mRNA_P-littoralis_Contig146.20.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 263 bits (673), Expect = 1.350e-84 Identity = 124/182 (68.13%), Postives = 151/182 (82.97%), Query Frame = 3
Query: 276 VRANKATAVNADTITVFVHPLGKESLQHITSKFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSNWSDKKRKLVYSAPPTK 821
VR NK + +DT VFV+PLGKESL+HI+ ++ADLL+ LPG+DVF+KFGLKLYS QN++FRARKGDK R+CCSRKGWITVP++EAYD+IL+ LV+KT+EAV MF I Y DHF+ H++SIL +KDS VP+QRKLYERRRNKVLNNIAV+VTDNL R+ WSDKKRKLVY A PT+
Sbjct: 92 VRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 273
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 266 bits (680), Expect = 2.500e-84 Identity = 128/182 (70.33%), Postives = 151/182 (82.97%), Query Frame = 3
Query: 276 VRANKATAVNADTITVFVHPLGKESLQHITSKFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSNWSDKKRKLVYSAPPTK 821
VR NK V ADT VFV+PLGKESLQHITS ++ADLL+ LPG+DVF+KFGLKLYS QN++FRARKGDK R+CCSRKGWITVP++EAYD+IL+ LV+KT+EAV MF I Y DHF+ +++SIL KDS VP+QRKLYERRRNKVLNNIAV+VTDNL R+ WSDKKRKLVY A PT+
Sbjct: 190 VRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 371
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 224 bits (572), Expect = 1.300e-69 Identity = 116/180 (64.44%), Postives = 134/180 (74.44%), Query Frame = 3
Query: 276 VRANKATAVNADTITVFVHPLGKESLQHITSKFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSNWSDKKRKLVYSAPP 815
V NK V A+T VFVHPLGKESLQH TS FIADLL+ LPG+DVF+KFGLKLYS QN++FR RKGDK R+CCSRKGWITVP+EEAYD+IL+ LV KT+EAV + IL +KDS P+QRKLYERRR +LNNIAV+VTDN+ R+S WSDKKRKLVY APP
Sbjct: 92 VCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPP 250
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 161 bits (408), Expect = 2.740e-42 Identity = 86/166 (51.81%), Postives = 113/166 (68.07%), Query Frame = 3
Query: 291 ATAVNADTITVFVHPLGKESLQHITSKFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSNWSDKK 788
+T ADT T+ V+PLG+ESLQHIT +++ DLLK V VF KFGLKLYS QNV+FR RK VR+ K WITV K+EAYD+IL LV+KT EAV M+ +S ++HF +L+ +DS VP+++KLYE+RRNK L+ IAV+V LS+L W K+
Sbjct: 99 STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKR 263
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 162 bits (409), Expect = 2.260e-41 Identity = 86/166 (51.81%), Postives = 113/166 (68.07%), Query Frame = 3
Query: 291 ATAVNADTITVFVHPLGKESLQHITSKFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSNWSDKK 788
+T ADT T+ V+PLG+ESLQHIT +++ DLLK V VF KFGLKLYS QNV+FR RK VR+ K WITV K+EAYD+IL LV+KT EAV M+ +S ++HF +L+ +DSPVP+++KLYE+ RNK L+ IAV+V LS+L W K+
Sbjct: 2227 STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 135 bits (341), Expect = 8.790e-36 Identity = 79/135 (58.52%), Postives = 87/135 (64.44%), Query Frame = 3
Query: 369 KFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSN 773
+FIADLL TL GVDVF+KFG+KLY EQNV+FRARKGDK+V SGV+ +IDHFEK AESILD KDS VP+QRKLYER RNKVLNNIAV VTDNLSRLSN
Sbjct: 98 EFIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRLSN 196 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig146.20.1 >prot_P-littoralis_Contig146.20.1 ID=prot_P-littoralis_Contig146.20.1|Name=mRNA_P-littoralis_Contig146.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp MALRHRKLRVKANPSCLDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQback to top mRNA from alignment at P-littoralis_Contig146:88290..89110- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig146.20.1 ID=mRNA_P-littoralis_Contig146.20.1|Name=mRNA_P-littoralis_Contig146.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=821bp|location=Sequence derived from alignment at P-littoralis_Contig146:88290..89110- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig146:88290..89110- >mRNA_P-littoralis_Contig146.20.1 ID=mRNA_P-littoralis_Contig146.20.1|Name=mRNA_P-littoralis_Contig146.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig146:88290..89110- (Pylaiella littoralis U1_48)back to top |