mRNA_P-littoralis_Contig146.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.17.1
Unique NamemRNA_P-littoralis_Contig146.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig146.17.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 2.700e-68
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 
Query:    1 MCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAGVSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGRLVFVLPPVGKNSRTLVKSVIGMVVNHA 339
            MCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAGVSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGRLVFVLPPVGKNSRTLVKSVIGMVVNHA
Sbjct: 1208 MCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAGVSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGRLVFVLPPVGKNSRTLVKSVIGMVVNHA 1320
[Close]
BLAST of mRNA_P-littoralis_Contig146.17.1 vs. uniprot
Match: A0A6H5KG30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG30_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.220e-62
Identity = 109/140 (77.86%), Postives = 110/140 (78.57%), Query Frame = 1 
Query:    1 MCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAG---------------------------VSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGRLVFVLPPVGKNSRTLVKSVIGMVVNHA 339
            MCLDVLHDGGGATIGKRDDERHLYP+KYEEQIDEVVGVLAKAG                           VSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGRLV VL PVGKNSRTLV SVIGMVVNHA
Sbjct:   54 MCLDVLHDGGGATIGKRDDERHLYPDKYEEQIDEVVGVLAKAGXXXXXXXXXXXXXXXXXXXXXXXXXARVSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGRLVIVLTPVGKNSRTLVNSVIGMVVNHA 193
[Close]
BLAST of mRNA_P-littoralis_Contig146.17.1 vs. uniprot
Match: D7FKZ5_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ5_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.140e-33
Identity = 70/119 (58.82%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:    1 MCLDVLHDGGGAT------IGKRDDERHLYPEKYEEQIDEVVGVLAKAGVSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGRLVFVLPPVGKNSRTLVKSVIGMVVNHA 339
            MC++VL D   AT      +GKR DE HLYP+ Y  QID VVG+   +GV   DL  FS  L ILDSLT+ACLRPQD LGCLA + YVK  RL+FVLPP  KNS  L KS IG+VV HA
Sbjct: 1309 MCMEVLEDKSDATHNKNRYLGKRLDEDHLYPDSYRAQIDAVVGMFWDSGVDASDLASFSQGLQILDSLTAACLRPQDWLGCLASQVYVKGTRLIFVLPPECKNSEALKKSDIGLVVTHA 1427
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE2.700e-68100.00PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KG30_9PHAE2.220e-6277.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKZ5_ECTSI2.140e-3358.82PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:66141..66479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.1858854-CDS-P-littoralis_Contig146:66140..664791680789686.1858854-CDS-P-littoralis_Contig146:66140..66479Pylaiella littoralis U1_48CDSP-littoralis_Contig146 66141..66479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.17.1prot_P-littoralis_Contig146.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 66141..66479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.17.1

>prot_P-littoralis_Contig146.17.1 ID=prot_P-littoralis_Contig146.17.1|Name=mRNA_P-littoralis_Contig146.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAGVSTEDLE
RFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGRLVFVLPPVGKNSRT
LVKSVIGMVVNHA
back to top

mRNA from alignment at P-littoralis_Contig146:66141..66479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.17.1 ID=mRNA_P-littoralis_Contig146.17.1|Name=mRNA_P-littoralis_Contig146.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig146:66141..66479+ (Pylaiella littoralis U1_48)
ATGTGTCTGGACGTGCTTCACGACGGCGGGGGGGCTACCATCGGGAAGCG
CGATGACGAGAGGCACCTGTATCCCGAGAAGTACGAGGAACAGATCGACG
AGGTGGTCGGCGTTTTGGCGAAGGCGGGGGTTTCCACCGAAGACCTGGAG
CGGTTCAGCTGCGCCCTCCACATCCTCGACTCGCTCACGTCAGCTTGCCT
TCGGCCTCAAGATTCGCTAGGGTGTCTGGCGTGCAAGGCGTACGTGAAGA
ATGGCCGATTGGTGTTTGTCCTCCCACCGGTCGGAAAAAACTCCAGGACC
CTGGTCAAGAGCGTAATTGGGATGGTGGTGAACCACGCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig146:66141..66479+

>mRNA_P-littoralis_Contig146.17.1 ID=mRNA_P-littoralis_Contig146.17.1|Name=mRNA_P-littoralis_Contig146.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig146:66141..66479+ (Pylaiella littoralis U1_48)
ATGTGTCTGGACGTGCTTCACGACGGCGGGGGGGCTACCATCGGGAAGCG
CGATGACGAGAGGCACCTGTATCCCGAGAAGTACGAGGAACAGATCGACG
AGGTGGTCGGCGTTTTGGCGAAGGCGGGGGTTTCCACCGAAGACCTGGAG
CGGTTCAGCTGCGCCCTCCACATCCTCGACTCGCTCACGTCAGCTTGCCT
TCGGCCTCAAGATTCGCTAGGGTGTCTGGCGTGCAAGGCGTACGTGAAGA
ATGGCCGATTGGTGTTTGTCCTCCCACCGGTCGGAAAAAACTCCAGGACC
CTGGTCAAGAGCGTAATTGGGATGGTGGTGAACCACGCA
back to top