mRNA_P-littoralis_Contig145.121.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.121.1
Unique NamemRNA_P-littoralis_Contig145.121.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig145.121.1 vs. uniprot
Match: D8LG89_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG89_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 1.400e-68
Identity = 107/127 (84.25%), Postives = 119/127 (93.70%), Query Frame = 2 
Query:  248 MGRIDCCARVCIGLSVPGIIFLIVIGILFDKQGFYTSVDVDDPSAAASDCYFAALLYVVAIGVSFGGIWYEKNGRQMMATRQEEVVHGDESAGLLGREDSGYGSLSYLSQMPLMPQGYSRSDNYVEG 628
            MG IDCCARVCIGLS+PGIIFLI+IGI+FDKQGFYTSV+VDDP+AAAS+CYFAALLYVVAIGVS GGI Y+KN R M+ T QEE+ HGDES+GLLGREDSGYGSL+YLSQMPLMPQGYSRSDNYV+G
Sbjct:    1 MGGIDCCARVCIGLSIPGIIFLIIIGIMFDKQGFYTSVEVDDPTAAASECYFAALLYVVAIGVSLGGICYDKNRRGMLVTTQEELAHGDESSGLLGREDSGYGSLTYLSQMPLMPQGYSRSDNYVDG 127
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BLAST of mRNA_P-littoralis_Contig145.121.1 vs. uniprot
Match: A0A7S3JPM2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPM2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-6
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 2 
Query:  233 PVPRRMGRIDCCARVCIGLSVPGIIFLIVIGILFDKQGFYTSVDVDDPSAAASDCYFAALLYVVAIGVSFGGIWYEK 463
            P PR +G    CA+ C   S  G++FLI+IGI+  K+  Y   D+D P  AAS C+ AA +Y+  I +S G +  +K
Sbjct:   10 PGPRSVG----CAKCCAIFSSTGVVFLILIGIILQKEPLYVR-DIDQPKKAASQCFGAAGIYIACIVISIGVLVSDK 81
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BLAST of mRNA_P-littoralis_Contig145.121.1 vs. uniprot
Match: A0A836CCG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCG9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.210e-6
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 2 
Query:  248 MGRIDCCARVCIGLSVPGIIFLIVIGILFDKQGFYTSVDV---DDPSAAASDCYFAALLYVVAIGVSFGGIWYEK 463
            M  +  C++ C  LS  GI+FL ++GILF++Q F+T+ +V   D    AA   Y+ A +Y + + +S  G+WY K
Sbjct:    1 MCSLPACSQCCCLLSGMGIVFLTILGILFEEQPFFTNPEVYHKDGSEEAAEAVYWGAFIYFITLLMSLYGMWYSK 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG89_ECTSI1.400e-6884.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3JPM2_9STRA1.040e-640.26Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A836CCG9_9STRA1.210e-637.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:414572..420447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1629
Hectar predicted targeting categorysignal anchor
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_004170.1
Cds size390
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.121.1prot_P-littoralis_Contig145.121.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 414819..419169 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789684.2311785-UTR-P-littoralis_Contig145:414571..4148181680789684.2311785-UTR-P-littoralis_Contig145:414571..414818Pylaiella littoralis U1_48UTRP-littoralis_Contig145 414572..414818 +
1680789684.2841513-UTR-P-littoralis_Contig145:419169..4198921680789684.2841513-UTR-P-littoralis_Contig145:419169..419892Pylaiella littoralis U1_48UTRP-littoralis_Contig145 419170..419892 +
1680789684.2950032-UTR-P-littoralis_Contig145:420178..4204471680789684.2950032-UTR-P-littoralis_Contig145:420178..420447Pylaiella littoralis U1_48UTRP-littoralis_Contig145 420179..420447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789684.242193-CDS-P-littoralis_Contig145:414818..4148371680789684.242193-CDS-P-littoralis_Contig145:414818..414837Pylaiella littoralis U1_48CDSP-littoralis_Contig145 414819..414837 +
1680789684.2562156-CDS-P-littoralis_Contig145:417887..4180281680789684.2562156-CDS-P-littoralis_Contig145:417887..418028Pylaiella littoralis U1_48CDSP-littoralis_Contig145 417888..418028 +
1680789684.2655056-CDS-P-littoralis_Contig145:418618..4187041680789684.2655056-CDS-P-littoralis_Contig145:418618..418704Pylaiella littoralis U1_48CDSP-littoralis_Contig145 418619..418704 +
1680789684.2758572-CDS-P-littoralis_Contig145:419025..4191691680789684.2758572-CDS-P-littoralis_Contig145:419025..419169Pylaiella littoralis U1_48CDSP-littoralis_Contig145 419026..419169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.121.1

>prot_P-littoralis_Contig145.121.1 ID=prot_P-littoralis_Contig145.121.1|Name=mRNA_P-littoralis_Contig145.121.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MGRIDCCARVCIGLSVPGIIFLIVIGILFDKQGFYTSVDVDDPSAAASDC
YFAALLYVVAIGVSFGGIWYEKNGRQMMATRQEEVVHGDESAGLLGREDS
GYGSLSYLSQMPLMPQGYSRSDNYVEGQG*
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mRNA from alignment at P-littoralis_Contig145:414572..420447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.121.1 ID=mRNA_P-littoralis_Contig145.121.1|Name=mRNA_P-littoralis_Contig145.121.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5876bp|location=Sequence derived from alignment at P-littoralis_Contig145:414572..420447+ (Pylaiella littoralis U1_48)
CAATCGTCGAAGTGTACCCCGCCCTTACCATCACAGGTATCAGGGATCGA
CGAGTGAAAGGGAGTCCTCTCATAGGGAGCTTTCAAGGAGAAAACATCAC
ACATCATCACGGATCGGAATATTGAAGGAGAGGTTCCATAATCATCACGG
ACAGACTCGACACGGAGACAGGAGAGGAGAGCACTGCCTAGAAGTACAAG
GAGGAGAGAGAGGGAGCGAGTGCGAGAAATAGCCAGTACCACGAAGGATG
GGGCGAATCGACTGCTGTGAGTACACTTTGTGTGCTGAGGAGCGAATGAA
ACAGAGCACGGCAGTAGGTGGAGATCAGCGTAATGCTGTAGTTCTGCTCG
CGTTGGTGGGAACACTGGTTTCTAGTTTCACATATCAAAGAAGAGCGGTG
ACCCAAATTCTCAAGTTCTCACCCGTTCACCATCGCACCCCACTGCTGTG
TGTGCGTGTGTGCCGGCGTCTTGTCTTGACATTACAAACCGCTCCGATCT
GTGTTCAGTGCCTTCTTATGGCCATGCCGCAATGCCGCAGACTGTTCCGA
TAGCGGACGCTCTCCGTGGTCACAAGAATTGCTGTTTCAAGGTTTCAACC
CGGGTCTCACTTGAGCATCGTCTACAAAGGATAACATGCCTCGAAGTATG
CATGAAGCAGGAAGCTTCGAAGTCTAGGTCTACCTCTGTACATACATCTG
CCATCGCACCTTTTGCTGTGTGCTGTACAAGCTTTGTTTGCGACGTGGAG
TAGTCAAGCAGTAGTCCAGGGAACGTCACGCTCACCATCACAAGTACCAG
GGTATGCAGCAGCAGTCTCCATCTGCGGTTTATCTGTGATCCCTCCTCTC
TCGCGCACAGCAGTAGTAAGCCATATAGCTCCCGTTGTCCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TTTTTCTCTCTTTGTGTGCGTCTATCAGGTAAACTCTATTTTCTAGATAC
AGCCTTGTTCACGCAAGAAACCCAAACTTTATTCAACACATGTTCCCGAA
CGTAATGAAACACCAATGACAACAGATATGGTACCAAACTGACCGCCGTC
AATAGAGAAAGACCGTGACGTTCTCGGAGTTTGTTTGAGGCACTACCGGT
GGCGCTAGGGGAGAAAATGTGTCATTTCACGGAATGACGTGGTATAACAC
CCCCCCCCCCAAGGTCAGGCTTTCCACACTAAGTGCTGTATGAAATCAAT
TCGGGATATACTCTTTTTTGTAACGCGTGTACGAAATCAATTCGAGATAT
ACTCTTATTTGTAACACGTATGGTCTCTCTGTGTCCTAAGGAGGACATTT
GCGGGTTTTTTTTTCGAAATTCCAAAAAAACTGACGCAGTTTAACTAATA
ATAGCATTCAAGTTCTGAACAAGGGCCAAATCCGCACTTTATCCAAGTAT
ATTTCGGGATTTGAGGGACCTTGACCACACTGAAGTGCGATTTCTCAATG
AAAGAATTGAAAAAAAACAAGTTGTAACACAGGTGGTATCAGTGGAACCC
AAGAAAGGTGCCCACTAGAAGGTTTTTCAAAATTCTTTAAATTGACGTAG
TTTGCCCAATAATAGCGTTAAAATACCCTAGTAACTTGGGTGTTTTTCGG
ACTTGACCACACTGAAATGCGTTTTCTCACGCGGTTTTTTTCGAGTTAGA
CCCTGAAACTTCGCACACATGTTCGTTGGGTCACTGCGAAAAATCACACG
ACCGGGGTGATTCGATTTTGTTTTCTTTCACCAGATTTCTGGGGTCCTAG
CCGCCCAATGCAGACAAAAAAACCTTTATACTAATATAACTGTTGAAAAA
AACGAATCGCCCCGGTCTTCCGATTTTCGCAGTGACCCAACGAACATGTG
TGCAAAGTTTCAGGGTCTAATTCGAAAAAATCGCGTGAGAAAACGATGTT
GAATACATTTGTATCTTCTTGCGTGAACCAGCCTGTACTATTTTCTTTGT
GGATGTGGTTCTGTTGAATCTATTGCCAAGCATCATGCAGTTACCGGCAC
AGCAGCCGTTATTAGGCATCAAACAGGCGTATTTTGTTGCCGAAGCAAGA
GTTTAGGGTCGCAACAACAGCTGCATCGAGTTGTCCTTCTCGAGAGGTTA
TCTTCCTGCTTCATGCTGATTGCTTATTTCCATTGGTCCAGTGTTTCAAA
TCTGAATACGGCACAGGCTGATGAAAGGAGGGACGCCAGCCACCGCGCTG
CCTCTGAATAAAAAAAAAAGCGACTGCTGTATCGTTTCGTGGATGCCTCT
ACTGCTGTCTGTTTTGTTTAGGGAGAGTCAATATTACAGTAGTGTTGGAG
GAACGTTTGTCCCGTGGGCAGGATGGTGTTGTGGTTTCTCGTCTGAATTC
AAACCGAGACCTCGCTCAACATTCGATTTGCGGTATTTCAGAAGTAATGG
CGAGAATTGAGGCGTAGGTGGGATCCCAGCCCCGCCGCGCCTGTATATCT
CAACCTCTGCCTCTTTCATGATGCGTATTTGGTGTCGAGTCGTGTTGATG
AACCAGGGTTACACTAAGGATCGACCTTTTTACTTGTGCTTCAGAGCGAT
CAAGCTGTGAATCCAAACGTTATTGAGCAACGAAGCGGGCATGAAGAAAA
ACATCCTGTTTGCCGTACCAAGTCCAGCAGGAATTTTAGCAGATACGATG
GGCATCATATGAAATCGTTGTGGATTGGACGATGTGCCCCGTATTGGACG
TTTTCAAGACATTCTTTCTAGCAAGACCAAAGCAAGCGCGTAATGAGCTG
TACCGCAGAGTGTGTAAAACTGGCCCCGGAGCAGCGAAAATGAATCAGGC
GCGGTGCTGGTGCATCAAAACAACGCATGACGAGATATGATACTTGGTGA
CGACGCCAAATACTGATGCAGGGGTTTTCGAAGTTGAGTTCCGGATTACC
TTGGTGCTTGCAGGAAGACCAGCTGTCGCCGTTCACCATCAACGCGAACG
AATGTACTGAACACTCGCTTGGATGATACTTACTACCCTACATGACGTGG
AAGTCAACAACACCAAGTCGGTCATGTCGTTGCTGCTCTCAACGATGGCA
ACCAACTTTTTTTCTTGCACGTGCCCGTTTTATGAGCCTTTGCATTCGCT
TCCCGCTTATTGGCGAGTAGCGCACGCAGTGCGGCAACATGCCCTTTTCT
TCCGAAACGTCTGTTCCTTATGTACCGTGGCATGCGATGACTACAGCATG
AGCATATTTATAACTCAAAGGCTTTATACCCCCCCTCCCTCCCCTCCATG
TCCCCCTTGTCGTCAGGTGCGAGGGTATGCATCGGACTGTCCGTTCCGGG
CATCATTTTCCTCATCGTGATTGGCATCTTGTTCGACAAGCAGGGATTTT
ACACCTCGGTAGACGTCGACGACCCGTCGGCGGCAGCGTCTGATTGTTAC
TTTGCAGGTGAGGATCGCACCCACCCCACAACTGTCCCTGTTGCGGGATA
TTTGATCTCACACGTCGAAGCCTCATATCATGACGCTACTGGACCGAAGG
AGTTGAAAAAAGCTGGAAAAAAGTAACACCTGTGTCAGTTTACGAAGAAT
CCTTCGAGATGCACTGTGAAGCATAGCTATCATTTTTGTACCATGTTGGT
ACGGAAAGACATACCAAGGAACATGCCACGACGAACATCCCAAAGCGAGA
AACCATTTATTGGAGCCACGGAAATGGGAATTCGCGACACAAGCATACCG
TAAGAACTTGAGTTATCGCCCAAATCGGCTATGTGATATTCCATGGACTC
GCACACAGACAAGCACGGAATCGAGTGCAGTGCACGCCGACTCTTCCTAC
AGTCGAGTGAGTTTTGAAGCGCGTGCGTCAAAAGTCGTTAAGTCGCTTGC
ACGCCGGCGACCCGCTCATCGTGGTTGCTCTTACCCCTCACCACGCGTGT
GGTCATTTCTTGTCCGTCCCTCTTACCCGCACGTTTCCATTTGTGTGGTG
CTTCCCTCGCACCTGCCCTCTCTGCCCGTGGCGTCACGTAACGTCAGCGT
TGCTCTACGTCGTCGCGATCGGGGTTTCGTTCGGGGGTATCTGGTACGAG
AAGAATGGGAGACAGATGATGGCGACGCGTCAGGTGGGAATAAGAAAGAG
GGAGACTAGACAGGTCCTCAACCGATTGATTTATCGATGCTTGCGCTGCT
CACTTGTCGTTGCGCGGTTGCTGCTGTCCGTATGGTACACACAAGAATGT
CGTGGTAGAGCTGTTGCTCTCCGTGCTCACTCGAAGCGACTCGGGGTCAG
GCTGGGACTCTCCTCTCACCGCCACGGTAATCAACCAGTGCGTTTCCTGA
TGAAGCGTTCTTGTGGCCTTCCATCGGTTCGATATATTGTGTTGATATCT
TCCCGTTCTTCTGTGATCGCCCCACATCTCCCTTCTTGCTTGACTTTTAC
ACAGGAGGAGGTCGTCCATGGGGACGAAAGCGCAGGGCTACTTGGACGGG
AAGACTCCGGCTACGGTTCACTATCATACCTTTCGCAGATGCCCTTAATG
CCGCAGGGGTACTCACGAAGTGACAACTACGTGGAAGGACAAGGTTAAAC
TCGGGCCAGCCCGCTGGGTGCTGGTAATATAAAAACACCCAGATTGTTTC
GGAGGATGATGAGCTCGTGGGGTTCTTTTCCAATTCTGTCTCATGTGTGC
CGCCTCGGCTTCGCGTTTTTTTCTTGCCTTCGGGTAATCGCCGCGATTTC
GCAGTGTCGTCAAAATGTGTTTTGTTGGGTAGGGGGGCGCAAGTCGCGCC
AGGAAAGGGTTTTAGGCTTTGTGGGAGGATGGCGAGGGTTTCCGATTTTC
TTGCGCCAGTCACCACAATTCGTTCGTTAACCGTGAGGTTTGGCTAGGCT
CTGGGTTGTGCAAGTTTCGTTGAATCATGCCGGATGGTCAAACTTTGGGA
CAAAATGATACGTACAGATTCCGGCCGGTTTTATATGCGATAGATCGTGG
TTGTCCAGAAAGCAAGCCCCGATGGACCCTGTCGGTTCTGTGCCGCTTTT
GCGGATTTCCCCGCGTACAAGTGGAAGTCTGTGGCTTGCCGTGTTTCGCG
TCTTGGGCGGGAGCTGGTTAAAAGAAGAGGGGAGGGGGGGGTGGTACGGC
CCGCAGCATCTGCTATTTTTGTTGGTCAAGTGATATGTCTGTGCGTGGGA
CCATCTTATTGGTCGTCCGATGTTGTGAAGCCTTATCATTCAGTATTATT
CAGCTTATGTTTCCCAACCGTCCACAGGTGCGGCGAGATTATCACTACTT
GTAGTTTAGGCAAGGTTTTTTGCATGAAGTTATGACGTCATCGCCTCCGT
GGCAGATTTGGTTGCCCCAGAGTAATGTGCTTGTGCTTCGGCTGACCGAC
GGTTGTGAAGTTTTTTTCGTTTCCTCATCTACGTGATGTTTGCCGAAACG
GCCGACGGCCGAACGCACGAAACATTTCGTTTCCACGGCAGCGTGATGAC
CCATTCTTTTGAAGCCATGCTGGCTTGTGAGGGCGTGTTGCTGTGGGGGA
GGGGGGGCGAGGTGGCGGTTGGTTGCGTTTTGGTTTCGCTGTCAGACTGA
TCGGAAGCGCGACATTTGTTTCGCTACAAGGTCTCCGCTGCTTGTTGAAA
CATATTCGTGTATAGGCCATGTCCCTACGTAGAGTCTTCTGACCCACGTC
TCCCTGGCCACTCTTATACACTATCATATATTCATCGCTGCTATTGTTCG
TAAGAACATTTTGTTGTCTATCGTCGCCCGAAAGCCGTGGCGGGGCGTCC
TCTACCGCTGAACGAATTAGTGGTGTGCTCGTCATGTTGCAGTTTCAATC
CTTGTAAAGATAATTTTTTTCTGTTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig145:414572..420447+

>mRNA_P-littoralis_Contig145.121.1 ID=mRNA_P-littoralis_Contig145.121.1|Name=mRNA_P-littoralis_Contig145.121.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig145:414572..420447+ (Pylaiella littoralis U1_48)
ATGGGGCGAATCGACTGCTGTGCGAGGGTATGCATCGGACTGTCCGTTCC
GGGCATCATTTTCCTCATCGTGATTGGCATCTTGTTCGACAAGCAGGGAT
TTTACACCTCGGTAGACGTCGACGACCCGTCGGCGGCAGCGTCTGATTGT
TACTTTGCAGCGTTGCTCTACGTCGTCGCGATCGGGGTTTCGTTCGGGGG
TATCTGGTACGAGAAGAATGGGAGACAGATGATGGCGACGCGTCAGGAGG
AGGTCGTCCATGGGGACGAAAGCGCAGGGCTACTTGGACGGGAAGACTCC
GGCTACGGTTCACTATCATACCTTTCGCAGATGCCCTTAATGCCGCAGGG
GTACTCACGAAGTGACAACTACGTGGAAGGACAAGGTTAA
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