mRNA_P-littoralis_Contig1446.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1446.8.1
Unique NamemRNA_P-littoralis_Contig1446.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1446.8.1 vs. uniprot
Match: A0A6H5JV12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV12_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.290e-18
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 LPDKTLHNHRACIEAAGPRIKSGCSSVGKLPEGSTVEGLYQSRMQELAESVVDLGKSSSVDFTW 192
            LPD TLH HR CIE+   RIK+ C     LP+G T +GLY SRM+ELAESVV+L +S+ V F W
Sbjct:  106 LPDATLHQHRHCIESCNARIKNACMHTSSLPDGMTADGLYNSRMEELAESVVELSRSTPVPFGW 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1446.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JV12_9PHAE1.290e-1857.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1446contigP-littoralis_Contig1446:16509..17035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size284
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789680.5672934-CDS-P-littoralis_Contig1446:16508..165901680789680.5672934-CDS-P-littoralis_Contig1446:16508..16590Pylaiella littoralis U1_48CDSP-littoralis_Contig1446 16509..16590 +
1680789680.5760524-CDS-P-littoralis_Contig1446:16833..170331680789680.5760524-CDS-P-littoralis_Contig1446:16833..17033Pylaiella littoralis U1_48CDSP-littoralis_Contig1446 16834..17033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1446.8.1prot_P-littoralis_Contig1446.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1446 16509..17033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1446.8.1

>prot_P-littoralis_Contig1446.8.1 ID=prot_P-littoralis_Contig1446.8.1|Name=mRNA_P-littoralis_Contig1446.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
LPDKTLHNHRACIEAAGPRIKSGCSSVGKLPEGSTVEGLYQSRMQELAES
VVDLGKSSSVDFTWDIRLYGDQGVVPAGSGEGPGSGGGPGSGEG
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mRNA from alignment at P-littoralis_Contig1446:16509..17035+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1446.8.1 ID=mRNA_P-littoralis_Contig1446.8.1|Name=mRNA_P-littoralis_Contig1446.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=527bp|location=Sequence derived from alignment at P-littoralis_Contig1446:16509..17035+ (Pylaiella littoralis U1_48)
CTGCCCGACAAGACTCTCCACAACCACCGCGCTTGCATCGAGGCGGCCGG
ACCACGGATCAAAAGTGGCTGCTCCAGCGTTGGTGAGTGGCACAAAAGGC
TGCAATTTCTTATACATCTGCCCTGAGCACTATTGGGCGCACGCATCTAC
TATCTACCTTCAGCAAACACGTACAGCGAATGAGCAACACATGAGGGATG
CCGTGTCGAACTAAACCTTAATCGTGAGAAAATTGTGCACCCTTGACCCC
CCCCCCCTACTTCTTCCCTCCCTCACCCGTGTACCTTTTTCTTTCCATGC
ATCGATTATACCCTTTACTCGCCAGGTAAGCTGCCTGAGGGGTCGACAGT
GGAAGGACTTTACCAAAGCAGGATGCAGGAGCTTGCGGAGAGCGTTGTCG
ACCTTGGCAAATCCTCGAGTGTCGACTTTACCTGGGACATCCGACTGTAT
GGTGATCAAGGAGTCGTGCCGGCTGGATCGGGGGAAGGGCCTGGATCAGG
CGGAGGGCCTGGATCAGGCGAAGGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1446:16509..17035+

>mRNA_P-littoralis_Contig1446.8.1 ID=mRNA_P-littoralis_Contig1446.8.1|Name=mRNA_P-littoralis_Contig1446.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig1446:16509..17035+ (Pylaiella littoralis U1_48)
CTGCCCGACAAGACTCTCCACAACCACCGCGCTTGCATCGAGGCGGCCGG
ACCACGGATCAAAAGTGGCTGCTCCAGCGTTGGTAAGCTGCCTGAGGGGT
CGACAGTGGAAGGACTTTACCAAAGCAGGATGCAGGAGCTTGCGGAGAGC
GTTGTCGACCTTGGCAAATCCTCGAGTGTCGACTTTACCTGGGACATCCG
ACTGTATGGTGATCAAGGAGTCGTGCCGGCTGGATCGGGGGAAGGGCCTG
GATCAGGCGGAGGGCCTGGATCAGGCGAAGGG
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