mRNA_P-littoralis_Contig1447.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1447.4.1
Unique NamemRNA_P-littoralis_Contig1447.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1447.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1447contigP-littoralis_Contig1447:6823..8285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size350
Hectar predicted targeting categoryother localisation
Exons3
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789680.6062644-CDS-P-littoralis_Contig1447:6822..68781680789680.6062644-CDS-P-littoralis_Contig1447:6822..6878Pylaiella littoralis U1_48CDSP-littoralis_Contig1447 6823..6878 -
1680789680.615393-CDS-P-littoralis_Contig1447:7244..73571680789680.615393-CDS-P-littoralis_Contig1447:7244..7357Pylaiella littoralis U1_48CDSP-littoralis_Contig1447 7245..7357 -
1680789680.6257458-CDS-P-littoralis_Contig1447:8106..82851680789680.6257458-CDS-P-littoralis_Contig1447:8106..8285Pylaiella littoralis U1_48CDSP-littoralis_Contig1447 8107..8285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1447.4.1prot_P-littoralis_Contig1447.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1447 6823..8285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1447.4.1

>prot_P-littoralis_Contig1447.4.1 ID=prot_P-littoralis_Contig1447.4.1|Name=mRNA_P-littoralis_Contig1447.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
GCLDLRQSPVESNVQPWFLSAAKRYGGVGAAAIITTQTFSLDVAAAAATT
LLITILLHHCRCNEDSRTNRRNRGSASACAGVAALRPHSRTSRPCKIGKG
HPWRSTLCLKSMKGV*
back to top

mRNA from alignment at P-littoralis_Contig1447:6823..8285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1447.4.1 ID=mRNA_P-littoralis_Contig1447.4.1|Name=mRNA_P-littoralis_Contig1447.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1463bp|location=Sequence derived from alignment at P-littoralis_Contig1447:6823..8285- (Pylaiella littoralis U1_48)
GGCTGCCTGGACCTTCGTCAGTCACCCGTCGAGAGCAATGTTCAACCTTG
GTTTCTATCCGCTGCCAAAAGATACGGGGGAGTAGGAGCAGCAGCAATAA
TAACAACGCAGACCTTCAGCCTGGATGTCGCTGCCGCTGCCGCCACTACG
CTTCTGATCACAATACTGCTGCATCATTGGTGAGATGAGAGCGGGTGGGG
AGACAGGATGCTCACGAAAGCTCTGCTTGGATATATGGTTGCCTTCTTTG
TGCGTCGTTCAATGCAACAAGTGCGTACACGTATCGTATCGTACAAGACT
TGTAACTTGATTTACTTCTACTGCTGTACTCTATTGTACTTTTCTCTGAA
TGTCTTGAAATGCTCCGTCTATGAAACAACCTCAACAGCAGGAGCAACAG
CAGCAACAGCAGCAGTGCCAACTGCTGCAGTGTCCCCACCACATCTGCAC
ATATCGCAACAACGGCAGCACTGTATCCATCACATGAGTACATGCAGGTA
GTGTGTGTATCAGTGTGTTCACATGACACTCCATCCCTTCCGGACGCCGG
TCTACACCTTTCGGCACGGAGTATGTGTGTGGGCTCATCATCAGCCGTGG
GCACACAGATCGTCATCCCAGATGTTTCTTGCTCCCCCTTCCTCGCCCGG
GACTTGCCTTTATTTTTACCTCGAGAAGAGTTCGGCCGTCCCCTCGTCTC
GTCAACTTTCGAACCGAATTGTGCAGTCGTTCGCATGCATGATGTGCGAA
AAAAAACAGCACTTGGACACTTGTGCAATGCTGCTGTACTGCTTGTACAG
ACTTTGAAGTAGCATCGAACGGTGCTCTCGGTGAGGTCAAACTAACTCGG
TCCGTAAACTATCGCTGTATTTTTTGTGTTGTTATTTGACCGCACTTGTT
TTGGGTTGCTCAATCAACACCACACCAGCAGATGCAACGAGGACAGCAGA
ACGAACAGGAGGAACAGGGGCTCAGCCAGCGCTTGTGCAGGCGTGGCAGC
CTTGAGGCCTCACTCCCGCACGAGTCGTCCCTGTAAAATCGGTGGGTACA
TCACAAGCGCACTCACGCACACATTCCACGCACACTGACTGAACGCACAC
GCGGGTGAGTGTGAGGGGTGAGGAGCTCATTCGTTGACATCCACCTCGCC
TCGAAACCAACCTCGTGTCGAATGTATTGCCTGGTTTGTTTTCCGAAGTT
GACGACCTAAGCACAACCTGGAGCTGAAACGCTGCTGGGCGTTCATTTAC
CGTGTAGACTATTGTGGAGACAGAAATAGAACACAAGTTTGAACAAGCTC
CAGCTGCAGCCCCATGATGTGTCAACTGCAAAAACGAAAAAAAAAGATGA
GACTGACGATAACCTGAGACGCTCCTGTTGGCCCCGCTCACTTCGCGTCA
AACCCAGGAAAAGGGCACCCCTGGAGATCGACCTTGTGCCTGAAGTCTAT
GAAGGGGGTCTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1447:6823..8285-

>mRNA_P-littoralis_Contig1447.4.1 ID=mRNA_P-littoralis_Contig1447.4.1|Name=mRNA_P-littoralis_Contig1447.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig1447:6823..8285- (Pylaiella littoralis U1_48)
GGCTGCCTGGACCTTCGTCAGTCACCCGTCGAGAGCAATGTTCAACCTTG
GTTTCTATCCGCTGCCAAAAGATACGGGGGAGTAGGAGCAGCAGCAATAA
TAACAACGCAGACCTTCAGCCTGGATGTCGCTGCCGCTGCCGCCACTACG
CTTCTGATCACAATACTGCTGCATCATTGCAGATGCAACGAGGACAGCAG
AACGAACAGGAGGAACAGGGGCTCAGCCAGCGCTTGTGCAGGCGTGGCAG
CCTTGAGGCCTCACTCCCGCACGAGTCGTCCCTGTAAAATCGGAAAAGGG
CACCCCTGGAGATCGACCTTGTGCCTGAAGTCTATGAAGGGGGTCTGA
back to top