mRNA_P-littoralis_Contig146.41.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5JNM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM5_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.110e-25 Identity = 52/107 (48.60%), Postives = 67/107 (62.62%), Query Frame = 2
Query: 2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSDV 322
+L ++ + + IGR+ Y LA VAG G HTC P PC+ A+R PP E + S A RAE LG+R T+R A RM + N ++PP QAL+EGRY W RKTRSD
Sbjct: 38 SLGTLQGNSKSNIGRVAYTIVLAAVAGAGEHTCSPTDPCNPAERYPPAEPQSGVS-FAQRAESLGVREKTFRAAHVRMHHTNHTIPPPQALEEGRYCWTRRKTRSDA 143
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5J5R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5R2_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 8.570e-22 Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 2
Query: 2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSDVT 325
+L A+K + IGR+ Y + LA VAG G HTC P P E +G S A RAE LG+R T+R A RM + + ++PP QAL+EGRY W RKTRSD T
Sbjct: 38 SLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAYVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDAT 144
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5K614_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K614_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 3.430e-21 Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 2
Query: 2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSDVT 325
+L A+K + IGR+ Y + LA VAG G HTC P P E +G S A RAE LG+R T+R A RM + + ++PP QAL+EGRY W RKTRSD T
Sbjct: 68 SLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDAT 174
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5KLZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ5_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 3.680e-21 Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 2
Query: 2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSDVT 325
+L A+K + IGR+ Y + LA VAG G HTC P P E +G S A RAE LG+R T+R A RM + + ++PP QAL+EGRY W RKTRSD T
Sbjct: 124 SLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDAT 230
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5JDV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDV5_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 1.700e-19 Identity = 48/99 (48.48%), Postives = 58/99 (58.59%), Query Frame = 2
Query: 32 TKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYL-WADRKTRSDVT 325
T IGR+ Y + LA VAG G HTC P P E +G S A RAE LG+R T+R A RM + + ++PP QAL+EGRY W RKTRSD T
Sbjct: 4 TNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYYCWTTRKTRSDAT 101
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.210e-18 Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 2
Query: 2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSD 319
++EA+K H + IGR YN+ +A AG HTCDP P G+ S A RA+ LG+R T+R A+ RM + ++PPQ+AL++GRYLWA RK RSD
Sbjct: 191 SIEALKQHSHSNIGRTAYNTVIAAAAGAQ-HTCDPDDPXXXXXXXXXXXXHGAVSLTA-RAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSD 294
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.270e-18 Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 2
Query: 2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSD 319
++EA+K H + IGR YN+ +A AG HTCDP P G+ S A RA+ LG+R T+R A+ RM + ++PPQ+AL++GRYLWA RK RSD
Sbjct: 815 SIEALKQHSHSNIGRTAYNTVIAAAAGAQ-HTCDPDDPXXXXXXXXXXXXHGAVSLTA-RAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSD 918
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5K7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D4_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.530e-17 Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 2
Query: 2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSD 319
++E +K H + IGR YN+ +A AG HTCDP P G+ S +A RA+ LG+R T+R A+ RM + ++PPQ+AL++GRYLWA RK RSD
Sbjct: 191 SIETLKLHSHSNIGRAAYNTVIAAAAGAE-HTCDPDDPXXXXXXXXXXXXHGAVS-LAARAQGLGVRDGTFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSD 294
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5KF65_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF65_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 5.440e-13 Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 2
Query: 104 PAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSDVT 325
P PC+ A+RCPP +G S A RAE L +R T R A RM +A+ ++PP QAL++GRY W KTRSD T
Sbjct: 395 PTDPCNPAERCPPAAPQGGVS-FAQRAENLRVRGKTLRAAHVRMHHADHTIPPPQALEQGRYCWTTHKTRSDAT 467 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig146.41.1 >prot_P-littoralis_Contig146.41.1 ID=prot_P-littoralis_Contig146.41.1|Name=mRNA_P-littoralis_Contig146.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp MKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTback to top mRNA from alignment at P-littoralis_Contig146:157749..158073+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig146.41.1 ID=mRNA_P-littoralis_Contig146.41.1|Name=mRNA_P-littoralis_Contig146.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=325bp|location=Sequence derived from alignment at P-littoralis_Contig146:157749..158073+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig146:157749..158073+ >mRNA_P-littoralis_Contig146.41.1 ID=mRNA_P-littoralis_Contig146.41.1|Name=mRNA_P-littoralis_Contig146.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig146:157749..158073+ (Pylaiella littoralis U1_48)back to top |