.800e-60 Identity = 123/220 (55.91%), Postives = 149/220 (67.73%), Query Frame = 1
Query: 10 RKNSTDE---AIPAEVVLALRATLTLVRVDRNSSTPFKFGPRENDVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXVGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFRDPDHEVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQG 660
R DE AIPA+ +L R + +V + R+S+ PF+ E VADL+ + ED EA XXXXXXXXXXXX ERKGPHCMMRLVGIL ED +RPLLI+SRLQA R LD S+VG R+E+W + RFRDPDH+VR+IVD E V+H DPN+I QPNISAEKLS+MWA KAKWNQP+A+W+ SGNNQPW++FCQG
Sbjct: 81 RNGEEDEEEGAIPAKALLTFRNVVGMVAIARDSNVPFQVDNVEYSVADLYDALAKED--EAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSNTERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQVRKIVDDEQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYADWKSESGNNQPWLSFCQG 298
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Match: D7FU69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU69_ECTSI) HSP 1 Score: 207 bits (526), Expect = 9.000e-60 Identity = 126/221 (57.01%), Postives = 153/221 (69.23%), Query Frame = 1
Query: 10 RKNSTDE---AIPAEVVLALRATLTLVRVDRNSSTPFKFGPRENDVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXVGT-AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFRDPDHEVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQG 660
R DE AIPA+ +L R + +V + R+S+ PF+ E VADL+ + ED A +G XXXXXXXXXXXXX G+ ERKGPHCMMRLVGIL ED +RPLLI+SRLQA R LD S+VG R+E+W + RFRDPDH+VR+IVD E V+H DPN+I QPNISAEKLS+MWA KAKWNQP+ANW+ SGNNQPW++FCQG
Sbjct: 204 RNGEEDEEEGAIPAKALLTFRNVVGMVAIARDSNVPFQVDNVEYSVADLYDALAKEDE---AGKGNSXXXXXXXXXXXXXXXXXXXXXXXXXXSGSNTERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQVRKIVDDEQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYANWKSESGNNQPWLSFCQG 421
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Match: A0A6H5L680_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L680_9PHAE) HSP 1 Score: 193 bits (490), Expect = 5.960e-58 Identity = 104/195 (53.33%), Postives = 136/195 (69.74%), Query Frame = 1
Query: 76 LVRVDRNSSTPFKFGPRENDVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXVGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFRDPDHEVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQG 660
+V + +S+ P + VADL+ M+ ED E A GGS+ +G++ S GG XXXXX T ERKGPHCMMRLVGIL ED +RPL+++SRLQA R +LD SA G R+ +W ++RFRDP + VR++VD E V+H +PN+I QPNISAEK++KMW+ KAKWN P ANW+ SGNNQPW++FCQG
Sbjct: 1 MVALACDSTKPLTVEGVDYSVADLYNAMEKEDQTELADSAGGSAPTGSS-STGGAVGPDGXXXXXGSGSNT-ERKGPHCMMRLVGILCEDSIRPLVMNSRLQATRQELDTSAGGPRNNLWTEVTDRFRDPGYHVRKVVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPFANWKSESGNNQPWLSFCQG 193
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Match: A0A6H5JZX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX9_9PHAE) HSP 1 Score: 200 bits (508), Expect = 3.270e-57 Identity = 117/221 (52.94%), Postives = 150/221 (67.87%), Query Frame = 1
Query: 1 GKPRKNSTDEAIPAEVVLALRATLTLVRVDRNSSTPFKFGPRENDVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXVGT-AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFRDPDHEVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQG 660
G ++ + IPA+ +L R + +V + R+ + PF + VADL+ M+ E+ E E A G XXXXXXXXXXXXX G+ ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD SAVG R +W ++RFRDP H VR+IVD E V+H +PN+I QPNISAEK++KMW+ KAKWN P+ANW+ SGNNQPW++FCQG
Sbjct: 107 GSEQEEGEEGVIPAKALLMFRGVINMVALARDRTEPFTVEGVDYSVADLYDAMEKENTPEL--------EDSAGGXXXXXXXXXXXXXXXXXXSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHHVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKSESGNNQPWLSFCQG 319
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Match: A0A6H5J7W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7W8_9PHAE) HSP 1 Score: 199 bits (505), Expect = 7.630e-57 Identity = 116/221 (52.49%), Postives = 150/221 (67.87%), Query Frame = 1
Query: 1 GKPRKNSTDEAIPAEVVLALRATLTLVRVDRNSSTPFKFGPRENDVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXVGT-AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFRDPDHEVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQG 660
G ++ + IPA+ +L R + +V + R+ + PF + VADL+ M+ E+ E E A G XXXXXXXXXXXXX G+ ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD SAVG R +W ++RFRDP H VR+IVD E V+H +PN+I QPNISAEK++K+W+ KAKWN P+ANW+ SGNNQPW++FCQG
Sbjct: 269 GSEQEEGEEGVIPAKALLMFRGVINMVALARDRTEPFTVEGVDYSVADLYDAMEKENTPEL--------EDSAGGXXXXXXXXXXXXXXXXXXSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHHVRKIVDDEQVSHVNPNIIQQPNISAEKITKVWSAAKAKWNTPYANWKSESGNNQPWLSFCQG 481
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE) HSP 1 Score: 202 bits (514), Expect = 1.740e-56 Identity = 121/225 (53.78%), Postives = 150/225 (66.67%), Query Frame = 1
Query: 1 GKPRKNSTDE-----AIPAEVVLALRATLTLVRVDRNSSTPFKFGPRENDVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXVGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFRDPDHEVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQG 660
GK +++ +E AIPA+ +L R + +V + R+S PFK E DL+ + ED EA XXXXXXXXXXXX ERKGPHCMMRLVGIL ED +RPLLI+SRLQA R LD S+VG R+++W + RFRDPDH+VR+IVD + V+H DPN+I QPNISAEKLS+MWA KAKWNQP+ANW+ SGNNQPW++FCQG
Sbjct: 311 GKSGRSNGEEDEEEGAIPAKALLTFRNVVGMVAIARDSKVPFKVDNVEYSAVDLYDALAKED--EAGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSNTERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNDLWTEVTTRFRDPDHQVRKIVDDQQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYANWKSESGNNQPWLSFCQG 533
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Match: A0A6H5K6G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G9_9PHAE) HSP 1 Score: 195 bits (495), Expect = 1.180e-55 Identity = 120/218 (55.05%), Postives = 145/218 (66.51%), Query Frame = 1
Query: 1 GKPRKNSTDE-----AIPAEVVLALRATLTLVRVDRNSSTPFKFGPRENDVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXVGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFRDPDHEVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQP 639
GK +++ +E AIPA+ L R +V + R+S PFK E ADLF + ED A GGS+ +G GS XXXXXXXXXXXX ER GPHCMMRLVGIL ED +RPLL +SRLQA R LD S+VG R+++W + RFRDPDH+VR+IVD E V+H DPN+I Q ISAEKLS+MWA KAKWNQP+ANW+ SGNNQP
Sbjct: 244 GKSGRSNGEEDEEEGAIPAKAFLTFRNVFGMVAIARDSKEPFKVDNVEYSAADLFDALAEEDEAATADSAGGSAPTG--GSSXXXXXXXXXXXXXXXSGSNTERNGPHCMMRLVGILCEDVIRPLLTESRLQATRQDLDTSSVGPRNDLWTEVTARFRDPDHQVRKIVDDEQVSHVDPNIIQQSTISAEKLSRMWATAKAKWNQPYANWKSESGNNQP 459
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Match: A0A6H5KFU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU0_9PHAE) HSP 1 Score: 196 bits (497), Expect = 1.290e-54 Identity = 115/221 (52.04%), Postives = 148/221 (66.97%), Query Frame = 1
Query: 1 GKPRKNSTDEAIPAEVVLALRATLTLVRVDRNSSTPFKFGPRENDVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXVGT-AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFRDPDHEVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQG 660
G ++ + IPA+ +L R + +V + R+ + PF + V DL+ M+ E+ E E A G XXXXXXXXXXXXX G+ ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD SAVG R +W ++RFRDP H VR+IVD E V+H +PN+I QPNISAEK++KMW+ KAKWN P+ANW+ SGNNQPW++F QG
Sbjct: 269 GSEQEEGEEGVIPAKALLMFRGVINMVALARDRTEPFTVEGMDYSVTDLYDAMEKENTPEL--------EDSAGGXXXXXXXXXXXXXXXXXXSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHHVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKSESGNNQPWLSFAQG 481
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Match: A0A6H5KNY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY9_9PHAE) HSP 1 Score: 192 bits (489), Expect = 1.730e-54 Identity = 116/222 (52.25%), Postives = 148/222 (66.67%), Query Frame = 1
Query: 1 GKPRKNSTDE-AIPAEVVLALRATLTLVRVDRNSSTPFKF-GPRENDVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXVGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLDASAVGSRSEVWQVASERFRDPDHEVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQG 660
G ++ +E AIPA +L R + +V + R+S+ PF G + VADL+ M+ ED E +S XXXXXXXXXXXX ERKGPHCMMRLVG+L ED +RPL+I+SRLQA R +LD SAVG R +W ++RFRDP H VR VD E+V+H +PN+I QPNISAEK++KMW+ KAKWN P+ANW+ SGNNQPW++FCQG
Sbjct: 111 GSEQEEGEEEGAIPASALLMFRGVVNMVALARDSTEPFTVEGVDYSSVADLYDAMEKEDKPEL-------EDSAGXXXXXXXXXXXXXXXXXXXSGNITERKGPHCMMRLVGMLCEDSIRPLVINSRLQATRQELDNSAVGPRKHLWTEVTDRFRDPRHNVRISVDDELVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKRESGNNQPWLSFCQG 325 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig146.48.1 >prot_P-littoralis_Contig146.48.1 ID=prot_P-littoralis_Contig146.48.1|Name=mRNA_P-littoralis_Contig146.48.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp MDAEDAVEAAAEGGGSSESGATGSCGGTAAGAGGGGAAGAGVGTAERKGPback to top mRNA from alignment at P-littoralis_Contig146:178907..180016+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig146.48.1 ID=mRNA_P-littoralis_Contig146.48.1|Name=mRNA_P-littoralis_Contig146.48.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1110bp|location=Sequence derived from alignment at P-littoralis_Contig146:178907..180016+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig146:178907..180016+ >mRNA_P-littoralis_Contig146.48.1 ID=mRNA_P-littoralis_Contig146.48.1|Name=mRNA_P-littoralis_Contig146.48.1|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig146:178907..180016+ (Pylaiella littoralis U1_48)back to top |