mRNA_P-littoralis_Contig144.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.110.1
Unique NamemRNA_P-littoralis_Contig144.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig144.110.1 vs. uniprot
Match: A0A6H5LBA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA6_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.020e-30
Identity = 233/687 (33.92%), Postives = 284/687 (41.34%), Query Frame = 3 
Query:   18 SAAPMVGACGLVVGCTGDKELTVITQEELGALGSLQQVHLFVKLSALRLGGVWCGDCHKSLVDATSGGNQQHQQQELQPETGRKRDHAEISEATAHQPPLSSPQQQELQNQPTXXXXXXXXXXXXPALPVLPLATSEVAATQEPRELAARELAAMR-DAPSEATTPSIDATS------------AEMPSGPRLNITSPYIPPREEAPSGVNLPV-LAPAVENGVNGGTGDASNGAKCDSSNSVDGNNGGGYPVAAPHAVYGAPPPPALPI-TPVSIPPTPATSGDGSGAFGGGDETGVAAGTGVTTTTTGALALSSVAKMPQWSVPMP-AQVAPAVSQQ------------------------FPALPASSTLQ---------QMIAMAATTAAMEAVHQHQFPLPQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---DGAPLEGVALPPGQHFPQQLQQVAGFAGLEGGLNPPEATAAATTTTHEETTPSQFGPPLTGMGAPTSPTTAVVSTAMHGLTAAEGQVAYPAWMPSMLPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASSNPPSLSHS----ILVTPIPIRRSRDEVLDASIECFFPGCHTRPSYGMKGDKKPSVCVDHRTDGMVGIKYTRSRICD 1910
            S  P VG CGLV GC GDK++T ITQE+L  LGSL+ V LFVKLSALR+GG+WC DCH+ L +A SG  QQ   Q+LQPE+GRKRDHAE      H+ P   P                                  VA   + RE     LAAMR + PS+A +    AT              E   G   + ++PY  P   A   VNL   L P++ENG  G +   + G                       A+     PPALP  T  +   +PA  G        G+E  VA             A ++ A +P  S P+P A VA A                            + A P S   Q         QM AM A T+AMEA +Q   PL QHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                GAP  G A+   +                                         GP   G GAPTSPT ++     HG  AA GQ+ YP WM  +LPQQQ                                                     +P  + H+      +     RR  + VL+   EC   GC TRPSYGM+GDK+P+ CVDH   GMV +K++RSR CD
Sbjct:    2 SETPAVGPCGLVAGCAGDKQVTFITQEQLNGLGSLRDVDLFVKLSALRVGGIWCEDCHQLLFNAASGSKQQ---QQLQPESGRKRDHAETM---THERPQPQPL---------------------------------VAPPGDTREPVGHGLAAMRGNTPSDAASTPQAATXXXXXXXXXXXXPVEEADGSTYSDSAPY--PSPPAAPEVNLAAALPPSIENGAGGESAGGATG----------------------QALM----PPALPAGTGSTTLVSPAAEG--------GNEASVAQ-----------AAAAAAAPLPGASQPVPLAGVATATQXXXXXXXXXXXXXXXXXXXXXXAVALYGATPVSGVPQAALWPQQALQMAAMEAATSAMEAANQLP-PLQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGLLGGTVIRVGPAGAPAGGPAVSMHETVVPLXXXXXXXXXXXXXXXXXXXXXXX-----------XXGP---GEGAPTSPTASI-----HGAPAAVGQLPYPVWMGPVLPQQQQDSQGAGGSGVSARSPKSRSGVMGGRKGVGLGGGGGIDLNGRLL--------QHPAYVMHAGGALESLETAERRRQEELVLEDYDECCVSGCATRPSYGMEGDKRPTACVDHAAIGMVIVKHSRSRCCD 574
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBA6_9PHAE1.020e-3033.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:376495..379938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2819
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-22_003550.1
Cds size2790
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.6903958-UTR-P-littoralis_Contig144:376494..3765231680789678.6903958-UTR-P-littoralis_Contig144:376494..376523Pylaiella littoralis U1_48UTRP-littoralis_Contig144 376495..376523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.711176-CDS-P-littoralis_Contig144:376523..3780891680789678.711176-CDS-P-littoralis_Contig144:376523..378089Pylaiella littoralis U1_48CDSP-littoralis_Contig144 376524..378089 +
1680789678.7227333-CDS-P-littoralis_Contig144:378218..3783121680789678.7227333-CDS-P-littoralis_Contig144:378218..378312Pylaiella littoralis U1_48CDSP-littoralis_Contig144 378219..378312 +
1680789678.7310026-CDS-P-littoralis_Contig144:378808..3799381680789678.7310026-CDS-P-littoralis_Contig144:378808..379938Pylaiella littoralis U1_48CDSP-littoralis_Contig144 378809..379938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.110.1prot_P-littoralis_Contig144.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 376524..379938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.110.1

>prot_P-littoralis_Contig144.110.1 ID=prot_P-littoralis_Contig144.110.1|Name=mRNA_P-littoralis_Contig144.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=930bp
MVGACGLVVGCTGDKELTVITQEELGALGSLQQVHLFVKLSALRLGGVWC
GDCHKSLVDATSGGNQQHQQQELQPETGRKRDHAEISEATAHQPPLSSPQ
QQELQNQPTPDPQLQLKQEQPPALPVLPLATSEVAATQEPRELAARELAA
MRDAPSEATTPSIDATSAEMPSGPRLNITSPYIPPREEAPSGVNLPVLAP
AVENGVNGGTGDASNGAKCDSSNSVDGNNGGGYPVAAPHAVYGAPPPPAL
PITPVSIPPTPATSGDGSGAFGGGDETGVAAGTGVTTTTTGALALSSVAK
MPQWSVPMPAQVAPAVSQQFPALPASSTLQQMIAMAATTAAMEAVHQHQF
PLPQHHPPPQLQAALHHHSTPAQQLLPPPYQLPQHHHHQQQHQQQQQQQQ
QDGAPLEGVALPPGQHFPQQLQQVAGFAGLEGGLNPPEATAAATTTTHEE
TTPSQFGPPLTGMGAPTSPTTAVVSTAMHGLTAAEGQVAYPAWMPSMLPQ
QQQQQQQQQQQSQDIRGDGGTGSTASAAAGASAAVAGGHEGGDVGGEGGD
GSASSNPPSLSHSILVTPIPIRRSRDEVLDASIECFFPGCHTRPSYGMKG
DKKPSVCVDHRTDGMVGIKYTRSRICDFNDCQEYPSYNFKGKRRPRRCEA
HLLDGMVDVKAPCCDHPGCSTLPYYGEGKDKKRRRCALHRLPGMVDVKSR
RCEFEGCITQPTYGVQGDVKAKRCAKHRDQGMINIVHRHCEFPGCTVQPY
YGLEGNRGGSHCAAHKLPGMVKTKGQRCIHPGCSTRPSYGNDGDKKPSMC
GKHKLMGMVDVINRRCEEPGCVTQPTHAVEGSNLSTRCAVHHLPGMVNIK
SRRCGFEGCNTQPYYGMPGDKRGSRCSKHKEKDMVDVHNRRCTFENCRVS
ASFGIKEDGKGATHCAKHKLPHMTPLYRRK
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mRNA from alignment at P-littoralis_Contig144:376495..379938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.110.1 ID=mRNA_P-littoralis_Contig144.110.1|Name=mRNA_P-littoralis_Contig144.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3444bp|location=Sequence derived from alignment at P-littoralis_Contig144:376495..379938+ (Pylaiella littoralis U1_48)
AGGTGCGCGGCGAGACGTCAGCCGCGCCCATGGTGGGTGCGTGCGGGCTC
GTGGTAGGGTGCACGGGAGACAAGGAGCTGACCGTCATTACTCAGGAGGA
GCTGGGTGCACTTGGCTCTTTGCAACAGGTGCACTTGTTCGTGAAGCTGT
CTGCCTTGCGGCTCGGCGGCGTTTGGTGCGGGGATTGCCACAAATCGCTC
GTTGATGCCACATCCGGCGGCAATCAACAACACCAACAGCAGGAGCTGCA
GCCTGAGACCGGCCGCAAGCGAGACCATGCAGAGATCTCGGAGGCGACGG
CACACCAGCCTCCGCTCTCATCGCCACAGCAGCAGGAGCTGCAGAACCAA
CCCACGCCCGATCCTCAGCTGCAGTTGAAACAGGAACAGCCGCCGGCGCT
GCCGGTGCTGCCCCTCGCAACAAGCGAAGTCGCTGCCACTCAAGAACCCC
GCGAGCTCGCAGCCCGTGAACTCGCAGCTATGCGGGATGCACCATCGGAG
GCTACTACCCCGTCGATAGACGCCACCTCTGCCGAAATGCCCTCTGGACC
CAGGCTCAACATTACCTCCCCGTACATACCCCCCCGCGAAGAGGCTCCTT
CAGGAGTGAACTTGCCGGTGCTAGCTCCCGCCGTTGAAAATGGCGTCAAC
GGCGGAACCGGCGATGCCTCCAACGGGGCTAAATGCGACTCTTCCAATAG
TGTTGACGGGAACAACGGGGGGGGGTACCCCGTTGCTGCGCCCCATGCTG
TCTACGGAGCCCCCCCTCCCCCCGCTCTCCCGATTACTCCGGTGTCCATA
CCACCAACACCCGCAACGAGTGGTGATGGCAGTGGTGCCTTTGGTGGCGG
TGATGAAACGGGCGTAGCTGCGGGTACGGGTGTGACCACGACGACAACGG
GGGCGCTGGCGTTGTCCAGCGTAGCGAAGATGCCGCAATGGTCTGTTCCT
ATGCCGGCCCAGGTAGCACCAGCGGTGAGTCAGCAGTTTCCGGCGCTGCC
GGCGTCGTCAACGCTGCAACAAATGATAGCGATGGCAGCGACCACTGCGG
CGATGGAGGCTGTCCATCAACATCAATTCCCCCTGCCGCAGCACCATCCA
CCTCCGCAACTACAGGCCGCGCTGCATCACCACTCCACACCTGCCCAGCA
GCTCTTGCCGCCGCCATACCAATTGCCACAACACCACCACCACCAACAAC
AACATCAACAACAACAACAACAACAGCAGCAGGATGGCGCACCTCTGGAG
GGGGTGGCCCTACCACCTGGTCAGCACTTTCCCCAGCAACTACAGCAAGT
GGCAGGGTTTGCTGGCCTTGAAGGTGGCTTGAACCCGCCCGAAGCCACTG
CCGCCGCCACTACCACCACTCACGAGGAAACCACGCCATCCCAGTTCGGG
CCACCCCTCACGGGGATGGGGGCCCCTACTTCCCCGACCACTGCCGTGGT
TAGCACCGCGATGCATGGGCTCACCGCCGCAGAGGGGCAGGTGGCCTACC
CGGCGTGGATGCCTTCGATGCTGCCTCAGCAACAGCAGCAGCAGCAGCAG
CAGCAACAGCAATCGCAAGACATTAGGGGTGATGGGGGGACGGGTGTCGC
CGGACCTCCTTCTACTGCTGCGGCGGCCGCGGCGGCTGCCGATGCCGCTG
CCACGATCGCTGCTGCCGCTGCTGGGCGAAGCCTGAAGTCGCGGTTGGTG
GGCCCTCGACCACCGAACTCGGAGTCTACCGCTTCAGCAGCGGCAGGCGC
ATCGGCAGCGGTGGCCGGAGGGCACGAAGGCGGAGACGTGGGAGGGGAGG
GTGGGGATGGCAGTGCCTGTCACGGGTTTACTAGTGTGGAAGGCGGGACG
ATGCCGCATTCCGTGCAGATGACGGGTATGATTGGCGAGGGGGTGCTTCC
GCCGGGCATAGGGATGGGGCCGCAGTTGTCGGTACCTCCGCCGAGACCGG
ACCAAGACAAACAGAGGTGAGAGACAGGGTGGCGAACTTTTTGGCGTGTT
TTTCTACGCTCATTACAAAAGTTATTGATATTTTTTAGTCGTCGATCTGT
TGAAACAATGGTGCCGCGTACCGCTGTTGTGTTGTTGGCTTCATGTTCAG
CTATCAACTTTCGTGCACTGCACCCGCTTTTGTAGCCAATACGCGAAAAC
GGAGGGAGGTCGCCTCATGTGCTCCTTGCGCTCGGTTAATCTGTTTTACG
CTGCCCGGCGGGCCAACAAAGACCACAGGCAGTGGCACAAAACAGGTATC
GGCCACGAATTCTCTGTTCGCGGCCCTTTTTTTTGTTTGTCTCTCTTTTC
GTCCGAAAGAGCAGCTTCGAATCCCCCGTCTCTCTCACACTCTATTCTTG
TAACCCCTATTCCGATTCGCCGCAGCAGGGACGAAGTCCTGGACGCCAGC
ATCGAGTGCTTCTTCCCGGGGTGCCACACTAGACCATCCTACGGCATGAA
GGGAGACAAGAAGCCCTCCGTGTGCGTGGATCACCGTACCGACGGCATGG
TCGGTATCAAGTACACCCGGAGCCGCATCTGCGACTTCAACGACTGCCAA
GAATACCCCTCCTACAACTTCAAGGGCAAGAGGCGCCCCCGCCGGTGCGA
GGCGCACCTGCTGGACGGCATGGTGGACGTCAAGGCGCCCTGCTGCGATC
ACCCCGGGTGCTCGACGCTGCCGTACTACGGGGAGGGAAAGGACAAGAAG
CGGCGCCGCTGCGCCCTGCACAGACTGCCGGGGATGGTGGACGTCAAGAG
CCGGCGGTGCGAGTTCGAGGGTTGCATAACCCAGCCGACGTACGGAGTGC
AGGGCGACGTCAAGGCGAAGCGGTGCGCCAAGCACAGGGACCAGGGCATG
ATCAACATCGTGCACAGGCACTGCGAGTTCCCGGGGTGCACGGTGCAGCC
GTACTACGGGCTGGAGGGTAACCGCGGAGGGAGCCACTGCGCGGCGCACA
AGCTTCCCGGGATGGTGAAGACCAAGGGGCAGCGGTGCATCCACCCGGGG
TGCTCCACTCGCCCCAGCTACGGCAATGACGGGGACAAAAAGCCCAGCAT
GTGCGGCAAGCATAAGCTGATGGGGATGGTGGACGTGATCAATCGGCGCT
GCGAAGAGCCCGGGTGCGTCACGCAGCCGACGCACGCCGTGGAGGGGAGC
AACCTGTCGACGCGGTGCGCGGTGCACCACCTGCCCGGGATGGTCAACAT
CAAGTCCCGCCGGTGCGGCTTCGAGGGGTGCAACACGCAGCCGTACTACG
GGATGCCTGGGGACAAGAGAGGGTCCCGGTGTTCTAAGCACAAGGAGAAG
GACATGGTGGACGTGCACAACCGGCGATGCACCTTCGAAAACTGCCGGGT
TTCGGCGTCTTTCGGGATCAAGGAGGACGGGAAGGGGGCAACGCACTGCG
CCAAACACAAGCTTCCGCACATGACCCCCCTCTACCGCAGAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:376495..379938+

>mRNA_P-littoralis_Contig144.110.1 ID=mRNA_P-littoralis_Contig144.110.1|Name=mRNA_P-littoralis_Contig144.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2790bp|location=Sequence derived from alignment at P-littoralis_Contig144:376495..379938+ (Pylaiella littoralis U1_48)
ATGGTGGGTGCGTGCGGGCTCGTGGTAGGGTGCACGGGAGACAAGGAGCT
GACCGTCATTACTCAGGAGGAGCTGGGTGCACTTGGCTCTTTGCAACAGG
TGCACTTGTTCGTGAAGCTGTCTGCCTTGCGGCTCGGCGGCGTTTGGTGC
GGGGATTGCCACAAATCGCTCGTTGATGCCACATCCGGCGGCAATCAACA
ACACCAACAGCAGGAGCTGCAGCCTGAGACCGGCCGCAAGCGAGACCATG
CAGAGATCTCGGAGGCGACGGCACACCAGCCTCCGCTCTCATCGCCACAG
CAGCAGGAGCTGCAGAACCAACCCACGCCCGATCCTCAGCTGCAGTTGAA
ACAGGAACAGCCGCCGGCGCTGCCGGTGCTGCCCCTCGCAACAAGCGAAG
TCGCTGCCACTCAAGAACCCCGCGAGCTCGCAGCCCGTGAACTCGCAGCT
ATGCGGGATGCACCATCGGAGGCTACTACCCCGTCGATAGACGCCACCTC
TGCCGAAATGCCCTCTGGACCCAGGCTCAACATTACCTCCCCGTACATAC
CCCCCCGCGAAGAGGCTCCTTCAGGAGTGAACTTGCCGGTGCTAGCTCCC
GCCGTTGAAAATGGCGTCAACGGCGGAACCGGCGATGCCTCCAACGGGGC
TAAATGCGACTCTTCCAATAGTGTTGACGGGAACAACGGGGGGGGGTACC
CCGTTGCTGCGCCCCATGCTGTCTACGGAGCCCCCCCTCCCCCCGCTCTC
CCGATTACTCCGGTGTCCATACCACCAACACCCGCAACGAGTGGTGATGG
CAGTGGTGCCTTTGGTGGCGGTGATGAAACGGGCGTAGCTGCGGGTACGG
GTGTGACCACGACGACAACGGGGGCGCTGGCGTTGTCCAGCGTAGCGAAG
ATGCCGCAATGGTCTGTTCCTATGCCGGCCCAGGTAGCACCAGCGGTGAG
TCAGCAGTTTCCGGCGCTGCCGGCGTCGTCAACGCTGCAACAAATGATAG
CGATGGCAGCGACCACTGCGGCGATGGAGGCTGTCCATCAACATCAATTC
CCCCTGCCGCAGCACCATCCACCTCCGCAACTACAGGCCGCGCTGCATCA
CCACTCCACACCTGCCCAGCAGCTCTTGCCGCCGCCATACCAATTGCCAC
AACACCACCACCACCAACAACAACATCAACAACAACAACAACAACAGCAG
CAGGATGGCGCACCTCTGGAGGGGGTGGCCCTACCACCTGGTCAGCACTT
TCCCCAGCAACTACAGCAAGTGGCAGGGTTTGCTGGCCTTGAAGGTGGCT
TGAACCCGCCCGAAGCCACTGCCGCCGCCACTACCACCACTCACGAGGAA
ACCACGCCATCCCAGTTCGGGCCACCCCTCACGGGGATGGGGGCCCCTAC
TTCCCCGACCACTGCCGTGGTTAGCACCGCGATGCATGGGCTCACCGCCG
CAGAGGGGCAGGTGGCCTACCCGGCGTGGATGCCTTCGATGCTGCCTCAG
CAACAGCAGCAGCAGCAGCAGCAGCAACAGCAATCGCAAGACATTAGGGG
TGATGGGGGGACGGGTTCTACCGCTTCAGCAGCGGCAGGCGCATCGGCAG
CGGTGGCCGGAGGGCACGAAGGCGGAGACGTGGGAGGGGAGGGTGGGGAT
GGCAGTGCCTCTTCGAATCCCCCGTCTCTCTCACACTCTATTCTTGTAAC
CCCTATTCCGATTCGCCGCAGCAGGGACGAAGTCCTGGACGCCAGCATCG
AGTGCTTCTTCCCGGGGTGCCACACTAGACCATCCTACGGCATGAAGGGA
GACAAGAAGCCCTCCGTGTGCGTGGATCACCGTACCGACGGCATGGTCGG
TATCAAGTACACCCGGAGCCGCATCTGCGACTTCAACGACTGCCAAGAAT
ACCCCTCCTACAACTTCAAGGGCAAGAGGCGCCCCCGCCGGTGCGAGGCG
CACCTGCTGGACGGCATGGTGGACGTCAAGGCGCCCTGCTGCGATCACCC
CGGGTGCTCGACGCTGCCGTACTACGGGGAGGGAAAGGACAAGAAGCGGC
GCCGCTGCGCCCTGCACAGACTGCCGGGGATGGTGGACGTCAAGAGCCGG
CGGTGCGAGTTCGAGGGTTGCATAACCCAGCCGACGTACGGAGTGCAGGG
CGACGTCAAGGCGAAGCGGTGCGCCAAGCACAGGGACCAGGGCATGATCA
ACATCGTGCACAGGCACTGCGAGTTCCCGGGGTGCACGGTGCAGCCGTAC
TACGGGCTGGAGGGTAACCGCGGAGGGAGCCACTGCGCGGCGCACAAGCT
TCCCGGGATGGTGAAGACCAAGGGGCAGCGGTGCATCCACCCGGGGTGCT
CCACTCGCCCCAGCTACGGCAATGACGGGGACAAAAAGCCCAGCATGTGC
GGCAAGCATAAGCTGATGGGGATGGTGGACGTGATCAATCGGCGCTGCGA
AGAGCCCGGGTGCGTCACGCAGCCGACGCACGCCGTGGAGGGGAGCAACC
TGTCGACGCGGTGCGCGGTGCACCACCTGCCCGGGATGGTCAACATCAAG
TCCCGCCGGTGCGGCTTCGAGGGGTGCAACACGCAGCCGTACTACGGGAT
GCCTGGGGACAAGAGAGGGTCCCGGTGTTCTAAGCACAAGGAGAAGGACA
TGGTGGACGTGCACAACCGGCGATGCACCTTCGAAAACTGCCGGGTTTCG
GCGTCTTTCGGGATCAAGGAGGACGGGAAGGGGGCAACGCACTGCGCCAA
ACACAAGCTTCCGCACATGACCCCCCTCTACCGCAGAAAG
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