mRNA_P-littoralis_Contig146.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig146.42.1
Unique Name	mRNA_P-littoralis_Contig146.42.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 6.290e-61
Identity = 86/138 (62.32%), Postives = 107/138 (77.54%), Query Frame = 1

Query:   19 LCLAVEPRASRCACEIHTQQSLYLEALGMFMGSMHDNCDCTCRWCEGGEGCKRWLGMCRSLHNFSDEFMCEKVDMLGEDKEDEFEHWGRRPACVAGKCSNCGFGNPNGIPTDCLALGRAAHRMVGWIRFQDQEMEDGK 432
            LC+ VEP+ S+CAC+IHTQQ LYL+A  M M +MH NCDCTC+WC+GG GC +W+ MC+ LH+FS+   CEKVD L ED+   FEHWG +PACVA +CS C FGNP+ IP +C ALG  A R+VGW+RF+DQ MEDGK
Sbjct:   98 LCVTVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALDCEKVDCLEEDRGGRFEHWGGKPACVAMECSECRFGNPDDIPMNCDALGSMADRVVGWLRFEDQVMEDGK 235

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BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 2.050e-59
Identity = 86/134 (64.18%), Postives = 105/134 (78.36%), Query Frame = 1

Query:   31 VEPRASRCACEIHTQQSLYLEALGMFMGSMHDNCDCTCRWCEGGEGCKRWLGMCRSLHNFSDEFMCEKVDMLGEDKEDEFEHWGRRPACVAGKCSNCGFGNPNGIPTDCLALGRAAHRMVGWIRFQDQEMEDGK 432
            VEP+ S+CAC+IHTQQ LYL+A  M M ++H NCDCTC+WC+GG GC +W+ MC+ LH+FS+   CEKVD L ED+   FEHWGR+PACVA +CS CGFGNP GIP +C ALG  A R+VGW+RF DQ MEDGK
Sbjct:  390 VEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGK 523

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BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 5.400e-59
Identity = 86/134 (64.18%), Postives = 105/134 (78.36%), Query Frame = 1

Query:   31 VEPRASRCACEIHTQQSLYLEALGMFMGSMHDNCDCTCRWCEGGEGCKRWLGMCRSLHNFSDEFMCEKVDMLGEDKEDEFEHWGRRPACVAGKCSNCGFGNPNGIPTDCLALGRAAHRMVGWIRFQDQEMEDGK 432
            VEP+ S+CAC+IHTQQ LYL+A  M M ++H NCDCTC+WC+GG GC +W+ MC+ LH+FS+   CEKVD L ED+   FEHWGR+PACVA +CS CGFGNP GIP +C ALG  A R+VGW+RF DQ MEDGK
Sbjct: 1014 VEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGK 1147

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BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.950e-58
Identity = 83/135 (61.48%), Postives = 103/135 (76.30%), Query Frame = 1

Query:   28 AVEPRASRCACEIHTQQSLYLEALGMFMGSMHDNCDCTCRWCEGGEGCKRWLGMCRSLHNFSDEFMCEKVDMLGEDKEDEFEHWGRRPACVAGKCSNCGFGNPNGIPTDCLALGRAAHRMVGWIRFQDQEMEDGK 432
            +VEP+ S+CAC+ HTQQ + L+A  M M + H NCDCTC+WC+GG GC +W+ MC+ LH+FS+   CEKVD L ED+   FEHWGR+PACVA +CS CGFGNP GIP +C ALG  A R+VGW+RF DQ MEDGK
Sbjct:   47 SVEPKVSKCACQTHTQQGIDLKAFEMLMPATHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGK 181

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BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.440e-57
Identity = 85/134 (63.43%), Postives = 105/134 (78.36%), Query Frame = 1

Query:   31 VEPRASRCACEIHTQQSLYLEALGMFMGSMHDNCDCTCRWCEGGEGCKRWLGMCRSLHNFSDEFMCEKVDMLGEDKEDEFEHWGRRPACVAGKCSNCGFGNPNGIPTDCLALGRAAHRMVGWIRFQDQEMEDGK 432
            VEP+ S CAC+IHTQQ LYL+ + M M +MH NCDCTC+ C+GG GC +W+ MC+ LH+FS+   CEKVD L ED+  +FEHWGR+PACVA +CS CGFGNP GIP +C ALG  A R+VGW+RF+DQ MEDGK
Sbjct:  125 VEPKISPCACQIHTQQGLYLK-VEMLMPAMHSNCDCTCKRCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGKFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGK 257

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BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 5.550e-55
Identity = 78/134 (58.21%), Postives = 98/134 (73.13%), Query Frame = 1

Query:   31 VEPRASRCACEIHTQQSLYLEALGMFMGSMHDNCDCTCRWCEGGEGCKRWLGMCRSLHNFSDEFMCEKVDMLGEDKEDEFEHWGRRPACVAGKCSNCGFGNPNGIPTDCLALGRAAHRMVGWIRFQDQEMEDGK 432
            VEP+ S+CAC+IHTQQ LY +A  M M ++H NC+CTC WC+G  GC +W+ MC+ LH+FS+   CEK   L E +   FEHWGR+PACVA +C   GFGNP GIP +C ALG  A R+VGW+RF+DQ MEDGK
Sbjct:  125 VEPKVSQCACQIHTQQGLYHKAFEMLMPAIHANCECTCNWCDGS-GCGKWMAMCKDLHSFSEALACEKAGFLAEGRGGRFEHWGRKPACVAMECPEYGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGK 257

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BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.180e-52
Identity = 80/134 (59.70%), Postives = 97/134 (72.39%), Query Frame = 1

Query:   31 VEPRASRCACEIHTQQSLYLEALGMFMGSMHDNCDCTCRWCEGGEGCKRWLGMCRSLHNFSDEFMCEKVDMLGEDKEDEFEHWGRRPACVAGKCSNCGFGNPNGIPTDCLALGRAAHRMVGWIRFQDQEMEDGK 432
            V+P AS+CAC+IHTQQ+LYLEAL   MGS+H +CDC C WC+   GCKRW  MC+ L  FSD   CEKV++L  D +  FE WGR+PAC A KCS CGFG P GIPT+C A+ +   R+V WIRF+DQ M DGK
Sbjct:  378 VDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDD-LGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGK 510

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BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Match: A0A6H5L4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W3_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.120e-51
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = 1

Query:  103 MFMGSMHDNCDCTCRWCEGGEGCKRWLGMCRSLHNFSDEFMCEKVDMLGEDKEDEFEHWGRRPACVAGKCSNCGFGNPNGIPTDCLALGRAAHRMVGWIRFQDQEMEDGK 432
            M M +MH NCDCTC+WC+GG GC +W+ MC+ LH+FS+   CEKVD L ED+   FEHWGR+PACVA +CS CGFGNP GIP  C AL   A R+VGW+RF++Q MEDGK
Sbjct:    1 MLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMKCDALESMADRVVGWLRFENQVMEDGK 110

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BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 5.120e-51
Identity = 80/134 (59.70%), Postives = 97/134 (72.39%), Query Frame = 1

Query:   31 VEPRASRCACEIHTQQSLYLEALGMFMGSMHDNCDCTCRWCEGGEGCKRWLGMCRSLHNFSDEFMCEKVDMLGEDKEDEFEHWGRRPACVAGKCSNCGFGNPNGIPTDCLALGRAAHRMVGWIRFQDQEMEDGK 432
            V+P AS+CAC+IHTQQ+LYLEAL   MGS+H +CDC C WC+   GCKRW  MC+ L  FSD   CEKV++L  D +  FE WGR+PAC A KCS CGFG P GIPT+C A+ +   R+V WIRF+DQ M DGK
Sbjct:  378 VDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDD-LGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGK 510

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BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Match: A0A6H5JE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE40_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.930e-24
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1

Query:   31 VEPRASRCACEIHTQQSLYLEALGMFMGSMHDNCDCTCRWCEGGEGCKRWLGMCRSLHNFSD 216
            VEP+ S+CAC+IHTQQ LYL+A  M M +MH NCDCTC+WC+GG GC +W+ MC+ LH+FS+
Sbjct:  125 VEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKYLHSFSE 186

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig146.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KY26_9PHAE	6.290e-61	62.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KT99_9PHAE	2.050e-59	64.18	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWW3_9PHAE	5.400e-59	64.18	MULE domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A6H5KXG9_9PHAE	1.950e-58	61.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K491_9PHAE	1.440e-57	63.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KI39_9PHAE	5.550e-55	58.21	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF90_9PHAE	1.180e-52	59.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L4W3_9PHAE	4.120e-51	62.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7E6_9PHAE	5.120e-51	59.70	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JE40_9PHAE	1.930e-24	62.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig146	contig	P-littoralis_Contig146:158770..159201 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	434
Hectar predicted targeting category	signal peptide
Exons	1
Cds size	432

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789686.8799899-CDS-P-littoralis_Contig146:158769..159201	1680789686.8799899-CDS-P-littoralis_Contig146:158769..159201	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig146 158770..159201 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig146.42.1	prot_P-littoralis_Contig146.42.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig146 158770..159201 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig146:158770..159201+
coding sequence from alignment at P-littoralis_Contig146:158770..159201+

protein sequence of mRNA_P-littoralis_Contig146.42.1

>prot_P-littoralis_Contig146.42.1 ID=prot_P-littoralis_Contig146.42.1|Name=mRNA_P-littoralis_Contig146.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MSIFLILCLAVEPRASRCACEIHTQQSLYLEALGMFMGSMHDNCDCTCRW
CEGGEGCKRWLGMCRSLHNFSDEFMCEKVDMLGEDKEDEFEHWGRRPACV
AGKCSNCGFGNPNGIPTDCLALGRAAHRMVGWIRFQDQEMEDGK

mRNA from alignment at P-littoralis_Contig146:158770..159201+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig146.42.1 ID=mRNA_P-littoralis_Contig146.42.1|Name=mRNA_P-littoralis_Contig146.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig146:158770..159201+ (Pylaiella littoralis U1_48)
ATGTCGATATTTCTTATCTTATGCCTTGCAGTTGAGCCAAGGGCGTCGCG
ATGTGCTTGCGAGATCCACACGCAGCAGTCGCTTTATCTCGAAGCCCTCG
GGATGTTCATGGGATCAATGCATGACAACTGCGACTGCACGTGCAGGTGG
TGCGAAGGCGGGGAAGGTTGTAAGAGGTGGTTGGGAATGTGTAGATCTTT
GCACAATTTCTCTGACGAATTCATGTGCGAGAAGGTGGACATGTTGGGGG
AGGATAAGGAGGATGAGTTTGAGCACTGGGGGAGGAGGCCGGCGTGCGTT
GCGGGCAAGTGTTCAAATTGCGGGTTTGGGAACCCAAATGGCATTCCTAC
CGACTGTTTGGCTCTCGGTCGCGCGGCACATAGAATGGTGGGGTGGATCC
GTTTCCAGGATCAAGAGATGGAGGACGGCAAG

Coding sequence (CDS) from alignment at P-littoralis_Contig146:158770..159201+

>mRNA_P-littoralis_Contig146.42.1 ID=mRNA_P-littoralis_Contig146.42.1|Name=mRNA_P-littoralis_Contig146.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig146:158770..159201+ (Pylaiella littoralis U1_48)
ATGTCGATATTTCTTATCTTATGCCTTGCAGTTGAGCCAAGGGCGTCGCG
ATGTGCTTGCGAGATCCACACGCAGCAGTCGCTTTATCTCGAAGCCCTCG
GGATGTTCATGGGATCAATGCATGACAACTGCGACTGCACGTGCAGGTGG
TGCGAAGGCGGGGAAGGTTGTAAGAGGTGGTTGGGAATGTGTAGATCTTT
GCACAATTTCTCTGACGAATTCATGTGCGAGAAGGTGGACATGTTGGGGG
AGGATAAGGAGGATGAGTTTGAGCACTGGGGGAGGAGGCCGGCGTGCGTT
GCGGGCAAGTGTTCAAATTGCGGGTTTGGGAACCCAAATGGCATTCCTAC
CGACTGTTTGGCTCTCGGTCGCGCGGCACATAGAATGGTGGGGTGGATCC
GTTTCCAGGATCAAGAGATGGAGGACGGCAAG