mRNA_P-littoralis_Contig145.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.19.1
Unique NamemRNA_P-littoralis_Contig145.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig145.19.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 5.040e-65
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 1
Query:    1 PDQEWDFIVQHNHSPSSAGAIERDPILKYMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENKIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPP 330
            PDQEWDFIVQHNHSPSSAGAIERDPIL+ MVGEVDARNDPVNGAGLLFPTLAWYEFVFH EN IYHFLR+PYFLG YLGDL AEILRVVTESSEVR+AWAKCCP+AV PP
Sbjct:  164 PDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAPP 273          
BLAST of mRNA_P-littoralis_Contig145.19.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.290e-37
Identity = 73/108 (67.59%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    7 QEWDFIVQHNHSPSSAGAIERDPILKYMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENKIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPP 330
            +EWDFIVQHNHSPSSAGAIERDPILK MVGEVDARNDP  GAGLLFPTLAWY                         DLPAEILRV+TESSEVR+AW KCCP+AV  P
Sbjct:  181 KEWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPAAGAGLLFPTLAWY----------------------LSRDLPAEILRVITESSEVRRAWGKCCPSAVAHP 266          
BLAST of mRNA_P-littoralis_Contig145.19.1 vs. uniprot
Match: A0A6H5JA88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA88_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 6.180e-35
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    4 DQEWDFIVQHNHSPSSAGAIERDPILKYMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENKIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPAAVDPP 330
            D EW + +  +HS SSA AIE D  L  +V  VD R D  NGAGLLF +L +Y FV   EN  YH L  PY+LG YLGDLPA  LRVV+ES EV+ AWAKCCPAAV+PP
Sbjct:  136 DMEWGWFIPRHHSKSSAAAIETDAHLSNLVAGVDKRIDLKNGAGLLFVSLDFYNFVLMLENGYYHVLHQPYYLGPYLGDLPAGPLRVVSESEEVKDAWAKCCPAAVEPP 244          
BLAST of mRNA_P-littoralis_Contig145.19.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.630e-28
Identity = 52/103 (50.49%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    4 DQEWDFIVQHNHSPSSAGAIERDPILKYMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENKIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCP 312
            ++EW   V  N S S   A+E+D  L+++VGEV  RND +NGAGLLF T A++EF + +E   +H L  P+ LGAYL  LP ++LRVV+E++E+R AWA+CCP
Sbjct:  168 EREWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCP 270          
BLAST of mRNA_P-littoralis_Contig145.19.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.710e-28
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    4 DQEWDFIVQHNHSPSSAGAIERDPILKYMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENKIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCP 312
            ++EW   V  N S S+  A+E+D  L+++VGEV  R+D +NGAGLLF T  ++EF +  E   +H L  P+ LGAYLGDLP E LRVV E++ VR AWA+CCP
Sbjct:  226 EREWVSFVDLNKSASAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCP 328          
BLAST of mRNA_P-littoralis_Contig145.19.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.260e-26
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    7 QEWDFIVQHNHSPSSAGAIERDPILKYMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENKIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA---AVDP 327
            Q+W  +VQHN   SS  AI  + +L+  V  VD +ND  NG GLL+PT+ W EFV+  E  I+HFL+NP FL A LG LPAEI +VV+E+  V++ W  CCP    A+DP
Sbjct:  208 QDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYPTMDWVEFVYAVERGIFHFLKNPIFLAACLGGLPAEIFKVVSEAEVVKEMWGNCCPPGPPAIDP 317          
BLAST of mRNA_P-littoralis_Contig145.19.1 vs. uniprot
Match: A0A6H5KKY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.460e-21
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   13 WDFIVQHNHSPSSAGAIERDPILKYMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENKIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA---AVDP 327
            W     HN S SS   +           +VD++ND  NG+GLL+PT+ W EF +  E  I+HFL+ P FL A LGDLPAEI++VV+E+  V++ W  CCP    A+DP
Sbjct:   49 WTHQRSHNLSVSSNTTL---------AAKVDSKNDMKNGSGLLYPTVEWVEFKYAVERGIFHFLKKPIFLAACLGDLPAEIVKVVSEAEVVKEMWGNCCPPGPPAIDP 147          
BLAST of mRNA_P-littoralis_Contig145.19.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.190e-17
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   10 EWDFIVQHNHSPSSAGAIERDPILKYMVGEVDARNDPVNGAGLLFPTLAWYEFVFHAENKIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA 315
            EW +IV  +  PS   A   +  L+ +  EV  RNDP    GL+F T  + + +   E+  +H L  P FLG+YLG+LP EILR+V+ES  V++AW  CC A
Sbjct:  237 EWMWIVDRHKYPSKRAAEGNEMELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQA 338          
BLAST of mRNA_P-littoralis_Contig145.19.1 vs. uniprot
Match: A0A6H5K3B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.070e-10
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query:  169 VFHAENKIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWAKCCPA---AVDP 327
            V+  E  I+HFL NP FL A LG+LPAEI +VV+ES  V++ W  CCP    A+DP
Sbjct:   44 VYVVERGIFHFLENPIFLAACLGELPAEIFKVVSESEVVKEMWGNCCPPGPPAIDP 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KW14_9PHAE5.040e-6590.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K2_9PHAE2.290e-3767.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA88_9PHAE6.180e-3559.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R0_ECTSI1.630e-2850.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVM7_ECTSI5.710e-2851.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K201_9PHAE4.260e-2650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKY9_9PHAE2.460e-2144.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M3_9PHAE4.190e-1742.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3B5_9PHAE6.070e-1053.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:30585..30926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size342
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789681.1243792-CDS-P-littoralis_Contig145:30584..309261680789681.1243792-CDS-P-littoralis_Contig145:30584..30926Pylaiella littoralis U1_48CDSP-littoralis_Contig145 30585..30926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.19.1prot_P-littoralis_Contig145.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 30585..30926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.19.1

>prot_P-littoralis_Contig145.19.1 ID=prot_P-littoralis_Contig145.19.1|Name=mRNA_P-littoralis_Contig145.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
PDQEWDFIVQHNHSPSSAGAIERDPILKYMVGEVDARNDPVNGAGLLFPT
LAWYEFVFHAENKIYHFLRNPYFLGAYLGDLPAEILRVVTESSEVRKAWA
KCCPAAVDPPCSKS
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mRNA from alignment at P-littoralis_Contig145:30585..30926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.19.1 ID=mRNA_P-littoralis_Contig145.19.1|Name=mRNA_P-littoralis_Contig145.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig145:30585..30926+ (Pylaiella littoralis U1_48)
CCCGACCAGGAGTGGGACTTCATTGTGCAGCACAATCATTCCCCCTCCAG TGCGGGCGCCATTGAGAGAGATCCAATCCTAAAATATATGGTTGGGGAGG TCGACGCGAGGAATGATCCCGTTAACGGTGCGGGTCTCCTTTTTCCTACT CTGGCGTGGTATGAATTCGTATTCCACGCCGAGAACAAGATATACCATTT TCTGCGTAACCCATACTTTCTAGGTGCTTATCTAGGGGACTTACCGGCTG AGATCCTGAGGGTAGTGACAGAGTCGTCAGAGGTACGGAAGGCATGGGCT AAATGCTGCCCTGCCGCCGTTGACCCCCCCTGTTCGAAGAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig145:30585..30926+

>mRNA_P-littoralis_Contig145.19.1 ID=mRNA_P-littoralis_Contig145.19.1|Name=mRNA_P-littoralis_Contig145.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig145:30585..30926+ (Pylaiella littoralis U1_48)
CCCGACCAGGAGTGGGACTTCATTGTGCAGCACAATCATTCCCCCTCCAG
TGCGGGCGCCATTGAGAGAGATCCAATCCTAAAATATATGGTTGGGGAGG
TCGACGCGAGGAATGATCCCGTTAACGGTGCGGGTCTCCTTTTTCCTACT
CTGGCGTGGTATGAATTCGTATTCCACGCCGAGAACAAGATATACCATTT
TCTGCGTAACCCATACTTTCTAGGTGCTTATCTAGGGGACTTACCGGCTG
AGATCCTGAGGGTAGTGACAGAGTCGTCAGAGGTACGGAAGGCATGGGCT
AAATGCTGCCCTGCCGCCGTTGACCCCCCCTGTTCGAAGAGC
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