mRNA_P-littoralis_Contig1441.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1441.7.1
Unique NamemRNA_P-littoralis_Contig1441.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1441.7.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.410e-26
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:  233 PYKNAFAILKQALHVAHVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVLPRAVYRGRKCNVPEAWFMWY 442
            PY NAF+IL +AL V  VGV FKLRLSFLEP+KTRG+WLKDNPPS  +VLPRA Y GR C+  EAWF+W+
Sbjct:   91 PYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160
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BLAST of mRNA_P-littoralis_Contig1441.7.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.820e-17
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  284 VGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVLPRAVYRGRKCNVPEAWFMWYT 445
            +GV FKLRL+FL P+K+RG+WLKDNPP   ++LPRA YR R+C+  E WF+W T
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54
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BLAST of mRNA_P-littoralis_Contig1441.7.1 vs. uniprot
Match: A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR)

HSP 1 Score: 52.0 bits (123), Expect = 3.380e-5
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 2 
Query:  233 PYKNAFAILKQALHVAHVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVL----PRAVYRG--RKCNVPEAWFMW 439
            P+  A AIL  A   A VGV F LRLS+LEP+K RG W  ++  +++ ++    PR  + G  R  +V  AW +W
Sbjct:  102 PFNEASAILPLAYKHASVGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVW 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1441.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE1.410e-2670.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T5_9PHAE1.820e-1761.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A433N1N0_CHLFR3.380e-540.00Uncharacterized protein n=1 Tax=Chlorogloeopsis fr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1441contigP-littoralis_Contig1441:16783..17662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size448
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789679.816187-UTR-P-littoralis_Contig1441:16782..168121680789679.816187-UTR-P-littoralis_Contig1441:16782..16812Pylaiella littoralis U1_48UTRP-littoralis_Contig1441 16783..16812 +
1680789679.8541033-UTR-P-littoralis_Contig1441:17544..176621680789679.8541033-UTR-P-littoralis_Contig1441:17544..17662Pylaiella littoralis U1_48UTRP-littoralis_Contig1441 17545..17662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789679.82659-CDS-P-littoralis_Contig1441:16812..169681680789679.82659-CDS-P-littoralis_Contig1441:16812..16968Pylaiella littoralis U1_48CDSP-littoralis_Contig1441 16813..16968 +
1680789679.842695-CDS-P-littoralis_Contig1441:17400..175441680789679.842695-CDS-P-littoralis_Contig1441:17400..17544Pylaiella littoralis U1_48CDSP-littoralis_Contig1441 17401..17544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1441.7.1prot_P-littoralis_Contig1441.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1441 16813..17544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1441.7.1

>prot_P-littoralis_Contig1441.7.1 ID=prot_P-littoralis_Contig1441.7.1|Name=mRNA_P-littoralis_Contig1441.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MMAHLDVGGLVLDCCGSTRNAVCRLLTERGFRVQTNDINSRQARQTIACT
KYAYGQGDNRPDWVVTSPIQKCLRHPEAGTACSSCRRCFQAQAVVPRAF*
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mRNA from alignment at P-littoralis_Contig1441:16783..17662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1441.7.1 ID=mRNA_P-littoralis_Contig1441.7.1|Name=mRNA_P-littoralis_Contig1441.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=880bp|location=Sequence derived from alignment at P-littoralis_Contig1441:16783..17662+ (Pylaiella littoralis U1_48)
TATCGGCATCCCTTGGGACAGGTGATTGACATGATGGCCCACTTGGACGT
CGGTGGTCTTGTTCTTGACTGCTGCGGGAGCACGAGAAATGCCGTGTGTC
GGCTGCTGACAGAAAGAGGCTTTCGTGTTCAGACGAACGACATCAACAGC
AGGCAAGCGAGACAGACAATTGCATGTACTAAGTACGTTCAACGGCAGTG
CAAACCAATTATCCAATGCCGCCTTCTCGTCCACGTGCTACACGTAATGG
TGTGATATATCACAAGGGCGGGATGATAAAAATAGGCGAAACAAATATTT
TACCTCCTGAAGGATAACACTGCTTTTTCTCAACGTTGTCGATTCTTGAT
TTACGTTAGGCGACCCAGAATGCCCTGATGTTTGAGCCGACAAATCTCGG
AAGAAAGCTTTTCAGGTCATCGCCTGCGGAGGATAAGCCTTTCTGAAAGG
GGTGGTGATCATGGTGTACACGATACCAAATTCGCCACAGGCTCACAAAT
ATTCGCGTACACGATCCACGTTCGTTCTGTCGCCTACGCGTGCATGCCTG
TGTTGTTCCCTCACGACAGACTGCCAGCGGACACACACCTCGATGCCTCG
GGTGCAGATTTTGTGCAGGCGTACGGGCAGGGAGATAATCGCCCCGACTG
GGTCGTCACGAGCCCCATACAAAAATGCCTTCGCCATCCTGAAGCAGGCA
CTGCATGTAGCTCATGTCGGCGTTGTTTTCAAGCTCAGGCTGTCGTTCCT
CGAGCCTTCTAAAACTCGCGGACAGTGGTTGAAAGACAACCCACCTTCTC
TCACGATAGTTCTGCCCCGCGCAGTTTACCGGGGTAGGAAATGTAATGTC
CCGGAGGCATGGTTCATGTGGTACACTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1441:16783..17662+

>mRNA_P-littoralis_Contig1441.7.1 ID=mRNA_P-littoralis_Contig1441.7.1|Name=mRNA_P-littoralis_Contig1441.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1441:16783..17662+ (Pylaiella littoralis U1_48)
ATGATGGCCCACTTGGACGTCGGTGGTCTTGTTCTTGACTGCTGCGGGAG
CACGAGAAATGCCGTGTGTCGGCTGCTGACAGAAAGAGGCTTTCGTGTTC
AGACGAACGACATCAACAGCAGGCAAGCGAGACAGACAATTGCATGTACT
AAGTACGCGTACGGGCAGGGAGATAATCGCCCCGACTGGGTCGTCACGAG
CCCCATACAAAAATGCCTTCGCCATCCTGAAGCAGGCACTGCATGTAGCT
CATGTCGGCGTTGTTTTCAAGCTCAGGCTGTCGTTCCTCGAGCCTTCTAA
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