mRNA_P-littoralis_Contig146.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.10.1
Unique NamemRNA_P-littoralis_Contig146.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:55760..58092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size851
Hectar predicted targeting categoryother localisation
Exons3
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.4504538-UTR-P-littoralis_Contig146:55759..560601680789685.4504538-UTR-P-littoralis_Contig146:55759..56060Pylaiella littoralis U1_48UTRP-littoralis_Contig146 55760..56060 +
1680789685.4605398-UTR-P-littoralis_Contig146:56534..565541680789685.4605398-UTR-P-littoralis_Contig146:56534..56554Pylaiella littoralis U1_48UTRP-littoralis_Contig146 56535..56554 +
1680789685.4930809-UTR-P-littoralis_Contig146:58042..580921680789685.4930809-UTR-P-littoralis_Contig146:58042..58092Pylaiella littoralis U1_48UTRP-littoralis_Contig146 58043..58092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.4743767-CDS-P-littoralis_Contig146:56554..568031680789685.4743767-CDS-P-littoralis_Contig146:56554..56803Pylaiella littoralis U1_48CDSP-littoralis_Contig146 56555..56803 +
1680789685.484621-CDS-P-littoralis_Contig146:57811..580421680789685.484621-CDS-P-littoralis_Contig146:57811..58042Pylaiella littoralis U1_48CDSP-littoralis_Contig146 57812..58042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.10.1prot_P-littoralis_Contig146.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 56555..58042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.10.1

>prot_P-littoralis_Contig146.10.1 ID=prot_P-littoralis_Contig146.10.1|Name=mRNA_P-littoralis_Contig146.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
MSTGDRAIEASLQRLQEDKDRFLTTQSAGNDSALVSSIGSYAGALRGAGR
HEEAQDIDRKRHEFKTAGSGKKLTIARGLTKTLGGAARALVAHDVAADVL
IEVGADVAAEILQDVLVPGMAIATVFRVGWRIVFGRRQRGDRRRFVFAAF
RAAITGGVL*
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mRNA from alignment at P-littoralis_Contig146:55760..58092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.10.1 ID=mRNA_P-littoralis_Contig146.10.1|Name=mRNA_P-littoralis_Contig146.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2333bp|location=Sequence derived from alignment at P-littoralis_Contig146:55760..58092+ (Pylaiella littoralis U1_48)
CGCGCATCATGTCATAATATCCAGATATCATCATAGACCCACCGATCAAA
AAGCCGATTTTCTGTTGCAATCCAAGTACCCCAGCTCCCTCTCCCTCCTC
TGTTCATCACGGCAGTCAAACTTTACTTGTATCTGAGCGGTGGGCACGCT
GACCCAACACAACATACCGAACGGACGCTTCACAAGATCCACCTCGGACC
TACCACTCCTACTGCTTGACGGCGCGAGGAGGTGAACTGTACGGCGTGCC
TGCTGCTGCTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGGAACCA
GGTGTGTGTGAGTGTCGAATCATACTACAGCAAGCAGTACCACATTCAGC
CGTTCTTGCATGTCCATCGCCAACAAACGCCGGCCACACAAAGACAACGC
GAGCTGAAAGCTTGTTATGGCGTTTCTGGTTGATCCCGCTTGGCTCAGAG
CCCACAATCATCACCGATGGTTTGGCCTCCAGGCCTTTACATGTGCCTCA
TGTCCTCGTCGTCCCGCATCTCCATGCACCCTCCTCGCGTGAGTTCATCT
AACGTGAAAGAACATGATACATGATCCACCAAAACACTGCTGTACCTACA
GCAGTAGTTCCGCCTCTCACATTCATACACACATACATCGTCATGTCCAC
ACAGCATCAACACAAAAAATCTGCGCTACCTTATTCTGAATACGGTGCGG
TCATTTTTTGTCGGCAACGTCAGACTCTCCTTCTCCCGCACGTTTTTCGG
TATCATGTCATGCGAGATAGGATAGCTGGCGGCGATCGCGGCGATATGTC
GACCGGTGATCGGGCGATAGAAGCAAGTCTGCAACGGCTCCAGGAGGATA
AAGATAGGTTCCTCACAACTCAGAGCGCGGGCAACGACTCCGCTCTGGTG
TCTTCTATAGGCTCTTACGCAGGCGCGTTACGGGGGGCTGGACGGCATGA
GGAAGCTCAAGATATTGACAGGAAAAGACACGAGTTCAAGACTGCCGGGT
CCGGAAAGAAACTGACCATAGCCCGAGGGCTCACAAAAACTCTGGTGAGG
GTTTTAAGTGTTGCGGTGTTTTTAGAACCCGTTGGTCGCTTTGACAACAC
AATATTCGAAGGTGGTGTGATCAGCGTTCGATTCTTCATCCTCCACTCAC
TGCTGTCTATGCCCTAGTCTCTCGAGAGCTGGTATCCATGCGGTACATCT
CATTGTCCGATCGCTTTAGTGTTGAATTTTGACTCCCCCCCTGGCAGTGT
TAAACACATGTTGAACGCGCACTTTCGATTGGAACCCGCCGTTTTCGCCA
AAGTAAAGACTTTAACTCCCTCCGCGCGTTAAGCATCGTGGAGAGCCACA
CATCTCGAGGACTATATATGTCCACAACACACGCCGAAAAATGTACTTTT
TCGGTTGCCTGCGCGCTCACAGAGATCATCCGCCCGAGCTCCCGTGGGTG
GAAAATGAACCAGACGAGCGCAGTCTACGTTTACGAAAATACTGGACTCG
ATTTTCTTTTCATTGCGCTTGCCACATGCCCCGCTCCAAATACGTGTTTG
TTTGCATATGTGAATGTAGGTGATATAGATCAGAATCTTGAGAGGTTTTG
CTTATTCAACAAACTCGAGAACCTGGAGACGCGCGGTCATTTGTCGAGCT
GTCATGAGGCCGGATCAGCATGAAAAAAGCCCCTAGTGCAATTGCGTATA
ACATTAATTAAAACAGGTGCGCAATAAACCGATGTCGTGCAAATACACTG
AAAAAGCCCAGCCGATGCAGCAGCATCCGTCAAAGGATTCAACACAAAGA
TTAACACGAAGACACAAACCGTCAAGAATAGCGACGGCCCGTCGCAGAAA
AATGAGGAACAACACGAAGATTATACAAACAAATATGAGCGCTTCAGTGC
CATATTTCATCGTATGTATGCACGACAACATCCGTCACCAAACGGCCGAA
TTACGTACAAGGAGAGAAAAAAGTGGCACCAAAAGTCAGTACCAAGAAAC
CCACACGCCGTGCTCACTCTTCACTGCTGCACTATGTATTCCCCTCACGC
AGGGAGGCGCTGCTCGGGCTCTCGTCGCTCACGACGTGGCGGCAGATGTT
CTGATTGAGGTAGGGGCGGACGTTGCTGCCGAGATCTTACAAGATGTTCT
CGTCCCGGGCATGGCAATCGCGACCGTGTTCAGGGTCGGGTGGCGCATCG
TCTTCGGAAGGCGCCAGCGTGGGGATCGGCGAAGATTTGTGTTCGCTGCA
TTCCGGGCGGCTATTACGGGTGGAGTTCTCTAGGTAGTGGTTGGACGGCG
TCCCCGACAAGGGATGGTGAAACCCGAGATGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:55760..58092+

>mRNA_P-littoralis_Contig146.10.1 ID=mRNA_P-littoralis_Contig146.10.1|Name=mRNA_P-littoralis_Contig146.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig146:55760..58092+ (Pylaiella littoralis U1_48)
ATGTCGACCGGTGATCGGGCGATAGAAGCAAGTCTGCAACGGCTCCAGGA
GGATAAAGATAGGTTCCTCACAACTCAGAGCGCGGGCAACGACTCCGCTC
TGGTGTCTTCTATAGGCTCTTACGCAGGCGCGTTACGGGGGGCTGGACGG
CATGAGGAAGCTCAAGATATTGACAGGAAAAGACACGAGTTCAAGACTGC
CGGGTCCGGAAAGAAACTGACCATAGCCCGAGGGCTCACAAAAACTCTGG
GAGGCGCTGCTCGGGCTCTCGTCGCTCACGACGTGGCGGCAGATGTTCTG
ATTGAGGTAGGGGCGGACGTTGCTGCCGAGATCTTACAAGATGTTCTCGT
CCCGGGCATGGCAATCGCGACCGTGTTCAGGGTCGGGTGGCGCATCGTCT
TCGGAAGGCGCCAGCGTGGGGATCGGCGAAGATTTGTGTTCGCTGCATTC
CGGGCGGCTATTACGGGTGGAGTTCTCTAG
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