mRNA_P-littoralis_Contig146.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.18.1
Unique NamemRNA_P-littoralis_Contig146.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig146.18.1 vs. uniprot
Match: A0A6H5JMD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD7_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 2.870e-92
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 1 
Query:    1 GLSASAGSGSVVGDKRPSVQPSCDKGDASCKGVESIDEANQPPRKRVKRGTFSVDLMPLLLRMNALFNEKVVEMKLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQ 438
            GLSASAGSGSVVGDKRPS QPSCDK D+SCKGVESID ANQPPRKRVKRGTFSVDL PLLLRMNALFNEKVVEMKLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQ
Sbjct:  194 GLSASAGSGSVVGDKRPSAQPSCDKRDSSCKGVESIDAANQPPRKRVKRGTFSVDLTPLLLRMNALFNEKVVEMKLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQ 339
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BLAST of mRNA_P-littoralis_Contig146.18.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 1.800e-85
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 1 
Query:    1 GLSASAGSGSVVGDKRPSVQPSCDKGDASCKGVESIDEANQPPRKRVKRGTFSVDLMPLLLRMNALFNEKVVEMKLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQ 438
            GLSASAGSGSVV DKR SVQPSCDKGDASCKGVESIDEA+QPPRKR+KRGTFSVDLMPLLLRMNALFNEKVVEMKLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQ
Sbjct: 1649 GLSASAGSGSVVSDKRSSVQPSCDKGDASCKGVESIDEASQPPRKRMKRGTFSVDLMPLLLRMNALFNEKVVEMKLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQ 1794
[Close]
BLAST of mRNA_P-littoralis_Contig146.18.1 vs. uniprot
Match: A0A6H5KG30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG30_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 9.050e-55
Identity = 96/109 (88.07%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:  112 EANQPPRKRVKRGTFSVDLMPLLLRMNALFNEKVVEMKLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQ 438
            EA+QPPRKR+KRGTFSVDLMPLLLRM           KLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQ
Sbjct:  465 EASQPPRKRMKRGTFSVDLMPLLLRM-----------KLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQ 562
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JMD7_9PHAE2.870e-9296.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4R3_9PHAE1.800e-8597.26PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KG30_9PHAE9.050e-5588.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:67624..68062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size441
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.2212508-CDS-P-littoralis_Contig146:67623..680611680789686.2212508-CDS-P-littoralis_Contig146:67623..68061Pylaiella littoralis U1_48CDSP-littoralis_Contig146 67624..68061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.18.1prot_P-littoralis_Contig146.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 67624..68061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.18.1

>prot_P-littoralis_Contig146.18.1 ID=prot_P-littoralis_Contig146.18.1|Name=mRNA_P-littoralis_Contig146.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
GLSASAGSGSVVGDKRPSVQPSCDKGDASCKGVESIDEANQPPRKRVKRG
TFSVDLMPLLLRMNALFNEKVVEMKLVPGKSYPRRTLENCMYHVSTFGGL
CKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQ
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mRNA from alignment at P-littoralis_Contig146:67624..68062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.18.1 ID=mRNA_P-littoralis_Contig146.18.1|Name=mRNA_P-littoralis_Contig146.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=439bp|location=Sequence derived from alignment at P-littoralis_Contig146:67624..68062+ (Pylaiella littoralis U1_48)
GGGCTTAGTGCGAGCGCGGGGTCGGGTTCGGTGGTAGGTGACAAGCGCCC
TTCTGTCCAACCCTCTTGTGACAAGGGAGATGCGTCGTGTAAGGGTGTCG
AGAGCATCGACGAGGCCAACCAGCCCCCAAGAAAGCGGGTGAAGAGGGGT
ACATTTTCGGTCGACCTTATGCCTCTCTTGCTGCGGATGAATGCGCTTTT
CAACGAGAAGGTTGTCGAGATGAAGTTGGTTCCGGGTAAGTCATATCCGC
GACGCACATTGGAGAATTGCATGTACCATGTTTCTACGTTTGGCGGATTG
TGTAAGGATCAGGTCAGAGAGTACATGGTGGCGCACGTTGGGGAGGACGA
TTCCAGTCGTAGCGATGTGCTTCAATTCTACGAACTGTTTCCCATAAGAA
AGAAAGAGAAAATGGTCAGGGATATTGTTGGGAGGCAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:67624..68062+

>mRNA_P-littoralis_Contig146.18.1 ID=mRNA_P-littoralis_Contig146.18.1|Name=mRNA_P-littoralis_Contig146.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig146:67624..68062+ (Pylaiella littoralis U1_48)
GGGCTTAGTGCGAGCGCGGGGTCGGGTTCGGTGGTAGGTGACAAGCGCCC
TTCTGTCCAACCCTCTTGTGACAAGGGAGATGCGTCGTGTAAGGGTGTCG
AGAGCATCGACGAGGCCAACCAGCCCCCAAGAAAGCGGGTGAAGAGGGGT
ACATTTTCGGTCGACCTTATGCCTCTCTTGCTGCGGATGAATGCGCTTTT
CAACGAGAAGGTTGTCGAGATGAAGTTGGTTCCGGGTAAGTCATATCCGC
GACGCACATTGGAGAATTGCATGTACCATGTTTCTACGTTTGGCGGATTG
TGTAAGGATCAGGTCAGAGAGTACATGGTGGCGCACGTTGGGGAGGACGA
TTCCAGTCGTAGCGATGTGCTTCAATTCTACGAACTGTTTCCCATAAGAA
AGAAAGAGAAAATGGTCAGGGATATTGTTGGGAGGCAG
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