mRNA_P-littoralis_Contig144.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.50.1
Unique NamemRNA_P-littoralis_Contig144.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Match: A0A6S7L092_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7L092_PARCT)

HSP 1 Score: 176 bits (446), Expect = 5.520e-51
Identity = 78/166 (46.99%), Postives = 114/166 (68.67%), Query Frame = 1
Query:    1 VYDGHHRDHGLAYQAVMAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGPQMKVYGDAAYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*GFGKVTQLFPFCDFRKNQKLFLQPVGKH-INACVLTNAHTCLRGSQTGGYFDMMPPTLEEYFS 495
            ++ GH R H + +Q+V AP+G++++ +GP+ G RHDA++L VS +  +L  +Q P+G    +YGD AY +  ++   F+G +LT  QK FNK  SK+R+S+E GFGK+ Q F F DF+KNQK+ LQP+ K+ +   +L N HTCL GSQT  YFD+ PP+LE Y S
Sbjct:   96 MFSGHKRTHCIKFQSVHAPNGLILNMFGPIEGRRHDAFMLGVSGIMDKLRRIQQPNGEPYVIYGDPAYGVTDNILAPFRGVDLTVAQKEFNKRMSKVRVSVEWGFGKIAQYFAFLDFKKNQKILLQPIAKYYLVGSLLINCHTCLYGSQTSSYFDVQPPSLETYLS 261          
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Match: UPI00077A7035 (uncharacterized protein LOC107333236 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A7035)

HSP 1 Score: 176 bits (445), Expect = 2.250e-50
Identity = 81/166 (48.80%), Postives = 112/166 (67.47%), Query Frame = 1
Query:    1 VYDGHHRDHGLAYQAVMAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGPQMKVYGDAAYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*GFGKVTQLFPFCDFRKNQKLFLQPVGKH-INACVLTNAHTCLRGSQTGGYFDMMPPTLEEYFS 495
            +Y GH R H + +Q+V AP+G++   +GP+ G RHDA++L VS L  +L   Q P+G    +YGD AY L  ++   ++G  LTD Q+ FN   SK+R  +E GFGK++QLF F DF+KN K+ LQP+GK+ + A +L N HTCL GSQTG YF++ PPTLE Y S
Sbjct:  135 MYSGHKRTHCIKFQSVQAPNGLIAHMFGPIEGKRHDAFMLGVSGLADKLRRFQRPNGEPYVIYGDPAYGLSRNILAPYRGVRLTDDQQEFNSQMSKMRCCVEWGFGKISQLFAFLDFKKNLKVLLQPIGKYYLVAVILINCHTCLYGSQTGAYFNLDPPTLETYLS 300          
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Match: UPI00077A99CC (uncharacterized protein LOC107345875 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A99CC)

HSP 1 Score: 174 bits (440), Expect = 4.520e-50
Identity = 76/166 (45.78%), Postives = 114/166 (68.67%), Query Frame = 1
Query:    1 VYDGHHRDHGLAYQAVMAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGPQMKVYGDAAYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*GFGKVTQLFPFCDFRKNQKLFLQPVGKH-INACVLTNAHTCLRGSQTGGYFDMMPPTLEEYFS 495
            ++ GH R H + +Q++ AP+G++   +GP+ G RHDA++L +SDL P+L     P+G    +YGD AYP+  ++   F+G NLT  ++ FN+  SK+R+++E GFGK+ Q F + DF+KN K+ LQPVGK+ + A +L N HTCL GSQT  +F++ PPTLE Y S
Sbjct:   98 MFSGHKRTHCIKFQSIQAPNGLIAHMFGPIEGRRHDAFMLGMSDLLPKLQGFVQPNGQPYVIYGDPAYPITCNILAPFRGVNLTIQEQEFNRKMSKVRVNVEWGFGKICQNFAYLDFKKNLKVLLQPVGKYYLVATILINCHTCLYGSQTSSFFELEPPTLETYLS 263          
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Match: UPI000A2A66BF (protein ALP1-like isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A66BF)

HSP 1 Score: 176 bits (446), Expect = 1.820e-49
Identity = 81/166 (48.80%), Postives = 114/166 (68.67%), Query Frame = 1
Query:    1 VYDGHHRDHGLAYQAVMAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGPQMKVYGDAAYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*GFGKVTQLFPFCDFRKNQKLFLQPVGKH-INACVLTNAHTCLRGSQTGGYFDMMPPTLEEYFS 495
            +Y GH R H L +Q+V AP+G++   +GP+ G RHDA++L  S L  +L  +Q P+G    +YGD AY L  ++   F+G+ LT  Q+ FN+  SKLR+++E GFGK+ Q F F DF+KN K+ LQPVGK+ + A +LTN HTCL  SQTG YF++ PP+LE+Y S
Sbjct:  231 MYSGHKRVHCLKFQSVQAPNGLIAHLFGPIEGRRHDAFMLGESGLADKLRPLQRPNGEPYVIYGDPAYGLTRNILAPFRGAQLTHDQQEFNRRMSKLRVAVEWGFGKICQQFAFLDFKKNMKVLLQPVGKYYVVAALLTNCHTCLYNSQTGRYFELYPPSLEDYLS 396          
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Match: UPI00106B81BB (uncharacterized protein LOC114518718 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B81BB)

HSP 1 Score: 172 bits (435), Expect = 2.550e-49
Identity = 78/166 (46.99%), Postives = 113/166 (68.07%), Query Frame = 1
Query:    1 VYDGHHRDHGLAYQAVMAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGPQMKVYGDAAYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*GFGKVTQLFPFCDFRKNQKLFLQPVGKH-INACVLTNAHTCLRGSQTGGYFDMMPPTLEEYFS 495
            ++ GH R H + +Q+V AP+G++ + +GPV G RHDA++L VS+L  +L  ++ P+G    +YGD AY +  ++   F+G  LT  ++ FNK  SKLR+S+E GFGK+ Q F F DF+KNQK+ LQP+GK+ +   +LTN HTCL GS T  YF + PP+LE Y S
Sbjct:   98 MFSGHKRTHCIKFQSVHAPNGLIANMFGPVEGRRHDAFILGVSNLADKLCRIRQPNGEPYIIYGDPAYGVTDNILAPFRGVFLTADEQEFNKRMSKLRVSVEWGFGKIAQYFAFLDFKKNQKILLQPIGKYYLVGTLLTNCHTCLYGSLTSSYFGVQPPSLETYLS 263          
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Match: UPI00106C0330 (uncharacterized protein LOC114542457 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C0330)

HSP 1 Score: 169 bits (429), Expect = 2.310e-47
Identity = 78/166 (46.99%), Postives = 111/166 (66.87%), Query Frame = 1
Query:    1 VYDGHHRDHGLAYQAVMAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGPQMKVYGDAAYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*GFGKVTQLFPFCDFRKNQKLFLQPVGKH-INACVLTNAHTCLRGSQTGGYFDMMPPTLEEYFS 495
            +Y GH R H + +QAV AP+G++++ +GP+ G RHDA++L VS L  +L  ++ PDG    +YGD AY +   +   ++G+ LT  Q  FNK  SK+R+S+E GFGK+ Q F F DF+KNQK+ LQP+GK+ +   VL N HTCL GS T  +F + PP+LE Y S
Sbjct:  190 MYSGHKRVHCIKFQAVHAPNGLIVNWFGPIEGRRHDAFMLSVSGLTEKLQNIETPDGELYVLYGDPAYGINDCILAPYRGAQLTQNQSEFNKRMSKVRVSVEWGFGKLCQYFAFLDFKKNQKILLQPLGKYYLVGSVLINCHTCLYGSVTSSFFKVQPPSLETYLS 355          
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Match: A0A6P8HEE0_ACTTE (uncharacterized protein LOC116291725 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HEE0_ACTTE)

HSP 1 Score: 169 bits (428), Expect = 3.490e-47
Identity = 78/166 (46.99%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    1 VYDGHHRDHGLAYQAVMAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGPQMKVYGDAAYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*GFGKVTQLFPFCDFRKNQKLFLQPVGKH-INACVLTNAHTCLRGSQTGGYFDMMPPTLEEYFS 495
            +Y GH R H L +Q+V AP+G++   +GP+ G RHDA++L  S L  +L   Q P G    +YGD AY +  ++   F+G+ L   Q+ FN   SK+R+++E GFGK+TQLF F DF++N K+ LQP  K+ + ACVL N HTCL GSQT  +F + PPTLE Y S
Sbjct:  194 MYSGHKRTHCLKFQSVQAPNGLIAHMYGPIEGRRHDAFMLGESGLLNKLQRFQKPSGEPYVIYGDPAYGITQNIISPFRGARLPPDQQQFNSLMSKVRVTVEWGFGKITQLFAFLDFKRNLKVLLQPTAKYYLVACVLVNCHTCLYGSQTSKFFGLDPPTLERYLS 359          
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Match: A0A6S7J8K4_PARCT (DDE Tnp4 domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J8K4_PARCT)

HSP 1 Score: 167 bits (424), Expect = 8.860e-47
Identity = 73/166 (43.98%), Postives = 113/166 (68.07%), Query Frame = 1
Query:    1 VYDGHHRDHGLAYQAVMAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGPQMKVYGDAAYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*GFGKVTQLFPFCDFRKNQKLFLQPVG-KHINACVLTNAHTCLRGSQTGGYFDMMPPTLEEYFS 495
            +Y GH R H L +Q+V AP+G++ + +GP+ G RHDA++L +S L  +L  +  PDG    +YGD AY L  ++   ++G+NL+D QK FN+  S++R+++E GFGK++Q+F + DF+ N K+ LQP+G  ++   +LTN HTCL GS T  +F++ PP LE Y S
Sbjct:  174 MYSGHKRIHCLKFQSVQAPNGLIENMFGPIEGSRHDAFMLGISGLQEKLRQLTKPDGEPYVIYGDPAYGLSYNILAPYRGNNLSDAQKVFNRDMSRVRVNVEWGFGKISQIFAYLDFKTNLKVLLQPIGIYYLIGALLTNCHTCLYGSLTSSFFNLEPPVLETYLS 339          
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Match: G4YE34_PHYSP (DDE Tnp4 domain-containing protein n=4 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YE34_PHYSP)

HSP 1 Score: 167 bits (424), Expect = 9.540e-47
Identity = 85/167 (50.90%), Postives = 109/167 (65.27%), Query Frame = 1
Query:    1 VYDGHHRDHGLAYQAVMAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGP-QMKVYGDAAYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*GFGKVTQLFPFCDFRKNQKLFLQPVGKH-INACVLTNAHTCLRGSQTGGYFDMMPPTLEEYFS 495
            VY+GH R H L YQ VMAP G+ ID +G   G RHD++LLR S L  RL  V   DG     +YGD AYPL   +  GFKGSNL+D QKAFN A SK+R+++E GFG + +L+PF D R +Q+L+L PVGKH +   +LTN   C   +Q   +F + PP+LEEY S
Sbjct:  175 VYNGHKRKHALKYQGVMAPDGLFIDFYGRTVGRRHDSWLLRQSGLLKRLPRVLHHDGELPYCIYGDPAYPLKPTLHVGFKGSNLSDTQKAFNAAMSKVRVAVEWGFGGIIRLWPFLDLRLSQRLYLSPVGKHYLVGVLLTNFRNCTNPNQISKFFSIKPPSLEEYLS 341          
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Match: G4YGA1_PHYSP (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YGA1_PHYSP)

HSP 1 Score: 164 bits (415), Expect = 1.150e-46
Identity = 84/167 (50.30%), Postives = 108/167 (64.67%), Query Frame = 1
Query:    1 VYDGHHRDHGLAYQAVMAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGP-QMKVYGDAAYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*GFGKVTQLFPFCDFRKNQKLFLQPVGKH-INACVLTNAHTCLRGSQTGGYFDMMPPTLEEYFS 495
            VY+GH R H L YQ VMAP G+ ID +GP  G RHD++LLR S L  RL  V   DG     +YGD AYPL   +  GFKGSNL+D QKAFN A SK+R+++E GF  + +L+PF D R +Q+L+L PVGKH +   +LTN   C   +Q    F + PP+LEEY +
Sbjct:   63 VYNGHKRKHALKYQGVMAPDGLFIDFYGPTVGRRHDSWLLRQSGLLERLPRVLHHDGELPYCIYGDPAYPLKPTLHVGFKGSNLSDTQKAFNAAMSKVRVAVEWGFRGIIRLWPFPDLRLSQRLYLSPVGKHYLVGVLLTNFRNCSNPNQISKLFSIKPPSLEEYLT 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7L092_PARCT5.520e-5146.99DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]
UPI00077A70352.250e-5048.80uncharacterized protein LOC107333236 n=1 Tax=Acrop... [more]
UPI00077A99CC4.520e-5045.78uncharacterized protein LOC107345875 n=1 Tax=Acrop... [more]
UPI000A2A66BF1.820e-4948.80protein ALP1-like isoform X1 n=2 Tax=Exaiptasia di... [more]
UPI00106B81BB2.550e-4946.99uncharacterized protein LOC114518718 n=1 Tax=Dendr... [more]
UPI00106C03302.310e-4746.99uncharacterized protein LOC114542457 n=1 Tax=Dendr... [more]
A0A6P8HEE0_ACTTE3.490e-4746.99uncharacterized protein LOC116291725 n=1 Tax=Actin... [more]
A0A6S7J8K4_PARCT8.860e-4743.98DDE Tnp4 domain-containing protein n=2 Tax=Paramur... [more]
G4YE34_PHYSP9.540e-4750.90DDE Tnp4 domain-containing protein n=4 Tax=Phytoph... [more]
G4YGA1_PHYSP1.150e-4650.30DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:161073..161819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7668.SPU_016560-tr
PFAMsDDE_Tnp_4
Model size747
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.27e-16
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota,3A38W@33154|Opisthokonta,3BS4I@33208|Metazoa,3D9UV@33213|Bilateria
DescriptionDDE superfamily endonuclease
Cds size261
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.0847764-UTR-P-littoralis_Contig144:161072..1611201680789678.0847764-UTR-P-littoralis_Contig144:161072..161120Pylaiella littoralis U1_48UTRP-littoralis_Contig144 161073..161120 +
1680789678.109876-UTR-P-littoralis_Contig144:161381..1618191680789678.109876-UTR-P-littoralis_Contig144:161381..161819Pylaiella littoralis U1_48UTRP-littoralis_Contig144 161382..161819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.0978394-CDS-P-littoralis_Contig144:161120..1613811680789678.0978394-CDS-P-littoralis_Contig144:161120..161381Pylaiella littoralis U1_48CDSP-littoralis_Contig144 161121..161381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.50.1prot_P-littoralis_Contig144.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 161121..161381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.50.1

>prot_P-littoralis_Contig144.50.1 ID=prot_P-littoralis_Contig144.50.1|Name=mRNA_P-littoralis_Contig144.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MAPHGMLIDAWGPVRGCRHDAYLLRVSDLNPRLAAVQDPDGPQMKVYGDA
AYPLLSHVRRGFKGSNLTDPQKAFNKANSKLRISIE*
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mRNA from alignment at P-littoralis_Contig144:161073..161819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.50.1 ID=mRNA_P-littoralis_Contig144.50.1|Name=mRNA_P-littoralis_Contig144.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=747bp|location=Sequence derived from alignment at P-littoralis_Contig144:161073..161819+ (Pylaiella littoralis U1_48)
GTGTACGATGGACACCACCGTGATCACGGGCTGGCATATCAGGCGGTCAT GGCCCCCCATGGGATGCTCATCGATGCCTGGGGCCCAGTGCGCGGGTGCC GGCACGACGCGTACCTCCTACGCGTGAGCGACCTGAACCCTCGCCTTGCA GCCGTTCAGGACCCGGACGGGCCACAGATGAAGGTGTACGGGGACGCTGC GTACCCGCTGCTTAGCCACGTGCGCCGGGGGTTCAAGGGGTCTAACTTGA CGGACCCGCAAAAAGCCTTCAACAAGGCAAACAGCAAGTTGAGGATTTCC ATTGAGTGAGGATTCGGTAAAGTCACGCAGTTGTTTCCGTTCTGCGACTT TCGGAAGAACCAGAAATTGTTCTTGCAGCCGGTAGGGAAACACATCAACG CTTGTGTCCTGACGAACGCACACACTTGCCTGCGCGGTTCTCAGACGGGG GGCTACTTTGACATGATGCCCCCCACGCTCGAGGAGTACTTCTCTTGGGT AGATGTTGTCCGAAGAACATGTCGCCGTCGAGAGCGTGGTTTAAGATTGG CATGACGTACGGTGGTGTCGGCGTTATGTGGCGCAAAGCGAAGCGTAGGC GACGACCATACGCGTTTTGTCATGACAGGGGTGTATCGTGAGCGGGTGTT GCTCCTGTTAGAAGGGCGGAGGCAGGGAGGACTGCGCAGTTGTCCCTGTT ATTGTGACAGCAATTGTGTGAAGCGAACAATGTTTGTCCTGGGCCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:161073..161819+

>mRNA_P-littoralis_Contig144.50.1 ID=mRNA_P-littoralis_Contig144.50.1|Name=mRNA_P-littoralis_Contig144.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig144:161073..161819+ (Pylaiella littoralis U1_48)
ATGGCCCCCCATGGGATGCTCATCGATGCCTGGGGCCCAGTGCGCGGGTG
CCGGCACGACGCGTACCTCCTACGCGTGAGCGACCTGAACCCTCGCCTTG
CAGCCGTTCAGGACCCGGACGGGCCACAGATGAAGGTGTACGGGGACGCT
GCGTACCCGCTGCTTAGCCACGTGCGCCGGGGGTTCAAGGGGTCTAACTT
GACGGACCCGCAAAAAGCCTTCAACAAGGCAAACAGCAAGTTGAGGATTT
CCATTGAGTGA
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