mRNA_P-littoralis_Contig146.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.26.1
Unique NamemRNA_P-littoralis_Contig146.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig146.26.1 vs. uniprot
Match: A0A6H5KIZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIZ7_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 2.700e-113
Identity = 191/339 (56.34%), Postives = 235/339 (69.32%), Query Frame = 1 
Query:  145 LADFESDVVAWSFGDRADVIRSPGFEFELEV-PDLGRNVPALIGLGLCSGSAETVDGKQYLLYPVLTCLASAGETFDPPLRRRFPVGDVDSMESGSDRGSHDDADRAYRAHLESVFSALTREDANSEWVPIDGDIVQADGGI-FVLKVTVKHFCEFALRQTIDVKAGHAEPVPLPKLRFKSRESHYHFVNLGTQHLMVRCWGTTRKKAFLNGVKVNAGVGPRSGANVGGEVTRTLVDGSSTGVFTFGVPGGPATETGDQVCVQLDEVESLTVVWTTQEQESASRQSWWSGDGGHELVQVWGKISMKSKQVLVFGPELEGARPIVADLVVNKGNSVGKAV 1155
            L DF+ DVVAWSFG+RA+V+RSP  EFELEV P L +N PAL+GLGLCSGSAE V+G+QYLL+ VLTCL  AGE FDPPL  RFPVGD DSMESGS  GS DDA+ AYRAHL+S FSA+ R+DA+SEWVPI GDIV+  GG  F L+V + HFC+F L Q IDV+ G+ E + LPK  F SR++HYHF NLGT+ L+   WG  RK+ F+N V+ NA V   +G +VG E+ RTLVD   +G +   VPG   + +  QVC +  ++E  TV WTTQE+ S S     SG  GH+LVQVWG   M S  VLV G     A P +A+L V+ G  VG+ V
Sbjct:  231 LQDFKGDVVAWSFGNRAEVLRSPDSEFELEVQPGLNKNYPALVGLGLCSGSAEYVNGEQYLLHCVLTCLTRAGEKFDPPLLLRFPVGDEDSMESGSLDGSQDDAEEAYRAHLQSTFSAVKRDDASSEWVPIGGDIVRMKGGRDFFLEVKISHFCDFGLSQAIDVEVGYTELIELPKKMFSSRKTHYHFANLGTKPLVFHVWGAGRKEVFVNVVRANAAV-DLAGGSVGAEMERTLVDVPGSGPYEVHVPGEAGSGSKPQVCRKFVDLEKPTVAWTTQERISPS-----SGVEGHQLVQVWGSTPMLSGHVLVVGAMAPDATPAIANLRVDDGEDVGRLV 563
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BLAST of mRNA_P-littoralis_Contig146.26.1 vs. uniprot
Match: D8LHD4_ECTSI (Putative leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD4_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 3.980e-107
Identity = 187/344 (54.36%), Postives = 238/344 (69.19%), Query Frame = 1 
Query:  136 VVQLADFESDVVAWSFGDRADVIRSPGFEFELEVPDLGRNVPALIGLGLCSGSAETVDGKQYLLYPVLTCLASAGETFDPPLRRRFPVGDVDSMESGSDRGSHDDADRAYRAHLESVFSALTREDANSEWVPIDGDIVQADGGIFVLKVTVKHFCEFALRQTIDVKAGHAEPVPLPKLRFKSRESHYHFVNLGTQHLMVRCWGTTRKKAFLNGVKVNAGVGPRSGANVGGEVTRTLVDGSSTGVFTFGVPGGPATETGDQVCVQLDEVESLTVVWTTQEQESASRQSWWSGDGGHELVQVWGKISMKSKQVLVFGPELEGARPIVADLVVNKGNSVGKAVKAAI 1167
            + +++ F+  V+AWSFG    V+RS GFEFELEVP LGRNVPALIGL   S SAE VDG++ LL+PV+TCLA +GE FDPPL  RFPVGDV+SMESGSD GS DDA+  YRA+LES FS LTR+ A+SEWVP+DG I Q D GIFVL+V V HFC+FAL+Q I V +G  E V LP+L+ KSR SHYHFVNLGT++L+V CWG TRK+ FL   ++  G G  +G +   E TRTLVD   TGV+   VPGGP  +  ++ C+ ++  ESLTV +TTQ+   A           HELVQVWG   M+ K  ++FG   E A  +V +L V  G +VG+ V++ +
Sbjct:  437 MAEISGFDGYVMAWSFGQHPAVLRSNGFEFELEVPRLGRNVPALIGLR--SSSAEVVDGEKCLLHPVVTCLARSGEVFDPPLCLRFPVGDVNSMESGSDCGS-DDAEVTYRAYLESTFSTLTRKHASSEWVPVDGTIEQTDEGIFVLEVQVSHFCDFALKQAIKVDSGGVELVKLPQLKHKSRRSHYHFVNLGTENLVVHCWGVTRKRGFLESFRLKLGFG-LNGGDAEVEATRTLVDAPGTGVYKVDVPGGPVDDPRNEACLVVNGFESLTVAYTTQKTVRAGTLF----GSTHELVQVWGTRHMQHKHAMIFGILPESA--LVPNLKVEDGVNVGELVRSKV 770
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BLAST of mRNA_P-littoralis_Contig146.26.1 vs. uniprot
Match: A0A6H5K655_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K655_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 9.220e-91
Identity = 172/344 (50.00%), Postives = 211/344 (61.34%), Query Frame = 1 
Query:  145 LADFESDVVAWSFGDRADVIRSPGFEFELEVPDLGRNVPALIGLGLCSGSAETVDGKQYLLYPVLTCLASAGETFDPPLRRRFPVGDVDSMESGSDRGSHDDA-DRAYRAHLESVFSALTREDANSEWVPIDGDIVQADGGIFVLKVTVKHFCEFALRQTIDVKAGHAEPVPLPKLRFKSRESHYHFVNLGTQHLMVRCWGTTRKKAFLNGVKVNAGVGPRSGANVGGEVTRTLVDGSSTGVFTFGVPGGPATETGDQVCVQLDEVESLTVVWTTQEQESASRQSWWSGDGGHELVQVWGKISMKSKQVLVFGPELEGARPI-VADLVVNKGNSVGKAVKAAIE 1170
            ++DFE +VVAWSFGD  DV+R+   +F+LEVPDLGRNVP LIGL  CS SAE VDGKQ LL+PV+ CLA  GE+FDP LR R P+GD  SMESGSD  S D   D AYRA+L S F+ +TREDA+S WVPIDG I QA+GG+FVL+V V HFC+FAL Q I V  G  E VPLPKL+ K R SH+HFVN G ++L+  C G   K  F +  K+N G G  S ANV         D +ST                 +VC      ES+TV WT+Q     +R         H + QVWG   M+ K  +VFGP L G     V++L V+ G S GK VK+ +E
Sbjct:   19 ISDFEGEVVAWSFGDSPDVLRNHDLDFDLEVPDLGRNVPTLIGL--CSSSAEVVDGKQCLLHPVVRCLARNGESFDPNLRLRLPLGDEASMESGSDGASDDXXXDVAYRAYLASKFTVVTREDASSGWVPIDGTIQQAEGGVFVLEVAVPHFCDFALSQGISVPRGCMEIVPLPKLKGKPRRSHFHFVNQGEENLVAHCRGAVEKTGFWDFFKINLGAGATS-ANV--------EDPAST------------NPNKSEVCRVFLGTESVTVAWTSQRYPQNAR---------HRIPQVWGFSPMQHKHAMVFGP-LSGIDTCQVSNLKVDDGESFGKLVKSKVE 329
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KIZ7_9PHAE2.700e-11356.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHD4_ECTSI3.980e-10754.36Putative leucine rich repeat protein n=1 Tax=Ectoc... [more]
A0A6H5K655_9PHAE9.220e-9150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:129200..130788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHD4
PFAMsLRRNT_2,LRR_1,LRR_6,LRR_8,XK-related
Model size1589
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.2e-110
EggNOG OGsCOG4886@1|root,2R960@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size1170
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.4799695-UTR-P-littoralis_Contig146:129199..1296151680789686.4799695-UTR-P-littoralis_Contig146:129199..129615Pylaiella littoralis U1_48UTRP-littoralis_Contig146 129200..129615 -
1680789686.501724-UTR-P-littoralis_Contig146:130785..1307881680789686.501724-UTR-P-littoralis_Contig146:130785..130788Pylaiella littoralis U1_48UTRP-littoralis_Contig146 130786..130788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.4898946-CDS-P-littoralis_Contig146:129615..1307851680789686.4898946-CDS-P-littoralis_Contig146:129615..130785Pylaiella littoralis U1_48CDSP-littoralis_Contig146 129616..130785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.26.1prot_P-littoralis_Contig146.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 129616..130785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.26.1

>prot_P-littoralis_Contig146.26.1 ID=prot_P-littoralis_Contig146.26.1|Name=mRNA_P-littoralis_Contig146.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=390bp
MVVRVFNSFRALYRSLQAETPERFPVLLADYLQSLRGLRTSHDLVVQLAD
FESDVVAWSFGDRADVIRSPGFEFELEVPDLGRNVPALIGLGLCSGSAET
VDGKQYLLYPVLTCLASAGETFDPPLRRRFPVGDVDSMESGSDRGSHDDA
DRAYRAHLESVFSALTREDANSEWVPIDGDIVQADGGIFVLKVTVKHFCE
FALRQTIDVKAGHAEPVPLPKLRFKSRESHYHFVNLGTQHLMVRCWGTTR
KKAFLNGVKVNAGVGPRSGANVGGEVTRTLVDGSSTGVFTFGVPGGPATE
TGDQVCVQLDEVESLTVVWTTQEQESASRQSWWSGDGGHELVQVWGKISM
KSKQVLVFGPELEGARPIVADLVVNKGNSVGKAVKAAIE*
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mRNA from alignment at P-littoralis_Contig146:129200..130788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.26.1 ID=mRNA_P-littoralis_Contig146.26.1|Name=mRNA_P-littoralis_Contig146.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1589bp|location=Sequence derived from alignment at P-littoralis_Contig146:129200..130788- (Pylaiella littoralis U1_48)
GTGATGGTGGTGCGTGTTTTTAACAGTTTCCGAGCCCTATACCGATCTTT
GCAAGCAGAAACGCCGGAGCGATTCCCGGTGTTACTTGCCGATTATCTTC
AGAGCTTGAGAGGTTTGCGGACCTCACATGATCTCGTCGTGCAACTCGCA
GATTTCGAGAGCGATGTAGTGGCTTGGTCTTTCGGAGACCGTGCTGATGT
TATCCGAAGTCCTGGCTTTGAGTTTGAGCTTGAGGTGCCCGACCTGGGAA
GAAACGTTCCTGCCCTGATCGGCCTCGGCCTGTGCTCGGGCTCAGCTGAA
ACAGTAGACGGAAAGCAGTATCTGCTGTATCCCGTACTGACGTGCCTCGC
CAGCGCTGGAGAGACATTCGACCCCCCGCTCCGTCGGCGGTTTCCCGTGG
GAGACGTGGACTCCATGGAATCGGGTTCCGACCGCGGCAGCCATGATGAC
GCTGACCGGGCGTACCGTGCCCACCTTGAGTCCGTCTTTTCGGCTTTGAC
GCGAGAAGACGCTAATTCAGAGTGGGTCCCGATTGATGGTGACATCGTGC
AAGCGGACGGGGGTATTTTCGTTCTGAAGGTGACGGTAAAGCACTTTTGC
GAATTCGCCCTCAGGCAAACGATCGACGTAAAAGCCGGTCATGCGGAACC
GGTTCCATTACCAAAGCTCAGGTTTAAGAGTAGAGAGTCGCATTACCACT
TCGTCAATCTAGGCACGCAGCACCTCATGGTCCGCTGTTGGGGCACTACT
CGGAAAAAGGCTTTCTTAAACGGTGTAAAGGTGAACGCAGGAGTTGGACC
CAGGAGCGGGGCGAACGTTGGGGGAGAGGTGACACGAACGCTCGTAGACG
GGTCTAGCACTGGGGTTTTCACGTTCGGCGTGCCTGGTGGACCCGCCACC
GAAACCGGGGATCAGGTTTGCGTGCAGCTTGATGAAGTGGAGTCGCTGAC
AGTAGTGTGGACAACTCAGGAACAAGAATCAGCATCGCGGCAATCGTGGT
GGTCGGGTGATGGTGGCCACGAGCTAGTTCAGGTCTGGGGCAAAATCTCC
ATGAAAAGTAAGCAGGTCTTGGTGTTCGGACCCGAGCTGGAGGGCGCGAG
GCCTATCGTGGCAGACTTGGTAGTGAATAAGGGCAATAGTGTAGGTAAAG
CTGTGAAGGCGGCGATAGAATGAGGTTGGAATGGCGTGAGGTCGGCTGCT
ATCTCACACTGTTGCTTGTTTATTTCCTCTAGATGCGTTGGTTTTCGGTT
GGCATAGCCTCACTTACGAAGAAAGCCATTTAATTTGTGAACCCCAATTC
GAAACGTTGAACCATCTGTGCTGAGCACGTGATCATGATTCGTAGTGTTG
TCGGAGTGTGGAATGCTTCGAAGTCTACAGGTCGTTACCAAGGATTTGGC
AAAGTCGTCAAAAGGTTGTTGGTTCACCATCCGTGCGGTTTCACGCGGGA
AATCGTGGTTCCCAGAGTTTCTTCGATATTATCGCCAACCGGTGGGCTTT
GGAATAGAGGTGCTCTATGACAAGTTAATTCGTTGAACGTCAAATATTGT
TGATTCGCCTTTGCATGTTGTGGTCCGTATTCTTTTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:129200..130788-

>mRNA_P-littoralis_Contig146.26.1 ID=mRNA_P-littoralis_Contig146.26.1|Name=mRNA_P-littoralis_Contig146.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1170bp|location=Sequence derived from alignment at P-littoralis_Contig146:129200..130788- (Pylaiella littoralis U1_48)
ATGGTGGTGCGTGTTTTTAACAGTTTCCGAGCCCTATACCGATCTTTGCA
AGCAGAAACGCCGGAGCGATTCCCGGTGTTACTTGCCGATTATCTTCAGA
GCTTGAGAGGTTTGCGGACCTCACATGATCTCGTCGTGCAACTCGCAGAT
TTCGAGAGCGATGTAGTGGCTTGGTCTTTCGGAGACCGTGCTGATGTTAT
CCGAAGTCCTGGCTTTGAGTTTGAGCTTGAGGTGCCCGACCTGGGAAGAA
ACGTTCCTGCCCTGATCGGCCTCGGCCTGTGCTCGGGCTCAGCTGAAACA
GTAGACGGAAAGCAGTATCTGCTGTATCCCGTACTGACGTGCCTCGCCAG
CGCTGGAGAGACATTCGACCCCCCGCTCCGTCGGCGGTTTCCCGTGGGAG
ACGTGGACTCCATGGAATCGGGTTCCGACCGCGGCAGCCATGATGACGCT
GACCGGGCGTACCGTGCCCACCTTGAGTCCGTCTTTTCGGCTTTGACGCG
AGAAGACGCTAATTCAGAGTGGGTCCCGATTGATGGTGACATCGTGCAAG
CGGACGGGGGTATTTTCGTTCTGAAGGTGACGGTAAAGCACTTTTGCGAA
TTCGCCCTCAGGCAAACGATCGACGTAAAAGCCGGTCATGCGGAACCGGT
TCCATTACCAAAGCTCAGGTTTAAGAGTAGAGAGTCGCATTACCACTTCG
TCAATCTAGGCACGCAGCACCTCATGGTCCGCTGTTGGGGCACTACTCGG
AAAAAGGCTTTCTTAAACGGTGTAAAGGTGAACGCAGGAGTTGGACCCAG
GAGCGGGGCGAACGTTGGGGGAGAGGTGACACGAACGCTCGTAGACGGGT
CTAGCACTGGGGTTTTCACGTTCGGCGTGCCTGGTGGACCCGCCACCGAA
ACCGGGGATCAGGTTTGCGTGCAGCTTGATGAAGTGGAGTCGCTGACAGT
AGTGTGGACAACTCAGGAACAAGAATCAGCATCGCGGCAATCGTGGTGGT
CGGGTGATGGTGGCCACGAGCTAGTTCAGGTCTGGGGCAAAATCTCCATG
AAAAGTAAGCAGGTCTTGGTGTTCGGACCCGAGCTGGAGGGCGCGAGGCC
TATCGTGGCAGACTTGGTAGTGAATAAGGGCAATAGTGTAGGTAAAGCTG
TGAAGGCGGCGATAGAATGA
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