mRNA_P-littoralis_Contig146.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.92.1
Unique NamemRNA_P-littoralis_Contig146.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:354450..354800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size353
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionMetacaspase
Ec32 orthologEc-14_001720.2
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.874121-CDS-P-littoralis_Contig146:354449..3547971680789685.874121-CDS-P-littoralis_Contig146:354449..354797Pylaiella littoralis U1_48CDSP-littoralis_Contig146 354450..354797 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.893272-UTR-P-littoralis_Contig146:354797..3548001680789685.893272-UTR-P-littoralis_Contig146:354797..354800Pylaiella littoralis U1_48UTRP-littoralis_Contig146 354798..354800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.92.1prot_P-littoralis_Contig146.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 354450..354797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.92.1

>prot_P-littoralis_Contig146.92.1 ID=prot_P-littoralis_Contig146.92.1|Name=mRNA_P-littoralis_Contig146.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MVMNHPRLRSENFMTHYPEHVNGGFFFVCTIFDGVSTHFPFFPQEIRKTQ
KPGDGPETSPVLKSGQIDLRISGYGNFWVGITNPRSVLFNSILAFFEIQV
HIEQHRLAKKIKNISR
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mRNA from alignment at P-littoralis_Contig146:354450..354800-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.92.1 ID=mRNA_P-littoralis_Contig146.92.1|Name=mRNA_P-littoralis_Contig146.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig146:354450..354800- (Pylaiella littoralis U1_48)
GGGATGGTGATGAACCATCCCCGGCTAAGGTCTGAAAATTTTATGACACA
CTACCCCGAACATGTAAATGGTGGATTTTTTTTTGTTTGTACTATTTTTG
ACGGGGTTTCAACTCATTTCCCCTTTTTCCCTCAGGAAATTCGCAAAACG
CAAAAACCCGGGGATGGGCCTGAAACATCCCCGGTTTTGAAAAGTGGTCA
GATTGATCTGAGAATTTCCGGCTATGGTAATTTTTGGGTGGGGATTACGA
ATCCGCGGTCGGTTCTTTTCAATTCGATTTTGGCTTTCTTTGAGATTCAG
GTACACATTGAACAGCATCGCCTTGCCAAGAAAATCAAAAATATTTCAAG
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:354450..354800-

>mRNA_P-littoralis_Contig146.92.1 ID=mRNA_P-littoralis_Contig146.92.1|Name=mRNA_P-littoralis_Contig146.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig146:354450..354800- (Pylaiella littoralis U1_48)
ATGGTGATGAACCATCCCCGGCTAAGGTCTGAAAATTTTATGACACACTA
CCCCGAACATGTAAATGGTGGATTTTTTTTTGTTTGTACTATTTTTGACG
GGGTTTCAACTCATTTCCCCTTTTTCCCTCAGGAAATTCGCAAAACGCAA
AAACCCGGGGATGGGCCTGAAACATCCCCGGTTTTGAAAAGTGGTCAGAT
TGATCTGAGAATTTCCGGCTATGGTAATTTTTGGGTGGGGATTACGAATC
CGCGGTCGGTTCTTTTCAATTCGATTTTGGCTTTCTTTGAGATTCAGGTA
CACATTGAACAGCATCGCCTTGCCAAGAAAATCAAAAATATTTCAAGA
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