mRNA_P-littoralis_Contig146.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.43.1
Unique NamemRNA_P-littoralis_Contig146.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Match: A0A6H5JIX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 7.200e-14
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   52 SRKYQLRVRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 186
            +++Y+LRVRQ SCYCSKC VGAY++C+PAKKY+ +VG VK  SGK
Sbjct:  120 TKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYEGMVGMVKAVSGK 164
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BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.020e-13
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 NPSNWVVGRAFAQRLRA-SRKYQLRVRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 186
            NP  W    +    + A +++Y+LRVRQ SCYCSKC VGAY++C+PAKKY+ +VG VK  SGK
Sbjct:  832 NPLRWQADESIVLTVPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYEGMVGMVKDVSGK 894
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BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.030e-13
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 NPSNWVVGRAFAQRLRA-SRKYQLRVRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 186
            NP  W    +    + A +++Y+LRVRQ SCYCSKC VGAY++C+PAKKY+ +VG VK  SGK
Sbjct: 1456 NPLRWQADESIVLTVPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYEGMVGMVKDVSGK 1518
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BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Match: A0A6H5KXK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK6_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.080e-13
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 NPSNWVVGRAFAQRLRA-SRKYQLRVRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 186
            NP  W    +    L A +++Y+LRVRQ SCYCSKC VGAY++C+ AKKY  +VG VKT SGK
Sbjct:  284 NPQRWQADESTVLTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVSAKKYAGMVGMVKTVSGK 346
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BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Match: A0A6H5KM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM72_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-12
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   52 SRKYQLRVRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 186
            +++Y+LRVRQ SCYCSKC VGAY++C+PAKKY  +VG VK  SGK
Sbjct:  372 TKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYAGMVGMVKAVSGK 416
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BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Match: A0A6H5J993_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J993_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.500e-11
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 NPSNWVVGRAFAQRLRA-SRKYQLRVRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 186
            NP  W    +    L A +++Y+LRVRQ SC+ SKC VGAY +C+PAKKY  +VG VK  SGK
Sbjct:  239 NPQRWQADESTVLTLLAVTKRYKLRVRQASCHRSKCSVGAYNDCVPAKKYAGMVGMVKAVSGK 301
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BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Match: A0A6H5JJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.790e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 NPSNWVVGRAFAQRLRASRKYQLRVRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGKE 189
            NP   VVG A  +  + +RKY  RVR+ SCYCSKCRVG+Y +C+ AK Y  +VGKV   SGK+
Sbjct:  109 NPGPEVVGPA-PRPEKVTRKYTCRVRKASCYCSKCRVGSYPDCMVAKNYPEIVGKVHEKSGKD 170
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BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Match: A0A6H5JJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.050e-11
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 NPSNWVVGRAFAQRLRA-SRKYQLRVRQTSCYCSKCRVGAYEECIPAKKYKALVGKV 168
            NP  W    +    L A +++Y+LRVRQ SCYCSKC VGAY++C+PAKKY   V  V
Sbjct:  161 NPQRWQADESTVLTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYAGTVATV 217
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BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Match: A0A6H5KR28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR28_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.240e-10
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   52 SRKYQLRVRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 186
            +++Y+LRVRQ SC CSKC VGAY++C PA+KY  +VG VK  SGK
Sbjct:  222 TKRYELRVRQASCCCSKCSVGAYDDCFPARKYAGVVGMVKAVSGK 266
[Close]
BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.820e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 NPSNWVVGRAFAQRLRA-SRKYQLRVRQTSCYCSKCRVGAYEECIPAKKY 147
            NP  W    +  + L A +++Y+LRVRQ SCYCSKC VGAY++C+PAKKY
Sbjct:  564 NPQRWQADESIVRTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKY 613
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JIX4_9PHAE7.200e-1466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE1.020e-1353.97Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE1.030e-1353.97MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KXK6_9PHAE1.080e-1355.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM72_9PHAE1.180e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J993_9PHAE1.500e-1152.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJA7_9PHAE1.790e-1153.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJU0_9PHAE9.050e-1152.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR28_9PHAE1.240e-1062.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXG9_9PHAE1.820e-1056.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:160318..160512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size197
Hectar predicted targeting categoryother localisation
Exons1
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.910401-CDS-P-littoralis_Contig146:160317..1605121680789686.910401-CDS-P-littoralis_Contig146:160317..160512Pylaiella littoralis U1_48CDSP-littoralis_Contig146 160318..160512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.43.1prot_P-littoralis_Contig146.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 160318..160512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.43.1

>prot_P-littoralis_Contig146.43.1 ID=prot_P-littoralis_Contig146.43.1|Name=mRNA_P-littoralis_Contig146.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
NPSNWVVGRAFAQRLRASRKYQLRVRQTSCYCSKCRVGAYEECIPAKKYK
ALVGKVKTASGKENP
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mRNA from alignment at P-littoralis_Contig146:160318..160512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.43.1 ID=mRNA_P-littoralis_Contig146.43.1|Name=mRNA_P-littoralis_Contig146.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig146:160318..160512+ (Pylaiella littoralis U1_48)
AATCCCAGCAACTGGGTAGTGGGTCGGGCTTTTGCTCAGCGCCTCAGGGC
CTCGAGGAAGTATCAGCTTCGTGTTCGCCAAACATCGTGTTACTGTTCGA
AGTGCAGGGTAGGGGCATACGAGGAGTGTATCCCAGCCAAAAAATATAAG
GCGTTGGTAGGCAAGGTGAAGACCGCATCGGGGAAAGAGAACCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:160318..160512+

>mRNA_P-littoralis_Contig146.43.1 ID=mRNA_P-littoralis_Contig146.43.1|Name=mRNA_P-littoralis_Contig146.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig146:160318..160512+ (Pylaiella littoralis U1_48)
AATCCCAGCAACTGGGTAGTGGGTCGGGCTTTTGCTCAGCGCCTCAGGGC
CTCGAGGAAGTATCAGCTTCGTGTTCGCCAAACATCGTGTTACTGTTCGA
AGTGCAGGGTAGGGGCATACGAGGAGTGTATCCCAGCCAAAAAATATAAG
GCGTTGGTAGGCAAGGTGAAGACCGCATCGGGGAAAGAGAACCCG
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