mRNA_P-littoralis_Contig146.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.41.1
Unique NamemRNA_P-littoralis_Contig146.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5JNM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.110e-25
Identity = 52/107 (48.60%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSDV 322
            +L  ++ +  + IGR+ Y   LA VAG G HTC P  PC+ A+R PP E +   S  A RAE LG+R  T+R A  RM + N ++PP QAL+EGRY W  RKTRSD 
Sbjct:   38 SLGTLQGNSKSNIGRVAYTIVLAAVAGAGEHTCSPTDPCNPAERYPPAEPQSGVS-FAQRAESLGVREKTFRAAHVRMHHTNHTIPPPQALEEGRYCWTRRKTRSDA 143          
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5J5R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5R2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 8.570e-22
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSDVT 325
            +L A+K    + IGR+ Y + LA VAG G HTC P  P          E +G  S  A RAE LG+R  T+R A  RM + + ++PP QAL+EGRY W  RKTRSD T
Sbjct:   38 SLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAYVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDAT 144          
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5K614_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K614_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.430e-21
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSDVT 325
            +L A+K    + IGR+ Y + LA VAG G HTC P  P          E +G  S  A RAE LG+R  T+R A  RM + + ++PP QAL+EGRY W  RKTRSD T
Sbjct:   68 SLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDAT 174          
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5KLZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.680e-21
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSDVT 325
            +L A+K    + IGR+ Y + LA VAG G HTC P  P          E +G  S  A RAE LG+R  T+R A  RM + + ++PP QAL+EGRY W  RKTRSD T
Sbjct:  124 SLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDAT 230          
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5JDV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDV5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.700e-19
Identity = 48/99 (48.48%), Postives = 58/99 (58.59%), Query Frame = 2
Query:   32 TKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYL-WADRKTRSDVT 325
            T IGR+ Y + LA VAG G HTC P  P          E +G  S  A RAE LG+R  T+R A  RM + + ++PP QAL+EGRY  W  RKTRSD T
Sbjct:    4 TNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYYCWTTRKTRSDAT 101          
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.210e-18
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSD 319
            ++EA+K H  + IGR  YN+ +A  AG   HTCDP  P             G+ S  A RA+ LG+R  T+R A+ RM   + ++PPQ+AL++GRYLWA RK RSD
Sbjct:  191 SIEALKQHSHSNIGRTAYNTVIAAAAGAQ-HTCDPDDPXXXXXXXXXXXXHGAVSLTA-RAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSD 294          
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.270e-18
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSD 319
            ++EA+K H  + IGR  YN+ +A  AG   HTCDP  P             G+ S  A RA+ LG+R  T+R A+ RM   + ++PPQ+AL++GRYLWA RK RSD
Sbjct:  815 SIEALKQHSHSNIGRTAYNTVIAAAAGAQ-HTCDPDDPXXXXXXXXXXXXHGAVSLTA-RAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSD 918          
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5K7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.530e-17
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    2 ALEAMKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSD 319
            ++E +K H  + IGR  YN+ +A  AG   HTCDP  P             G+ S +A RA+ LG+R  T+R A+ RM   + ++PPQ+AL++GRYLWA RK RSD
Sbjct:  191 SIETLKLHSHSNIGRAAYNTVIAAAAGAE-HTCDPDDPXXXXXXXXXXXXHGAVS-LAARAQGLGVRDGTFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSD 294          
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Match: A0A6H5KF65_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF65_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.440e-13
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  104 PAHPCSAADRCPPVESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTRSDVT 325
            P  PC+ A+RCPP   +G  S  A RAE L +R  T R A  RM +A+ ++PP QAL++GRY W   KTRSD T
Sbjct:  395 PTDPCNPAERCPPAAPQGGVS-FAQRAENLRVRGKTLRAAHVRMHHADHTIPPPQALEQGRYCWTTHKTRSDAT 467          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JNM5_9PHAE1.110e-2548.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5R2_9PHAE8.570e-2246.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K614_9PHAE3.430e-2146.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLZ5_9PHAE3.680e-2146.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDV5_9PHAE1.700e-1948.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE2.210e-1844.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE2.270e-1844.34MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K7D4_9PHAE1.530e-1743.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF65_9PHAE5.440e-1350.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:157749..158073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size327
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.8294363-UTR-P-littoralis_Contig146:157748..1577611680789686.8294363-UTR-P-littoralis_Contig146:157748..157761Pylaiella littoralis U1_48UTRP-littoralis_Contig146 157749..157761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.8479393-CDS-P-littoralis_Contig146:157761..1580731680789686.8479393-CDS-P-littoralis_Contig146:157761..158073Pylaiella littoralis U1_48CDSP-littoralis_Contig146 157762..158073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.41.1prot_P-littoralis_Contig146.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 157762..158073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.41.1

>prot_P-littoralis_Contig146.41.1 ID=prot_P-littoralis_Contig146.41.1|Name=mRNA_P-littoralis_Contig146.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MKPHCSTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPVESRGST
SSVATRAELLGLRPTTYREAQDRMKNANFSVPPQQALKEGRYLWADRKTR
SDVT
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mRNA from alignment at P-littoralis_Contig146:157749..158073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.41.1 ID=mRNA_P-littoralis_Contig146.41.1|Name=mRNA_P-littoralis_Contig146.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=325bp|location=Sequence derived from alignment at P-littoralis_Contig146:157749..158073+ (Pylaiella littoralis U1_48)
TGCGTTGGAGGCGATGAAGCCGCACTGCAGCACCAAGATCGGCCGCATGG TGTACAACAGTGCGCTGGCTACAGTCGCTGGTGTAGGGGGGCACACATGT GATCCTGCTCACCCGTGCAGCGCCGCTGACCGCTGCCCTCCCGTTGAGTC ACGGGGTTCTACCTCCTCTGTCGCCACACGAGCAGAGCTGCTTGGGCTGA GGCCCACAACGTACCGTGAAGCCCAAGATCGGATGAAGAACGCCAACTTT TCCGTCCCACCGCAGCAAGCTTTGAAGGAGGGGCGCTACTTGTGGGCTGA CCGTAAGACCAGGAGCGACGTGACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:157749..158073+

>mRNA_P-littoralis_Contig146.41.1 ID=mRNA_P-littoralis_Contig146.41.1|Name=mRNA_P-littoralis_Contig146.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig146:157749..158073+ (Pylaiella littoralis U1_48)
ATGAAGCCGCACTGCAGCACCAAGATCGGCCGCATGGTGTACAACAGTGC
GCTGGCTACAGTCGCTGGTGTAGGGGGGCACACATGTGATCCTGCTCACC
CGTGCAGCGCCGCTGACCGCTGCCCTCCCGTTGAGTCACGGGGTTCTACC
TCCTCTGTCGCCACACGAGCAGAGCTGCTTGGGCTGAGGCCCACAACGTA
CCGTGAAGCCCAAGATCGGATGAAGAACGCCAACTTTTCCGTCCCACCGC
AGCAAGCTTTGAAGGAGGGGCGCTACTTGTGGGCTGACCGTAAGACCAGG
AGCGACGTGACA
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