mRNA_P-littoralis_Contig145.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.105.1
Unique NamemRNA_P-littoralis_Contig145.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig145.105.1 vs. uniprot
Match: A0A6H5L0L8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.550e-21
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   37 VIPTELAVDTEMGSG-DVEGSLCLAKSGGEMADRFGTFCQKSLCRESWDFVVDAVNYETVFR-DPEGQYQHFLYIVNQYMLPRSPDELNLSG 306
            V P+ L V+ E  S  DV+G   LA  GG+MADRFG F Q++LC ESWDF++DAV YE     +P+ Q+  FL ++NQY+LP SPDE+N+S 
Sbjct:  261 VKPSVLPVEDETSSNEDVDGVYALAVKGGDMADRFGRFVQENLCMESWDFILDAVKYEMESSCEPDDQFDEFLILLNQYLLPTSPDEVNISS 352
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BLAST of mRNA_P-littoralis_Contig145.105.1 vs. uniprot
Match: D8LQW8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW8_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 4.920e-21
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:   28 GVGVIPTELAVDTEMGSGDVEGSLCLAKSGGEMADRFGTFCQKSLCRESWDFVVDAVNYETVF-----RDPEG-QYQHFLYIVNQYMLPRSPDELNLSG 306
            G  V+P E     +  + D  G L LA  GGE+A +FG FCQ++LC ESWDF+VD V YE +       DPE  Q+  FL+I+NQY+LP SPDE+N+S 
Sbjct:   14 GATVVPVEEVFTVQ--ASDECGVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLIANDPEDEQFNSFLFILNQYLLPTSPDEINISS 110
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BLAST of mRNA_P-littoralis_Contig145.105.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.370e-20
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   37 VIPTELAVDTEMGSGDVEGSLCLAKSGGEMADRFGTFCQKSLCRESWDFVVDAVNYET-----VFRDPEG-QYQHFLYIVNQYMLPRSPDELNLSG 306
            V+P E     +  + D  G L LA  GGE+A +FG FCQ++LC ESWDF+VD V YE      V  DPE  Q+  FL+I+NQY+LP SPDE+N+S 
Sbjct:   80 VVPVEEVFTVQ--ASDECGVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLVANDPEDEQFNSFLFILNQYLLPTSPDEINISS 173
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BLAST of mRNA_P-littoralis_Contig145.105.1 vs. uniprot
Match: A0A6H5K5R8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.580e-20
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:   82 DVEGSLCLAKSGGEMADRFGTFCQKSLCRESWDFVVDAVNYET-----VFRDPEG-QYQHFLYIVNQYMLPRSPDELNLSG 306
            DV+G + LA SGGEMA++FG FC+++LC ESWDF+VD V YE      + R+PE  Q+  FL+I+N Y+LP SPDE+N+S 
Sbjct:  193 DVDGVVGLASSGGEMAEQFGKFCRENLCMESWDFLVDVVRYERMAPSPIARNPEDEQFNCFLHILNHYLLPTSPDEINISS 273
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BLAST of mRNA_P-littoralis_Contig145.105.1 vs. uniprot
Match: A0A6H5JLH7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.370e-15
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:   37 VIPTE----LAVDTEMGSGDVEGSLCLAKSGGEMADRFGTFCQKSLCRESWDFVVDAVNYETVFRDPEGQYQHFLYIVNQYMLPRSPDELNLSG 306
            V+PTE     A +   G    +G L  A+ GG +A  F  +C +SLC ESWDF+V A  YE +  DPE QY+ FL I  +Y+ P SP E+N+S 
Sbjct:  170 VVPTEGWAVSASNRSSGPTHGDGVLGYAQEGGSVASMFEQYCMRSLCAESWDFIVAACKYEEI-SDPEEQYKMFLRITEEYLRPTSPQEVNISS 262
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BLAST of mRNA_P-littoralis_Contig145.105.1 vs. uniprot
Match: A0A6H5KD71_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD71_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.900e-14
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:   37 VIPTE----LAVDTEMGSGDVEGSLCLAKSGGEMADRFGTFCQKSLCRESWDFVVDAVNYETVFRDPEGQYQHFLYIVNQYMLPRSPDELNLSG 306
            V+PTE     A     G    +G L  A+ GG +A  F  FC +SLC ESWDF+V A  YE +  DPE QY+ FL I  +Y+ P SP E+N+  
Sbjct:  132 VVPTEGWAVSASTRSSGPTHGDGVLGYAQEGGSVASMFKHFCTRSLCAESWDFIVAACKYEEI-SDPEEQYEMFLRITEEYLQPTSPQEVNIGS 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L0L8_9PHAE2.550e-2152.17RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQW8_ECTSI4.920e-2148.48RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQX1_ECTSI2.370e-2050.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5R8_9PHAE3.580e-2054.32RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLH7_9PHAE8.370e-1543.62RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KD71_9PHAE2.900e-1443.62RGS domain-containing protein n=3 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:329285..329990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTR6
Model size313
Max annot lvl2880.D8LTR6|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000996
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
DescriptionRegulator of G protein signaling domain
Cds size309
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789683.1594152-CDS-P-littoralis_Contig145:329284..3294941680789683.1594152-CDS-P-littoralis_Contig145:329284..329494Pylaiella littoralis U1_48CDSP-littoralis_Contig145 329285..329494 +
1680789683.1713147-CDS-P-littoralis_Contig145:329889..3299881680789683.1713147-CDS-P-littoralis_Contig145:329889..329988Pylaiella littoralis U1_48CDSP-littoralis_Contig145 329890..329988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.105.1prot_P-littoralis_Contig145.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 329285..329988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.105.1

>prot_P-littoralis_Contig145.105.1 ID=prot_P-littoralis_Contig145.105.1|Name=mRNA_P-littoralis_Contig145.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
RHLTSRGLGGVGVIPTELAVDTEMGSGDVEGSLCLAKSGGEMADRFGTFC
QKSLCRESWDFVVDAVNYETVFRDPEGQYQHFLYIVNQYMLPRSPDELNL
SGD
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mRNA from alignment at P-littoralis_Contig145:329285..329990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.105.1 ID=mRNA_P-littoralis_Contig145.105.1|Name=mRNA_P-littoralis_Contig145.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=706bp|location=Sequence derived from alignment at P-littoralis_Contig145:329285..329990+ (Pylaiella littoralis U1_48)
CGCCATCTTACGTCCCGTGGGCTGGGCGGGGTCGGGGTCATTCCGACGGA
GCTTGCGGTTGACACCGAAATGGGTTCTGGTGATGTGGAGGGCTCATTGT
GCCTTGCGAAAAGTGGTGGAGAGATGGCCGACCGCTTCGGGACGTTCTGC
CAGAAAAGCCTGTGCAGGGAAAGCTGGGACTTTGTTGTTGATGCCGTCAA
CTACGAAACGGTCAGTTTTGTCAGACAGGCTGGATCTTGCTTCAAAATGT
TGGTCACGATCGCCCATGATTTGTAATGCCCGCGGGGGGTCACGTAAACG
ATGACAAATGTGATGACCTACCCACCGACGAAGGCGCGACTGCTGCGAGC
AAGACACGCGCCGAAAAATGTAACCACAACCCACATCCACCACCTGCGAT
ATTGAAGAGTGCGTCAAAGAAAGGACACGCGTTGGTTACCGGCAGGGAGT
ATGATAGTCGGTACGTTTAGCGTGGAGCCATCATTGTCAGATTCGGACCG
AACGAACGTAACGAACGCGAAGCACGACGTCAAGTCCTGGCTTGCATTGA
ACGTCGCCCTGTTTCTACTGTGCTACACCTTGATTGACTCGTTTGGTTGA
TTCAGGTCTTTCGTGATCCGGAAGGGCAGTATCAGCACTTCCTGTACATC
GTGAATCAGTATATGTTGCCCAGGTCCCCCGACGAGCTTAACCTCTCTGG
TGATAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig145:329285..329990+

>mRNA_P-littoralis_Contig145.105.1 ID=mRNA_P-littoralis_Contig145.105.1|Name=mRNA_P-littoralis_Contig145.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig145:329285..329990+ (Pylaiella littoralis U1_48)
CGCCATCTTACGTCCCGTGGGCTGGGCGGGGTCGGGGTCATTCCGACGGA
GCTTGCGGTTGACACCGAAATGGGTTCTGGTGATGTGGAGGGCTCATTGT
GCCTTGCGAAAAGTGGTGGAGAGATGGCCGACCGCTTCGGGACGTTCTGC
CAGAAAAGCCTGTGCAGGGAAAGCTGGGACTTTGTTGTTGATGCCGTCAA
CTACGAAACGGTCTTTCGTGATCCGGAAGGGCAGTATCAGCACTTCCTGT
ACATCGTGAATCAGTATATGTTGCCCAGGTCCCCCGACGAGCTTAACCTC
TCTGGTGAT
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