mRNA_P-littoralis_Contig145.138.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.138.1
Unique NamemRNA_P-littoralis_Contig145.138.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:493977..494450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size475
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789680.982138-UTR-P-littoralis_Contig145:493976..4940091680789680.982138-UTR-P-littoralis_Contig145:493976..494009Pylaiella littoralis U1_48UTRP-littoralis_Contig145 493977..494009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789680.9938512-CDS-P-littoralis_Contig145:494009..4944501680789680.9938512-CDS-P-littoralis_Contig145:494009..494450Pylaiella littoralis U1_48CDSP-littoralis_Contig145 494010..494450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.138.1prot_P-littoralis_Contig145.138.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 494010..494450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.138.1

>prot_P-littoralis_Contig145.138.1 ID=prot_P-littoralis_Contig145.138.1|Name=mRNA_P-littoralis_Contig145.138.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
KLALPGSACSRAAHVRGEGTTPRATSVASESRGHHRRRSYSSRAPNKSSG
LVSASNSAIRITAGSEMLVRLRTRPEEPVVGAGESPAGDLPVAAEVAERP
VVGAEPRAPHTEGGRRARLRPWWYALEPTRGAGSIARLGQLREGFM*
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mRNA from alignment at P-littoralis_Contig145:493977..494450-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.138.1 ID=mRNA_P-littoralis_Contig145.138.1|Name=mRNA_P-littoralis_Contig145.138.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=474bp|location=Sequence derived from alignment at P-littoralis_Contig145:493977..494450- (Pylaiella littoralis U1_48)
AAACTGGCGCTACCTGGTTCCGCATGTTCGCGGGCAGCGCACGTGCGGGG
GGAGGGAACGACGCCGCGGGCGACATCAGTCGCAAGCGAAAGCCGTGGGC
ACCACCGTCGCCGCAGCTACAGCAGCAGGGCACCAAACAAATCAAGCGGG
CTGGTGTCTGCTTCAAATTCCGCGATACGGATTACTGCAGGTTCGGAGAT
GCTTGTACGTTTGCGCACCCGACCGGAGGAGCCGGTGGTGGGGGCGGGGG
AGAGCCCGGCGGGGGACCTGCCAGTGGCGGCGGAGGTGGCGGAGCGGCCG
GTGGTGGGGGCGGAGCCTCGGGCGCCTCACACGGAGGGGGGGCGGCGGGC
GCGTCTTCGGCCGTGGTGGTACGCTCTAGAACCAACTAGGGGTGCGGGCT
CCATTGCACGGTTGGGCCAACTCCGGGAAGGTTTCATGTAGTGGGTCGCG
GTTTGAAAGGGCTCGCTGCGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig145:493977..494450-

>mRNA_P-littoralis_Contig145.138.1 ID=mRNA_P-littoralis_Contig145.138.1|Name=mRNA_P-littoralis_Contig145.138.1|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig145:493977..494450- (Pylaiella littoralis U1_48)
AAACTGGCGCTACCTGGTTCCGCATGTTCGCGGGCAGCGCACGTGCGGGG
GGAGGGAACGACGCCGCGGGCGACATCAGTCGCAAGCGAAAGCCGTGGGC
ACCACCGTCGCCGCAGCTACAGCAGCAGGGCACCAAACAAATCAAGCGGG
CTGGTGTCTGCTTCAAATTCCGCGATACGGATTACTGCAGGTTCGGAGAT
GCTTGTACGTTTGCGCACCCGACCGGAGGAGCCGGTGGTGGGGGCGGGGG
AGAGCCCGGCGGGGGACCTGCCAGTGGCGGCGGAGGTGGCGGAGCGGCCG
GTGGTGGGGGCGGAGCCTCGGGCGCCTCACACGGAGGGGGGGCGGCGGGC
GCGTCTTCGGCCGTGGTGGTACGCTCTAGAACCAACTAGGGGTGCGGGCT
CCATTGCACGGTTGGGCCAACTCCGGGAAGGTTTCATGTAG
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