mRNA_P-littoralis_Contig1441.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1441.1.1
Unique NamemRNA_P-littoralis_Contig1441.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Match: D7FQ12_ECTSI (Alkaline phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ12_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 1.470e-99
Identity = 152/173 (87.86%), Postives = 160/173 (92.49%), Query Frame = 2 
Query:  131 FQDGVAYQAAVQYAMDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSSTPNFASDGSTYTVLSVGNGPGSILYEGSEEAAGPNLGEMSEDGIFMRPNVTNAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYDVMWYAMTHG 649
            FQDGVAYQ AVQYAMDNTDPA+TL+ISTADHGHAIAYNGYCGRGS VTGLCMEIDP  TMH   PN+ASDGSTYTV+SVGNGPGSILYEG EE  GPNLGE+SEDG+FMRPNVTN EA DPDY+QQSLVP+SSETHSGADVAVYAQGPWSHLM GTVEQTHIYDVMWYAMTHG
Sbjct:  339 FQDGVAYQDAVQYAMDNTDPAETLIISTADHGHAIAYNGYCGRGSSVTGLCMEIDPTATMHMDVPNYASDGSTYTVVSVGNGPGSILYEGDEEEVGPNLGELSEDGVFMRPNVTNDEATDPDYVQQSLVPLSSETHSGADVAVYAQGPWSHLMAGTVEQTHIYDVMWYAMTHG 511
[Close]
BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Match: A0A5C4MTH0_9RHOB (Alkaline phosphatase n=1 Tax=Rubellimicrobium rubrum TaxID=2585369 RepID=A0A5C4MTH0_9RHOB)

HSP 1 Score: 194 bits (494), Expect = 1.090e-49
Identity = 96/173 (55.49%), Postives = 121/173 (69.94%), Query Frame = 2 
Query:  137 DGVAYQAAVQYAMDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSSTPNFASDGSTYTVLSVGNGPGSILYEGSEEAAGPNLGEMSEDGIFM--RPNVTNAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYDVMWYAMTHG 649
            DGVA+  AVQ AMD TDPA+TL+I TADHGHAIA NGYCGRG+P+TGLCM++DP    H+  P  A+DG  ++V+   NG GS++ E               DG F   RPNVT  +A DPDY+QQ+L+PM SETHSGADVA +A+GPW+HL+ G +EQ  I+ VM +AMT G
Sbjct:  337 DGVAFAEAVQTAMDLTDPAETLIIVTADHGHAIALNGYCGRGTPITGLCMDVDPAGEEHTGEPVLANDGKPFSVVGYLNGAGSVMIE-------------QADGSFFGTRPNVTQEQATDPDYLQQALIPMGSETHSGADVAAFARGPWAHLVGGVIEQNVIFHVMLHAMTGG 496
[Close]
BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Match: UPI001B8B2595 (alkaline phosphatase n=1 Tax=Loktanella sp. SALINAS62 TaxID=2706124 RepID=UPI001B8B2595)

HSP 1 Score: 190 bits (482), Expect = 6.230e-49
Identity = 99/171 (57.89%), Postives = 118/171 (69.01%), Query Frame = 2 
Query:  137 DGVAYQAAVQYAMDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSSTPNFASDGSTYTVLSVGNGPGSILYEGSEEAAGPNLGEMSEDGIFM--RPNVTNAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYDVMWYAMT 643
            DGVA+  AVQ A+D TD +DTL+I TADH HAIA+NGYCGRGS +TGLCM ID     ++  PN  SDG  YTV    NG GS+L E              EDG +   RP+VTN EAMDPDY+QQ+LVPMSSETHSG DVA YA GP++HL+ GT+EQ  I+ VM +AMT
Sbjct:  338 DGVAFAEAVQMAIDMTDDSDTLIIVTADHEHAIAFNGYCGRGSDITGLCMGIDNEGVENTGEPNLGSDGKPYTVAGYLNGAGSVLIE-------------QEDGTYSGERPDVTNEEAMDPDYLQQALVPMSSETHSGTDVAAYAHGPYAHLLGGTIEQNVIFHVMHHAMT 495
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BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Match: A0A221JXS1_9RHOB (Alkaline phosphatase n=2 Tax=Sulfitobacter pseudonitzschiae TaxID=1402135 RepID=A0A221JXS1_9RHOB)

HSP 1 Score: 187 bits (475), Expect = 5.690e-48
Identity = 97/171 (56.73%), Postives = 118/171 (69.01%), Query Frame = 2 
Query:  137 DGVAYQAAVQYAMDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSSTPNFASDGSTYTVLSVGNGPGSILYEGSEEAAGPNLGEMSEDGIFM--RPNVTNAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYDVMWYAMT 643
            DGVA+  AVQ A+D TD +DTL+I TADH HAIA NGYCGRGS +TGLCM ++     H+  P   SDG  YTV+   NG GS+L E              EDG F   RP VTN EAMDPDY+QQ+LVPMSSETHSGADVA YAQGP++HL+ G++EQ  ++ +M +AMT
Sbjct:  338 DGVAFAEAVQMAIDMTDESDTLIIVTADHEHAIAMNGYCGRGSDITGLCMGVNNEGIEHTGEPLLGSDGKPYTVVGYLNGAGSVLIE-------------QEDGTFSGERPEVTNEEAMDPDYLQQALVPMSSETHSGADVAAYAQGPYAHLLGGSIEQNVLFHIMHHAMT 495
[Close]
BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Match: A0A4Y5SSC3_9RHOB (Alkaline phosphatase n=3 Tax=Paracoccus TaxID=265 RepID=A0A4Y5SSC3_9RHOB)

HSP 1 Score: 182 bits (461), Expect = 4.570e-46
Identity = 93/171 (54.39%), Postives = 114/171 (66.67%), Query Frame = 2 
Query:  137 DGVAYQAAVQYAMDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSSTPNFASDGSTYTVLSVGNGPGSILYEGSEEAAGPNLGEMSEDGIFM--RPNVTNAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYDVMWYAMT 643
            DGVA+  AVQ A+D  D  DTL++ TADH HAIA+NGYCGRGS +TGLCM I+     H+  P  A+DG  YTV    NG GS+L E              EDG +   RP V+N EAMD DY+QQ+LVPM SETH+G DVA+YA GPW+HL+ GT+EQ  I+ VM +AMT
Sbjct:  337 DGVAFAEAVQTAIDMVDDTDTLILVTADHEHAIAFNGYCGRGSDITGLCMGINDAGVEHTGEPELAADGKPYTVAGYLNGAGSVLVE-------------QEDGSYSGERPEVSNEEAMDADYLQQALVPMDSETHAGTDVALYAHGPWAHLVGGTIEQNVIFHVMHHAMT 494
[Close]
BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Match: A0A346R7Z2_9HYPH (Alkaline phosphatase n=1 Tax=Breoghania sp. L-A4 TaxID=2304600 RepID=A0A346R7Z2_9HYPH)

HSP 1 Score: 180 bits (457), Expect = 1.700e-45
Identity = 92/168 (54.76%), Postives = 115/168 (68.45%), Query Frame = 2 
Query:  137 DGVAYQAAVQYAMDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSSTPNFASDGSTYTVLSVGNGPGSILYEGSEEAAGPNLGEMSEDGIFMRPNVTNAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYDVMWYAM 640
            DGVA+  A+  A + T+  DTL+I TADH HAIA+NGYCGRGSP+TGLC +ID     H  TP  A DG  YTV+   NG GS+L E  +++               RP+VTN +A+D DYIQQ+L+PMSSETHSG DVAVYA+GPWSHL  GTVEQ +I+ VM +A+
Sbjct:  340 DGVAFADAIALADELTNDEDTLIIVTADHEHAIAFNGYCGRGSPITGLCYDIDDAGEKHLDTPLLAKDGKPYTVIGYLNGTGSVLTEQDDKSFSGT-----------RPDVTNEQAVDADYIQQALIPMSSETHSGEDVAVYAKGPWSHLFDGTVEQNYIFHVMNHAI 496
[Close]
BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Match: A0A1I5HWS8_9HYPH (Alkaline phosphatase n=1 Tax=Cohaesibacter marisflavi TaxID=655353 RepID=A0A1I5HWS8_9HYPH)

HSP 1 Score: 180 bits (456), Expect = 1.990e-45
Identity = 91/169 (53.85%), Postives = 109/169 (64.50%), Query Frame = 2 
Query:  137 DGVAYQAAVQYAMDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSSTPNFASDGSTYTVLSVGNGPGSILYEGSEEAAGPNLGEMSEDGIFMRPNVTNAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYDVMWYAMT 643
            DGVA+  A+  A++ TDP +TL++ TADH HAIA+NGYCGRGS V GLC +IDP  T HS  P    DG  YTV+   NGPGSIL                EDG   RP VT  +A D DY+QQSL+P+SSE+HSG DVAVY +GPWSHL   T+EQ  I+ VM  A T
Sbjct:  336 DGVAFAEAIAKAVEMTDPQETLIVVTADHEHAIAFNGYCGRGSDVLGLCYDIDPAGTKHSDKPLMGKDGKPYTVVGFLNGPGSIL---------------GEDGSGSRPEVTQEQATDIDYVQQSLIPLSSESHSGEDVAVYGRGPWSHLFDSTIEQNEIFHVMLQAAT 489
[Close]
BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Match: A0A0J5QH55_9RHOB (Alkaline phosphatase n=3 Tax=Puniceibacterium TaxID=1608404 RepID=A0A0J5QH55_9RHOB)

HSP 1 Score: 180 bits (456), Expect = 2.320e-45
Identity = 93/169 (55.03%), Postives = 119/169 (70.41%), Query Frame = 2 
Query:  137 DGVAYQAAVQYAMDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSSTPNFASDGSTYTVLSVGNGPGSILYEGSEEAAGPNLGEMSEDGIFMRPNVTNAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYDVMWYAMT 643
            DGVA+ AA++ AM+ T+P DTL+I TADH HAIA+NGYCGRGS +TGLCM+I+    M++  P   +DG  YTV    NG GS+L    E+A G   G        +RP+VT+ EAMDPDYIQQ+L+P SSETHSG DVA++AQGPW+HL  G +EQ  I+ VM  A+T
Sbjct:  340 DGVAFNAAIRKAMELTNPEDTLIIVTADHEHAIAFNGYCGRGSHITGLCMDINDNGMMNTGEPLLGADGKPYTVAGYLNGVGSVL---KEQADGTYSG--------VRPDVTDEEAMDPDYIQQALIPASSETHSGEDVAIFAQGPWAHLFNGVIEQNVIFHVMRQAVT 497
[Close]
BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Match: A0A2W7NA33_9RHOB (Alkaline phosphatase n=1 Tax=Hwanghaeicola aestuarii TaxID=568105 RepID=A0A2W7NA33_9RHOB)

HSP 1 Score: 180 bits (456), Expect = 3.560e-45
Identity = 94/185 (50.81%), Postives = 120/185 (64.86%), Query Frame = 2 
Query:  134 QDGVAYQAAVQYAMDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSSTPNFASDGSTYTVLSVGNGPGSILYEGSEEAAG---------PNLG--EMSEDGIFM--RPNVTNAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYDVMWYAMTHG 649
            +DG A+  A+  A + TD ADTL++ TADH H + +NGYCGRGS +TGLCME+DP    H+ TPN ASDG  YTV    NG GS+L E  E+            P++G  E     ++   RP+VT  EA D DY+QQ+L+PM SETHSG DVA+YA+GPW+HL  GT+EQ  I+ VM YAM  G
Sbjct:  337 RDGRAFAEAIAMADEMTDDADTLIVVTADHDHGLQFNGYCGRGSDITGLCMEVDPAGIEHTGTPNVASDGLPYTVAGYMNGAGSVLIEQIEDETAAADTSQTTTPDVGAAEGETQPVYSGSRPDVTPEEASDIDYLQQALIPMPSETHSGTDVALYAKGPWAHLFNGTLEQNVIFHVMNYAMNAG 521
[Close]
BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Match: A0A4Z0LPY0_9RHOB (Alkaline phosphatase n=2 Tax=Tabrizicola TaxID=1443919 RepID=A0A4Z0LPY0_9RHOB)

HSP 1 Score: 179 bits (454), Expect = 4.180e-45
Identity = 93/171 (54.39%), Postives = 119/171 (69.59%), Query Frame = 2 
Query:  131 FQDGVAYQAAVQYAMDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSSTPNFASDGSTYTVLSVGNGPGSILYEGSEEAAGPNLGEMSEDGIFMRPNVTNAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYDVMWYAMT 643
             +DGVA+  AVQ A+D T+ ++TL+I TADH HAI +NGYCGRGS +TGLCM I+     H+ TP  A+DG  YTV    NG GS+L   + +A G   G         RP VT+ +A DPDY+QQ+LVPMSSETHSG+DVAVYA GP++HL+ GT+EQ  I+ VM +AMT
Sbjct:  336 LRDGVAFAEAVQMAIDMTNDSETLIIVTADHEHAITFNGYCGRGSSITGLCMGINDEGVEHTGTPELAADGKPYTVAGYLNGAGSVL---TAQADGSYFGT--------RPTVTDEQATDPDYLQQALVPMSSETHSGSDVAVYAHGPFAHLIGGTIEQNVIFHVMHHAMT 495
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1441.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ12_ECTSI1.470e-9987.86Alkaline phosphatase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A5C4MTH0_9RHOB1.090e-4955.49Alkaline phosphatase n=1 Tax=Rubellimicrobium rubr... [more]
UPI001B8B25956.230e-4957.89alkaline phosphatase n=1 Tax=Loktanella sp. SALINA... [more]
A0A221JXS1_9RHOB5.690e-4856.73Alkaline phosphatase n=2 Tax=Sulfitobacter pseudon... [more]
A0A4Y5SSC3_9RHOB4.570e-4654.39Alkaline phosphatase n=3 Tax=Paracoccus TaxID=265 ... [more]
A0A346R7Z2_9HYPH1.700e-4554.76Alkaline phosphatase n=1 Tax=Breoghania sp. L-A4 T... [more]
A0A1I5HWS8_9HYPH1.990e-4553.85Alkaline phosphatase n=1 Tax=Cohaesibacter marisfl... [more]
A0A0J5QH55_9RHOB2.320e-4555.03Alkaline phosphatase n=3 Tax=Puniceibacterium TaxI... [more]
A0A2W7NA33_9RHOB3.560e-4550.81Alkaline phosphatase n=1 Tax=Hwanghaeicola aestuar... [more]
A0A4Z0LPY0_9RHOB4.180e-4554.39Alkaline phosphatase n=2 Tax=Tabrizicola TaxID=144... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1441contigP-littoralis_Contig1441:2..3704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ12
Preferred nameALPL
PFAMsAlk_phosphatase
Model size2302
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01077,ko:K21411
KEGG ReactionR02135,R04620
KEGG Pathwayko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020
KEGG ModuleM00126
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000287,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001501,GO:0001503,GO:0001666,GO:0001958,GO:0002020,GO:0002237,GO:0003006,GO:0003674,GO:0003824,GO:0004035,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0005903,GO:0006139,GO:0006464,GO:0006470,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007584,GO:0007586,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009897,GO:0009986,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016020,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0019362,GO:0019538,GO:0019637,GO:0019899,GO:0021915,GO:0022008,GO:0022414,GO:0030016,GO:0030154,GO:0031012,GO:0031090,GO:0031214,GO:0031224,GO:0031225,GO:0031226,GO:0031667,GO:0031960,GO:0032496,GO:0032501,GO:0032502,GO:0033273,GO:0033280,GO:0033993,GO:0034505,GO:0034641,GO:0035094,GO:0035264,GO:0035295,GO:0036075,GO:0036211,GO:0036293,GO:0036342,GO:0040007,GO:0042221,GO:0042476,GO:0042493,GO:0042578,GO:0042802,GO:0042803,GO:0043009,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043292,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045017,GO:0046473,GO:0046474,GO:0046483,GO:0046486,GO:0046496,GO:0046658,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048513,GO:0048545,GO:0048589,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051384,GO:0051704,GO:0051707,GO:0051716,GO:0055086,GO:0060348,GO:0060349,GO:0060350,GO:0060429,GO:0065010,GO:0070482,GO:0070887,GO:0071310,GO:0071407,GO:0071529,GO:0071704,GO:0071944,GO:0072524,GO:0090407,GO:0098552,GO:0098588,GO:0098805,GO:0098852,GO:0098862,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901564,GO:1901576,GO:1901700
Exons5
Evalue5.73e-99
EggNOG OGsCOG1785@1|root,KOG4126@2759|Eukaryota
EC3.1.3.1
Descriptionalkaline phosphatase activity
Cds size480
COG categoryP
BRITEko00000,ko00001,ko00002,ko00537,ko01000,ko03400,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1441.1.1prot_P-littoralis_Contig1441.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1441 174..2039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789679.8856971-UTR-P-littoralis_Contig1441:1..1731680789679.8856971-UTR-P-littoralis_Contig1441:1..173Pylaiella littoralis U1_48UTRP-littoralis_Contig1441 2..173 +
1680789679.9402912-UTR-P-littoralis_Contig1441:2039..30451680789679.9402912-UTR-P-littoralis_Contig1441:2039..3045Pylaiella littoralis U1_48UTRP-littoralis_Contig1441 2040..3045 +
1680789679.9538934-UTR-P-littoralis_Contig1441:3060..37041680789679.9538934-UTR-P-littoralis_Contig1441:3060..3704Pylaiella littoralis U1_48UTRP-littoralis_Contig1441 3061..3704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789679.8984084-CDS-P-littoralis_Contig1441:173..4101680789679.8984084-CDS-P-littoralis_Contig1441:173..410Pylaiella littoralis U1_48CDSP-littoralis_Contig1441 174..410 +
1680789679.9123456-CDS-P-littoralis_Contig1441:795..9341680789679.9123456-CDS-P-littoralis_Contig1441:795..934Pylaiella littoralis U1_48CDSP-littoralis_Contig1441 796..934 +
1680789679.9226305-CDS-P-littoralis_Contig1441:1534..16181680789679.9226305-CDS-P-littoralis_Contig1441:1534..1618Pylaiella littoralis U1_48CDSP-littoralis_Contig1441 1535..1618 +
1680789679.931212-CDS-P-littoralis_Contig1441:2019..20391680789679.931212-CDS-P-littoralis_Contig1441:2019..2039Pylaiella littoralis U1_48CDSP-littoralis_Contig1441 2020..2039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1441.1.1

>prot_P-littoralis_Contig1441.1.1 ID=prot_P-littoralis_Contig1441.1.1|Name=mRNA_P-littoralis_Contig1441.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
MDNTDPADTLVISTADHGHAIAYNGYCGRGSPVTGLCMEIDPVTTMHSST
PNFASDGSTYTVLSVGNGPGSILYEGSEEAAGPNLGEMSEDGIFMRPNVT
NAEAMDPDYIQQSLVPMSSETHSGADVAVYAQGPWSHLMVGTVEQTHIYD
VMWYAMTHG*
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mRNA from alignment at P-littoralis_Contig1441:2..3704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1441.1.1 ID=mRNA_P-littoralis_Contig1441.1.1|Name=mRNA_P-littoralis_Contig1441.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3703bp|location=Sequence derived from alignment at P-littoralis_Contig1441:2..3704+ (Pylaiella littoralis U1_48)
ACTCATCAGATAATGTACCGTTGCAGCCTTCCTGAGCTTATCAGGCCCAA
CTTCGTAGAGATTAGTCCATACCCCCCTGTCGTCTTCAGTCAACCAATGG
GAAATGCGCATTAATAAAATGTGAAACAGGTTCCAAGACGGAGTGGCATA
CCAGGCGGCCGTGCAGTACGCCATGGACAACACCGACCCCGCGGACACCC
TCGTCATTTCTACCGCTGATCACGGCCACGCGATCGCCTACAACGGCTAC
TGCGGACGCGGCTCCCCCGTGACCGGCCTGTGCATGGAGATAGATCCGGT
CACCACGATGCACTCAAGCACCCCCAACTTCGCCTCAGACGGGTCGACTT
ACACGGTCTTGTCCGTCGGAAACGGCCCCGGTTCCATCCTTTACGAGGGT
TCTGAAGAGGTAAAAGGGGGTGGTCGGATTTGGTTTTGACTGGGTGCGAT
CAAAATGCCCAACGGCAACCCAAAGGCGCACTGTGTTTGTTTGCGACGAA
CGGAGTATAGTTATTTACATCTACTCAAATGATATCTCAAAACAACGCTG
CGGCGCGGCAGAAAATTACGTCCTTTAGCCGAGAAAATCGTTCTTGTCGT
CGCCTCTCCCCGCGTGTGTATGTCTGTGTGTGTCTGTGTGTCTGTGTGTC
TGTGTGTGTGCGTGTGTGTATGTGTGTGCATGGATGCGTTTTGGCGTGTT
TTCATGTGTCGTGTGTTTAAGCCCCTTGCTTCTCTCCCCCCTCCCCCTTA
TTTTCCGCGCTCTGTTGAAAACCGACGTGTGTCCACCCATCCAGGCGGCG
GGCCCGAACTTGGGCGAGATGTCTGAGGACGGCATCTTCATGCGGCCAAA
CGTTACCAACGCCGAAGCTATGGACCCAGACTACATCCAGCAGTCGCTCG
TGCCCATGAGTTCTGAGACCCACTCCGGCGCCGGTAAATTAACTCTTTAA
AAACACCCGTTGTTGACCATCAGCGGTGATATCGTATGCAGGCCTTCGTT
GGTGATTGAGGAGCGCTGAGCTCCTGACTGGTGTCCCAAAGCTGCACTAA
ATATTGCGCATGGCACCCTCCCCCTTCTTACAAGAAACTCAAGCGTCACC
TTAGCTTTTCGTTCTTTCGTACGGCGAAGATCGGTCATACCCTGCTCTGC
ACATGCCAATACGTACGGCGAATAGAGCCATATTATCTCACATACATAGC
GGCGACCGCTACGTTCGTCTGCCGTTTCTACATAGTCGGAGAAGTGTGAT
GACCCGTGCAACTCTAGACCAATTGCCGTCCCCGACCCCTCCTTTTTGAA
TCTCCTTCTCCCTTAATTGTACTTGTATGTGTATTATTCTTGACTACGCG
CAGCCAGCGTATGCTCAAAACATATTCGCGGCGTTTGCGGCCTATGCTTT
ATCTGTTGAATTCACACGAAGGGAAATGACATTCACTATCCTTGTTGCGC
GTCGCAAATTGTAATCCCTCCACCTCCGTGCGCACCGGTCACTGCGCCGC
TGCTACCACGTACGGTGTGCTTGTTACGTGCAGACGTCGCCGTGTACGCC
CAAGGCCCTTGGTCGCATCTTATGGTTGGGACTGTGGAGCAGACGCACAT
CTACGACGTCATGTGGTGTGAGTTTATCTGCCGATTTTTGTATAGATGTT
CTATTTTGTTTTTGTTTTGGAAATTGTACACTGCATGCGCACGCAATGGT
TGAGATTCCTTGGAAGGGTAGCTAGTGTAGAGACGTTCCTGTACTTACTG
CCGTTACGATCACATATTTTGATCCCCACAACACCTGCTCTACAACCCGA
TCCTCTTTTTTTTTCAATCCTCTAAACTCATGGAAGCATGATGGTTGGCA
CAGAAGTATCAAAGCCAAAATGTGCGTTGTTGGATGAGTGCTGCTTGCGG
GCGGAAGCATGCCGAACGACAGTGCCTCAACAACCCACTTTTTTGGTTAG
CACAAGTCAAGGATGGCGACCCCCCCCCCCACGCACTTCGGCCCGCCGTT
GTCCTCTTGTGCTCGCAGACGCGATGACCCACGGATAACTTCACCCACGT
TGTTTTGACGGCGAGGAACCTTCGTGGGAAGTCGGTATGCTGAATTTTCT
GAGTCACGGAGCATCGTTTCATGAATCATGCATTCATTGGACTTGCTCCA
GGAAGCGTCGTGCTCTACTCCGAGGAATTCAAGCAATTTTACAGCAGTGC
ACACCGGAGGGTGATACAGCTATATACTAGGAGAAGCTTACAAACAGGCG
CTGTGTTGTTACGCCCGTTGATTTCTGCGGCTGAACTGTCCCGTGTACTG
TTATGTCTTCCTTTTTTGTTTCTCCCACTGAGCGGCCCTTGTCGTATTTC
GATGGAAAGGTTCAAACAACCTCCTTCCCTTCGCTCAAATTGTGTAGGAG
TTTGAACACTTTTGTTTTATTATGCGCGTAAGAAAATTTGAACAAAGAAC
TACATGTATGAAGAAGTACTTTCAGTAGTATTTGATGTAAAGAGAAGCCC
CGAAAAAATTCCACTGCCGTACGAGTATGCATCTACACGCGTTTGACACG
TGGTGCTTTGTCTCCTTTCTCGTACGCGGTTTGCTTGCTGTTGTAGTGTT
GTTGCGCAAGCAGAGCAGATCACCGTGTGTAGGCGTTTCATTCCCTGCTG
GGGTCTGTTGTTTTCACCCGGTCTTCATTTTGCGCCTCTTTTTATGGCAT
TTTTGAGTTTCATTTACTTCTATCCGTTTTTCCCACCTACTAACTGGTTG
TAACTGACAATAGCGACTTTCATTGTGGATTTAGACCTTAAAGCGTTGAA
AACTGGCATACAGTACCTTGAAGTTTTATTTTTGTGGTTTCTTTTTTCTG
CCCTGCTGCCTTTTGCCCTCTCACCTCTGCTTGCGTTGCCTAAAACTGTC
GCTTGGCCGGTGAAGAGAGTTGCAAGCCCGATGTCCATTTTTCTTGGCAT
TTTTGGCAACTGAGTTCGGTTTCTATTGTCACTTCTTATTTCATTTTTGA
TTTTGCCCTGGGCCAGGCTCCCTTTCTCTTTCTGTCCTTTTAGCGTTGTG
TGATTTTAGCGATGTGTCATATTTAGGGGTCCTTTTTTTTTTATAGGAAC
GATTCTTAATGTGCAGATAATCCACACATCGTATTCTAACTTGAATAAAA
TTATTCTGGTTATGTCGTCATTTTTACAAGTTTGTTTTGGCAAGCGTTGG
ATAAGAATGTGTGTGGGTGGACTCCTTCCTGCTCTCGCACTACCTTTTGG
GGGGGAGGTTGTCTCGCTCAGGTTGTCTCTGGATCATCTCCAGAGGTTCT
CCTACCTATTTCCTGCGGGGAGCGGAGAAGGCTATGTTAGCTTGCATTTT
CAGCATGCTGTGTCATGTGATGGATCCTGTTTTCAATGATAATTAATCGT
GGCGTTCGAAGATTGGTTTTTTATCGGTAAATCATCGTTAGATGCACACT
ATTTTGTGCGCACATCATGTAAAGAGCAAGGGATACAGTGTTGTCTAGCC
GGACACGCTGCAGGGGTTCGTGGCCACCTTGCGCACTCACGCAGGATGTT
GCCTCGGCTCTCGGTGATGTGTGTAGCTCGATCTACTTCGGCCTCTTTCC
CTGAACCAGGTGAGGGCCGTCGCCCTGGTCTTCAGCAACCCCACAACTGG
CATTGGCCACGCGGCCAGTACGATATATGTCCCTCATCCCTTTTTCACTT
CCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1441:2..3704+

>mRNA_P-littoralis_Contig1441.1.1 ID=mRNA_P-littoralis_Contig1441.1.1|Name=mRNA_P-littoralis_Contig1441.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig1441:2..3704+ (Pylaiella littoralis U1_48)
ATGGACAACACCGACCCCGCGGACACCCTCGTCATTTCTACCGCTGATCA
CGGCCACGCGATCGCCTACAACGGCTACTGCGGACGCGGCTCCCCCGTGA
CCGGCCTGTGCATGGAGATAGATCCGGTCACCACGATGCACTCAAGCACC
CCCAACTTCGCCTCAGACGGGTCGACTTACACGGTCTTGTCCGTCGGAAA
CGGCCCCGGTTCCATCCTTTACGAGGGTTCTGAAGAGGCGGCGGGCCCGA
ACTTGGGCGAGATGTCTGAGGACGGCATCTTCATGCGGCCAAACGTTACC
AACGCCGAAGCTATGGACCCAGACTACATCCAGCAGTCGCTCGTGCCCAT
GAGTTCTGAGACCCACTCCGGCGCCGACGTCGCCGTGTACGCCCAAGGCC
CTTGGTCGCATCTTATGGTTGGGACTGTGGAGCAGACGCACATCTACGAC
GTCATGTGGTACGCGATGACCCACGGATAA
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