mRNA_P-littoralis_Contig146.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.44.1
Unique NamemRNA_P-littoralis_Contig146.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:173342..174368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size223
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_000740.1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.942649-CDS-P-littoralis_Contig146:173341..1735221680789686.942649-CDS-P-littoralis_Contig146:173341..173522Pylaiella littoralis U1_48CDSP-littoralis_Contig146 173342..173522 +
1680789686.9576175-CDS-P-littoralis_Contig146:174327..1743681680789686.9576175-CDS-P-littoralis_Contig146:174327..174368Pylaiella littoralis U1_48CDSP-littoralis_Contig146 174328..174368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.44.1prot_P-littoralis_Contig146.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 173342..174368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.44.1

>prot_P-littoralis_Contig146.44.1 ID=prot_P-littoralis_Contig146.44.1|Name=mRNA_P-littoralis_Contig146.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
LVNPPQFSSAGSRFSPLLCHNTSPRSDAANLATQQRSEAETSRRRATDSR
VPRLIILGDKGETEQVTPRTAPV*
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mRNA from alignment at P-littoralis_Contig146:173342..174368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.44.1 ID=mRNA_P-littoralis_Contig146.44.1|Name=mRNA_P-littoralis_Contig146.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1027bp|location=Sequence derived from alignment at P-littoralis_Contig146:173342..174368+ (Pylaiella littoralis U1_48)
TTAGTAAACCCGCCGCAATTCTCATCTGCGGGCTCCCGTTTCTCTCCTCT
CCTGTGCCACAACACCTCGCCACGCAGCGACGCAGCGAACCTCGCCACGC
AGCAGCGCAGCGAAGCAGAGACTTCGCGTAGGAGGGCGACAGACAGCAGG
GTACCACGACTGATCATCTTGGGAGACAAAGGTATGTGTTTTGTGTCGCT
GTGATGTGTGCACGTCTGCATGGGGACACGCTGCTCTCTCGACCGCGAGG
TACGCTCCGGGGCATTTGAGATGACGACAGCGATTATGTGGCCCACGAAC
ACCCTTTCTCCGCTCCAAACCGACGGGAATGTGCTCCTATGACGTGTAAG
ATGACTTTCTGCCCCTCGCTTTTTATGTTTGCGACTCGTGCATACGATGG
TAGAATGTTGCTACGCTAGATATCACCCCCCCCATGTTTTTGCAGCGCCA
CCGCGGGACTGCGCGCACACCCCCCACCTCTCCGAACATTGTTTTTACGG
GGAGGGTACTCCCACCCTCCCACATTCTAAAAAATGTGTCCACAGCAGTC
GGAGCTTCCATATTACTTGATTTGAAAGCCTGGCCTGTGGCGTGAGCACG
TTTTCTTCGATATCTCGGCGCTGATGTGTCGGATCGCGCTCATTCTTTTC
GCACAATATGCGGGCCAGCCACACCATGAACGCTGCCAAGTCAACCATGT
ACATAAAGATTCTGAATTTTAAAGCTCGATTCAGTGTTCCGGGCGAAAAG
TGTAGACGTTTGGGTGTACCGAACCTCACCATTTTGTTCGCTGGCCCTGA
AATTTTGCACAGCGGTGTGTCTGACCGACTCCCACCCATATCTGTAAAAC
AACGAGTAAAATCGAAGCAATCAAGACAGTATTTTTGCATCCACGGGCCC
CCTCGGCCACCACCTTGCCTCCACCCTTCATCACCACGACGACCGCCACC
ACTCTGCCCCCGTCTGTCCATCGCATTTTGTTCGAGGAGAAACAGAGCAG
GTGACACCAAGAACGGCGCCCGTGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:173342..174368+

>mRNA_P-littoralis_Contig146.44.1 ID=mRNA_P-littoralis_Contig146.44.1|Name=mRNA_P-littoralis_Contig146.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig146:173342..174368+ (Pylaiella littoralis U1_48)
TTAGTAAACCCGCCGCAATTCTCATCTGCGGGCTCCCGTTTCTCTCCTCT
CCTGTGCCACAACACCTCGCCACGCAGCGACGCAGCGAACCTCGCCACGC
AGCAGCGCAGCGAAGCAGAGACTTCGCGTAGGAGGGCGACAGACAGCAGG
GTACCACGACTGATCATCTTGGGAGACAAAGGAGAAACAGAGCAGGTGAC
ACCAAGAACGGCGCCCGTGTAG
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