mRNA_P-littoralis_Contig1451.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1451.3.1
Unique NamemRNA_P-littoralis_Contig1451.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1451.3.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.610e-19
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  137 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLG 292
            NFGRS+YARK GLDK  GYI SADDSKLEELMDILRFF++WR +LE + TLG
Sbjct:   25 NFGRSDYARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLG 76
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BLAST of mRNA_P-littoralis_Contig1451.3.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.300e-19
Identity = 40/53 (75.47%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:  137 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGD 295
            NFGRSEYAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD
Sbjct:  551 NFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGD 603
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BLAST of mRNA_P-littoralis_Contig1451.3.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.070e-17
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  137 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGD 295
            NFGRS+YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + TLGD
Sbjct:   38 NFGRSDYARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD 90
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BLAST of mRNA_P-littoralis_Contig1451.3.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.580e-16
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:  134 RNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGD 295
            RNFGRS+YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + TLGD
Sbjct:  427 RNFGRSDYARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGD 480
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BLAST of mRNA_P-littoralis_Contig1451.3.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-10
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 2 
Query:  185 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGD 295
            AGYI SADDSKLEELMDILRF  +WR +LE ++TLGD
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGD 38
[Close]
BLAST of mRNA_P-littoralis_Contig1451.3.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.420e-8
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 2 
Query:  188 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGD 295
            GYI S DDSKL+ELMDIL FF++WR +LE + TLGD
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGD 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1451.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KH17_9PHAE2.610e-1976.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE4.300e-1975.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE2.070e-1773.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE7.580e-1670.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE1.590e-1075.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE3.420e-869.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1451contigP-littoralis_Contig1451:13246..15262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789684.8764796-CDS-P-littoralis_Contig1451:13246..134091680789684.8764796-CDS-P-littoralis_Contig1451:13246..13409Pylaiella littoralis U1_48CDSP-littoralis_Contig1451 13247..13409 -
1680789684.8921542-CDS-P-littoralis_Contig1451:15128..152621680789684.8921542-CDS-P-littoralis_Contig1451:15128..15262Pylaiella littoralis U1_48CDSP-littoralis_Contig1451 15129..15262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1451.3.1prot_P-littoralis_Contig1451.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1451 13247..15262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1451.3.1

>prot_P-littoralis_Contig1451.3.1 ID=prot_P-littoralis_Contig1451.3.1|Name=mRNA_P-littoralis_Contig1451.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
RLPTGCRRCFRRRRRMREGRGHDRTPRPPRVIVHWRATAALRDHEKLRPL
GVRAQERPRQESGLHYIGRRLQTRRTHGHLAFFREVAVQSGGEDDAGRR
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mRNA from alignment at P-littoralis_Contig1451:13246..15262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1451.3.1 ID=mRNA_P-littoralis_Contig1451.3.1|Name=mRNA_P-littoralis_Contig1451.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2017bp|location=Sequence derived from alignment at P-littoralis_Contig1451:13246..15262- (Pylaiella littoralis U1_48)
CGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATGAG
GGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGTGC
ATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCACC
ATAGAGTCCGGGGTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAATG
TTGTTGAGGAACACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTCCCG
CGTTTCCTTCCCCTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCTCGTA
CCTCTGTGTCGTCGTTTTTGATATAGGTGTGGACGCCCGCGTCCATCGCC
ACCTTAGAGTTTAGCGTACCGGCTTGTCGAGAACGACGGCGACAGCCTTT
CCACCGAGGAGCGAGTGGCATCCATCTCGACCTTCCGCAACTTGAAGCCG
GGGTGCTTCAACCGGAAAGCGAAGGTGGATCCAGTCTGCAGTGAACGTCG
GCAAGTCGTTGCCCTTGCAATGGTCCACGACGAGGCTCGACCCGATGGTC
TTCTCAAGAGATGACCAAGGAGCAATCGTGAAGGTCAGGGTCGCCTCAAT
CTTGAGTTGGCGACGATTGTCTCGGCGCCTAATATTGAGTGCCGAAGTAT
GTAGAGGATAATATATGTGTGGAACGATTTCACAGTGGCCCGTATAAATC
CCCTTGCCTCGTGTCATGCCGCATTTATATCCCACCTAGGGGTTACAAGC
TAGCGTTACTGAGCACGGCAAACATGGTAATGCTAAGCGCTTGCAGTACT
CTGTGTTGTGTTCGAAGGTCGTGTGCACGAATGGCTTGTAGACGATGCCG
AGAGGGGCGCATGCAGTCTCGATCCATCTCTCACCCGAGACCGTCCCATC
ATGTTGTCCGTTATTGTCCTAGATGCTATCGGGGACGATGGTTCGTATCA
TCGACAAGATTCAGTTCGACCGCGTGACCATGGGAGAATCACCCGACCTG
CTACGCAGCACTAGCGTCGAGGGTTGATGCCTTCATCGACATCTTCAACG
GCAAGTGATAGGTGTTCGTATTGTCGCAGTATGTGGAGGGGCCTGTCGCG
TGACTATGTTCCGTGCTCTCCTTTTTCCCCTGAAGTTTCCCGGCACCCGG
GTACACTCTTTCTCCATTGGTTGCTCCGAAGTCCGGAAATACCGGCAAAC
GCCCTGTCTCCCGGCGCAGCTCGTGACGGAGATTTTTTTGTTTAGCTTGA
TTGTTGAGTTTTCATGGGCTAAAAACCCGCCACACTTGTGTTCTAACGGG
ATTGAACAGATATCGTAATTTGCCAATAAAATCAATTATTATCGTTTTCA
AATAAGTCTGTTAAACAGAGATGTCGCACCAAAACAGCACATCGAAGACC
AATGAGTGCGGCAAACTATTCCTCTCATCATTGCCGCGAACTGTTTGTGG
CGTTGTTGGTGTTGGTGCAGGGGGTGGTGTTTGTGTCGTTTTTGTGTGAT
AAAATGTGCTGTGTAATGGCTGCAACGGATATATTTCGTGACATATTATG
CGGATGCCGGGGTGCGGAGTGCAGGATGGGGGCTCAGTGGTGACTTTTGG
GGCCCCGTGGAACGATTCTCGCAACAAATGATGCAATTAGCCAAAAACAT
AAATAACTCTGCAGCTATGTATCGACATATCTCGTATCGGCGATCACTAG
TATTGTTTCACGTCCCAACGCGATTGAACAAAAAGGAGAGCACGGACCTA
CTTGTTTTTTTTTTATATATTTCCTCGCGCAATGTACACACTCTGTGCGC
GTCGTTTGTCTCTTCCCACACGGCCCCATGTATGTGTATGTGTATATATT
CAGGAAACTTCGGCCGCTCGGAGTACGCGCGCAAGAAAGGCCTCGACAAG
AAAGCGGGCTACATTACATCGGCCGACGACTCCAAACTAGAAGAACTCAT
GGACATCTTGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGA
CGACGCTGGGCGACGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1451:13246..15262-

>mRNA_P-littoralis_Contig1451.3.1 ID=mRNA_P-littoralis_Contig1451.3.1|Name=mRNA_P-littoralis_Contig1451.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1451:13246..15262- (Pylaiella littoralis U1_48)
CGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATGAG
GGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGTGC
ATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGAAACTTCGGCCGCTC
GGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACAT
CGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTC
GAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGCTGGGCGACGT
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