mRNA_P-littoralis_Contig145.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.30.1
Unique NamemRNA_P-littoralis_Contig145.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:68362..68823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size462
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789680.8050861-UTR-P-littoralis_Contig145:68361..684281680789680.8050861-UTR-P-littoralis_Contig145:68361..68428Pylaiella littoralis U1_48UTRP-littoralis_Contig145 68362..68428 +
1680789680.823735-UTR-P-littoralis_Contig145:68755..688231680789680.823735-UTR-P-littoralis_Contig145:68755..68823Pylaiella littoralis U1_48UTRP-littoralis_Contig145 68756..68823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789680.8151152-CDS-P-littoralis_Contig145:68428..687551680789680.8151152-CDS-P-littoralis_Contig145:68428..68755Pylaiella littoralis U1_48CDSP-littoralis_Contig145 68429..68755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.30.1prot_P-littoralis_Contig145.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 68429..68755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.30.1

>prot_P-littoralis_Contig145.30.1 ID=prot_P-littoralis_Contig145.30.1|Name=mRNA_P-littoralis_Contig145.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MDSCLSREVCVEGGQQNNSSSSSSRHSTTGEYRIRGGFRRQKSGREFLIL
SKPVYPVYCVPLKRLLLIFWSTTWLICRCALRAKIHFSLGWRLRCAWLCT
LLQRNIFD*
back to top

mRNA from alignment at P-littoralis_Contig145:68362..68823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.30.1 ID=mRNA_P-littoralis_Contig145.30.1|Name=mRNA_P-littoralis_Contig145.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig145:68362..68823+ (Pylaiella littoralis U1_48)
CATATTGCAACACGGAACATAAACAGATTGGAGTACCGCCGCTTCAAAGT
CAACCATATGGGTCGAAATGGATTCGTGTTTGTCAAGGGAGGTGTGCGTA
GAGGGAGGACAACAAAACAACAGCAGCAGCAGTAGCAGTAGACACAGCAC
CACCGGGGAATACAGGATACGGGGGGGCTTTCGAAGACAGAAGAGTGGCC
GGGAGTTCCTTATTTTATCCAAGCCAGTGTATCCAGTATATTGCGTTCCC
TTGAAACGGCTCCTGCTTATTTTTTGGTCGACGACGTGGCTGATTTGCCG
TTGCGCCCTGAGAGCGAAAATACACTTTTCACTCGGCTGGAGACTGCGTT
GTGCTTGGCTGTGCACCCTTTTACAAAGAAATATTTTCGACTAACGAAAA
ACAAATACACGCTACCCGGCTAGACTTCAGAAAGGGAGACCAACACAACA
CTTGCAATGCAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig145:68362..68823+

>mRNA_P-littoralis_Contig145.30.1 ID=mRNA_P-littoralis_Contig145.30.1|Name=mRNA_P-littoralis_Contig145.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig145:68362..68823+ (Pylaiella littoralis U1_48)
ATGGATTCGTGTTTGTCAAGGGAGGTGTGCGTAGAGGGAGGACAACAAAA
CAACAGCAGCAGCAGTAGCAGTAGACACAGCACCACCGGGGAATACAGGA
TACGGGGGGGCTTTCGAAGACAGAAGAGTGGCCGGGAGTTCCTTATTTTA
TCCAAGCCAGTGTATCCAGTATATTGCGTTCCCTTGAAACGGCTCCTGCT
TATTTTTTGGTCGACGACGTGGCTGATTTGCCGTTGCGCCCTGAGAGCGA
AAATACACTTTTCACTCGGCTGGAGACTGCGTTGTGCTTGGCTGTGCACC
CTTTTACAAAGAAATATTTTCGACTAA
back to top