mRNA_P-littoralis_Contig146.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.19.1
Unique NamemRNA_P-littoralis_Contig146.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig146.19.1 vs. uniprot
Match: Q8QNC6_ESV1K (EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC6_ESV1K)

HSP 1 Score: 142 bits (359), Expect = 2.010e-37
Identity = 80/158 (50.63%), Postives = 102/158 (64.56%), Query Frame = 3 
Query:  285 QTGSAKEIKGEAVAQKNYHGKGLAPKILQYRPAHKKAGRRVPGKKRLRKSAHERLNDLEYDDD----DIEYHPRGHLVHIIVMEEIAGVIGDWLHPLKSKEQLGQLTFNIFYLLDSFRRHKVTHADLHLWNLGYVYTDASKKHLKLMPIDFGRSSKGK 746
            QTG AK ++GE  AQ+ +H +GLAPKI++Y             K RL   AHERLN    D        +  P G+LVH+I+MEEIAGV+G WL   KS +QL +  F I  L+ +FR H +TH DLHL N+GYVYTDASK++++LMPIDFGRS  GK
Sbjct:   98 QTGDAKRLRGELSAQRAFHKRGLAPKIIRYCS--------FKPKTRLGMVAHERLNRAVQDKSVPFQTEDESPAGNLVHVIIMEEIAGVLGQWLRREKSNQQLHKTAFEITKLMVAFRNHGLTHGDLHLNNIGYVYTDASKRYMRLMPIDFGRSYVGK 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNC6_ESV1K2.010e-3750.63EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:68760..69558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size746
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.2525363-UTR-P-littoralis_Contig146:68759..691131680789686.2525363-UTR-P-littoralis_Contig146:68759..69113Pylaiella littoralis U1_48UTRP-littoralis_Contig146 68760..69113 -
1680789686.2630413-UTR-P-littoralis_Contig146:69166..692491680789686.2630413-UTR-P-littoralis_Contig146:69166..69249Pylaiella littoralis U1_48UTRP-littoralis_Contig146 69167..69249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.271062-CDS-P-littoralis_Contig146:69249..695581680789686.271062-CDS-P-littoralis_Contig146:69249..69558Pylaiella littoralis U1_48CDSP-littoralis_Contig146 69250..69558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.19.1prot_P-littoralis_Contig146.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 69250..69558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.19.1

>prot_P-littoralis_Contig146.19.1 ID=prot_P-littoralis_Contig146.19.1|Name=mRNA_P-littoralis_Contig146.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
SRLKKVATRSRPSVWCELSQLQARRLILKVGLGRDLVPRDLPTAKTPNRL
YETLTSMLKAACVKRLEVTKFISEGLFGHVFRALRNDGTRAVIKVRLVPR
RK*
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mRNA from alignment at P-littoralis_Contig146:68760..69558-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.19.1 ID=mRNA_P-littoralis_Contig146.19.1|Name=mRNA_P-littoralis_Contig146.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=799bp|location=Sequence derived from alignment at P-littoralis_Contig146:68760..69558- (Pylaiella littoralis U1_48)
AGCAGGCTCAAGAAGGTAGCGACTCGCTCACGGCCAAGTGTGTGGTGCGA
GCTGTCGCAACTCCAGGCTCGTCGTCTGATTCTCAAGGTGGGCCTTGGTC
GCGATCTCGTGCCTCGAGACCTACCCACCGCGAAAACCCCCAACAGGCTG
TATGAAACGCTGACGAGCATGCTCAAAGCTGCATGTGTCAAGAGGCTGGA
GGTTACGAAATTCATCTCCGAGGGATTGTTCGGCCACGTCTTCCGCGCGC
TGAGAAATGATGGCACCAGAGCAGTAATCAAAGTCAGACTGGTTCCGCGA
AGGAAATAAAGGGCGAAGCAGTTGCTCAAAAGAATTACCACGGTAAGGGT
CTTGCCCCCAAGATACTACAGTACCGGCCCGCTCATAAGAAAGTTGCCTA
CAAGAAAGTGAGGCTGAGATTCTTCAAAATTAAGAAAGCGTCAAGGCTGG
GCGACGAGTGCCAGGTAAAAAACGACTGAGAAAATCGGCACACGAGCGAC
TGAACGACCTCGAATACGATGATGACGACATAGAGTATCACCCCCGGGGC
CATTTGGTCCACATCATCGTGATGGAGGAGATTGCTGGCGTTATCGGTGA
CTGGCTACATCCCCTAAAGTCAAAAGAACAGCTCGGACAGCTTACGTTCA
ATATTTTTTATCTATTGGATTCTTTCAGAAGGCACAAAGTGACACATGCC
GATCTACACTTGTGGAACTTGGGGTACGTGTACACCGACGCGTCGAAGAA
ACATCTGAAGCTGATGCCGATTGATTTTGGGAGGTCTAGCAAAGGAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:68760..69558-

>mRNA_P-littoralis_Contig146.19.1 ID=mRNA_P-littoralis_Contig146.19.1|Name=mRNA_P-littoralis_Contig146.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig146:68760..69558- (Pylaiella littoralis U1_48)
AGCAGGCTCAAGAAGGTAGCGACTCGCTCACGGCCAAGTGTGTGGTGCGA
GCTGTCGCAACTCCAGGCTCGTCGTCTGATTCTCAAGGTGGGCCTTGGTC
GCGATCTCGTGCCTCGAGACCTACCCACCGCGAAAACCCCCAACAGGCTG
TATGAAACGCTGACGAGCATGCTCAAAGCTGCATGTGTCAAGAGGCTGGA
GGTTACGAAATTCATCTCCGAGGGATTGTTCGGCCACGTCTTCCGCGCGC
TGAGAAATGATGGCACCAGAGCAGTAATCAAAGTCAGACTGGTTCCGCGA
AGGAAATAA
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