mRNA_P-littoralis_Contig144.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.49.1
Unique NamemRNA_P-littoralis_Contig144.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig144.49.1 vs. uniprot
Match: A0A6H5J8N3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8N3_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.520e-24
Identity = 56/109 (51.38%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:  253 TEATKNPELLLDDATE-ASVGDNAGEKEAAYMEIFMLHSACEREELLSVRHVERPLVISLTRTIASIDKCDAYHKYRVLKADMPRLRRPLGFPEWVTLANGSVFTGEEA 576
            +EA K+PE+LL+   E A+ G++  E EA +++  ML++  EREELL  R V R  V  +TR I S+D CDAYH YR LK DMPRL    GFP  + L NG VF GEEA
Sbjct:   41 SEAVKHPEMLLEYGEEGAADGESEAENEARFIDFEMLYAMMEREELLRPRQVHRAPVDHVTRIIDSVDDCDAYHNYRTLKKDMPRLMEAFGFPNLIGLENGCVFRGEEA 149
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BLAST of mRNA_P-littoralis_Contig144.49.1 vs. uniprot
Match: D7FZX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX9_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.200e-16
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:  123 GGRGCYRTIISGREAQIHPSSSLWTRNPPAKCVVFTELPSTSRD 254
            G RGCYRT++ GREAQIHPSSSLW RNPPAKCVVFTEL STSRD
Sbjct:  971 GSRGCYRTVLGGREAQIHPSSSLWRRNPPAKCVVFTELLSTSRD 1014
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BLAST of mRNA_P-littoralis_Contig144.49.1 vs. uniprot
Match: A0A7S2WBF3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WBF3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.910e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 3 
Query:  129 RGCYRTIISGREAQIHPSSSLWTRNPPAKCVVFTELPSTSR 251
            RG Y+TI+ G+   IHP+S+++ RNPP KCVV+TEL  T R
Sbjct:  206 RGKYKTIVGGKHVSIHPTSTMFGRNPPPKCVVYTELLVTKR 246
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BLAST of mRNA_P-littoralis_Contig144.49.1 vs. uniprot
Match: A0A6H5KK75_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK75_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 6.250e-6
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:  286 DDATEASVGD--NAGEKEAAYMEIFMLHSACEREELLSVRHVERPLVISLTRTIASIDKCDAYH 471
            DD   AS  D  +A + EA    + ML +A EREELL VR V+R  V+ L+RTI S+D CDAYH
Sbjct:   78 DDGDAASGIDLRSAAQAEAEVTGLGMLQAAWEREELLRVRPVDRAPVMRLSRTIDSVDDCDAYH 141
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BLAST of mRNA_P-littoralis_Contig144.49.1 vs. uniprot
Match: A0A7S1D3I8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D3I8_CYCTE)

HSP 1 Score: 52.0 bits (123), Expect = 2.480e-5
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  138 YRTIISGREAQIHPSSSLWTRNPPAKCVVFTELPSTSR 251
            Y+T + GRE  IHP+S+L+ RNP  KCVV+TEL +T +
Sbjct:   57 YKTKVGGREVSIHPTSTLFGRNPAPKCVVYTELLTTKK 94
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BLAST of mRNA_P-littoralis_Contig144.49.1 vs. uniprot
Match: A0A6H5KTN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN0_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.870e-5
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:  286 DDATEASVGD--NAGEKEAAYMEIFMLHSACEREELLSVRHVERPLVISLTRTIASIDKCDAYH 471
            DD   AS  D  +A ++EA   E+ ML +A EREELL V  V+R  V+ L+RTI S+D CDAYH
Sbjct:   33 DDGDAASGIDLRSAAQEEAEVTELGMLQAAWEREELLRVP-VDRAPVMRLSRTIDSVDDCDAYH 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5J8N3_9PHAE2.520e-2451.38DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FZX9_ECTSI3.200e-1686.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WBF3_9STRA2.910e-656.10Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6H5KK75_9PHAE6.250e-651.56Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A7S1D3I8_CYCTE2.480e-555.26Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A6H5KTN0_9PHAE3.870e-551.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:152480..155816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZX9
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,PCI,Ribosomal_L35Ae
Model size578
Max annot lvl2759|Eukaryota
KEGG koko:K12818,ko:K13117
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.34e-12
EggNOG OGsCOG1643@1|root,KOG0922@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size576
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.020521-CDS-P-littoralis_Contig144:152479..1525031680789678.020521-CDS-P-littoralis_Contig144:152479..152503Pylaiella littoralis U1_48CDSP-littoralis_Contig144 152480..152503 +
1680789678.0339222-CDS-P-littoralis_Contig144:152788..1529241680789678.0339222-CDS-P-littoralis_Contig144:152788..152924Pylaiella littoralis U1_48CDSP-littoralis_Contig144 152789..152924 +
1680789678.0431335-CDS-P-littoralis_Contig144:153487..1535811680789678.0431335-CDS-P-littoralis_Contig144:153487..153581Pylaiella littoralis U1_48CDSP-littoralis_Contig144 153488..153581 +
1680789678.0529945-CDS-P-littoralis_Contig144:155494..1558161680789678.0529945-CDS-P-littoralis_Contig144:155494..155816Pylaiella littoralis U1_48CDSP-littoralis_Contig144 155495..155816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.49.1prot_P-littoralis_Contig144.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 152480..155816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.49.1

>prot_P-littoralis_Contig144.49.1 ID=prot_P-littoralis_Contig144.49.1|Name=mRNA_P-littoralis_Contig144.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=192bp
ERLRIDPEESCGAEMSHYLRCSVAGLFTNVALRQPSTREGKEAAVATVLS
SVAERRRSTLRRHYGQGTRLRSASCSRSCRRLAETEATKNPELLLDDATE
ASVGDNAGEKEAAYMEIFMLHSACEREELLSVRHVERPLVISLTRTIASI
DKCDAYHKYRVLKADMPRLRRPLGFPEWVTLANGSVFTGEEA
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mRNA from alignment at P-littoralis_Contig144:152480..155816+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.49.1 ID=mRNA_P-littoralis_Contig144.49.1|Name=mRNA_P-littoralis_Contig144.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3337bp|location=Sequence derived from alignment at P-littoralis_Contig144:152480..155816+ (Pylaiella littoralis U1_48)
GAGCGACTGAGGATCGACCCTGAGGTACACACGCACGGCAATATTTATTC
TCGCCTTCTTTTTGGGCGCTTCTTATCCAAGCCTGGCTGTCGCGCACGCT
CTTTCACGACGTGCTCCCCTCTTCGTTCGTGTTCATGCGGCATCTACGTG
CGCGGGTTTTGGTTTTCTCTGCATGAGCTGCCATGTGTCTCGCTTTTCGC
AACGCGCTACATACTCGTAGCTTTCATCGCCACCGCGAGTTATGTCCTCG
TCCCCCCTTGTACCCACGTTGCACCATCCCCCCTCCCGCTGTATCTCGGC
TCTGCGTAGGAGTCTTGTGGGGCGGAGATGTCCCATTACCTCCGCTGCTC
GGTGGCTGGGCTGTTCACGAACGTGGCCTTAAGGCAGCCGTCGACAAGAG
AAGGAAAGGAGGCCGCGGTTGCTACCGTACTATCATCAGTGGCAGGCAAG
TCTCTGAGTATGGCTAGCCCTCGAAGGGTGCGTGTCATATCTGGTGGGGT
ACTCTGTGTGTTGCAATGGTCGTCAACGCCACGTAGGTGGTCTTGAGATC
AAGAGGGAGCGGCTTGTGCGCGTGCTTTGGCCAAAATATCGTTTTTTTTC
TGTTTTGATATTTGTAAGCGTTACCTACACGGGGTCAAGAGGTGTTGGTT
GGACGGCTGGAGGTACCTCCACAGGGAGGGAGTTCCGCTCTCATATTGCA
CGGGCTAAGTGGCACTTTGCGGGGTGATCCAAGGGTACGCGCGAATTGCG
TGGTGTTGGAGGGCGGTGGATTGGTTCGAACCGGCAGTAAGTAGAGCATT
CCCGGTCTAGAGGAGGGGAGAATATCTCTCCTGCGCGTCATCACTGCAGG
CGCGACATCACTAGATTGCAAAACTCAACGGCGGTTTATCGCAAACGCTC
CCTTGAAGCGGACGACTGTGTTCGACCACCCTTTTGGGTCATTCTGCCGT
ATTTTTGAACACCGAGGCTGATTCCGTTTCCCACCCACCGTGGCGTTTTC
TTGCGCAGAGAGGCGCAGATCCACCCTTCGTCGTCACTATGGACAAGGAA
CCCGCCTGCGAAGTGCGTCGTGTTCACGGAGCTGCCGTCGACTAGCCGAG
ACGTGAGTCAGACACTCCCCCATGTTTCCCCCTCTTATACACACCAGTAT
CTGTTGATGTCACTTCATGGAGTCGCAGAAACACCCGGAACCGTGTGGGC
GTTAAGCTGCACGAAGCAGTACAGGGGCGTAGGACCACGCCACGTTCCTG
GCACGACGCTCGTTCACACAATGGAATTTGCTGTTTGGCCGTTTTATCGA
GGTTCAACCACTGCCGCTTTGGCTACTGTGACCATTTGCCGATGTTCTGG
CGCTTGGCCTTACGCTTTTGTACCCCGGTAGCGCGATCTCGTGACACGTT
TTTGTTTCCTATTTCAAATATTATTGCATCGTATCGTATCGTTTTATCGT
TTTATCGTTATCGTCATCGTAGTATCGAATGTTATTCGGTACGATTACGA
TACGATCGGGTCGATACGATATATCGTCTGAAATGATACGATATCCATCA
ATAGCTTGTGTGCCCCGGTAGCGCGACCTCGGGACCCGGTCGCCGTAAAC
GTCGCTGGTACAACATATGCAGCGACATGGAATAACCAAGTCCAAAATGT
ATCTACATGTAAGAAGTTCTCTTGAGAACATTGAGTGGAGAAGTGGTGCC
CTGCTGTAGACGAAACTTGCTCAGTACTGAAAGTGACTGCTGTGGGTCGG
TCCAATTGCAAGGAGTTGCGCGGCAGCCACGGCAGCCACGTCTGCCCAGA
AAGCTACGGCACTGTAGGCGGAACCCTTCTCCTGACGGCAATTTGAAAAG
CCCCGCGTGCCTGGTATCGACAGCACGTTACACGTATGCATCCACACCCG
GCAGAGACTCCCATTTATCAAACTGAAGATCCCTCATGACTCCAGGAGGG
GGGCCGGTTTGAATAGCCATAAAACGGACGTCGCAACGAATTTGCGCCCT
GGTTCGCCGGGGGAAACACCAGCGCGCGTCTGAAAAAAAAAACGTCGCAA
ATGCAACGCGTCCCGTCTTGCCCTGTAAACCAAAATAGAGAGTTAAAACC
CCGTCCCGCGTTGGAAACAAATAAACGCCACGACACGGCCCTAAAGAAAC
AACGAACTACTCCCACTGAACAAAAAACATCACGCTCCGTCCTGCCCCGC
GTCGAGAAAAAAAAAACTCCTGGCTTGTCTTCGAAAATACAATAACAGCC
CGTTTTAGTTGGTTCGAGGCGTAAAGCAGAGCATCGGCAAAAAAAACATG
TGTTTCGTCTGCCCCGAGTCGAAACAAAAAATTGCCCCGTCTCGTCTTCG
AAAAAAACAAAATGGCCCGTCCTGGCTACAAGAAGTCTGGTTTGAACAGT
GGAGAAATTTTTTCGAGTGAAAGCGTTGTTCCGCAATTTCTCTGAAGCTC
ATCATGTCTCCGCCAGGAAAACACGTACTACTGTACACACAAGACTTCAA
GACAACGACGCATGATGTACATGTACGAACTCATTGCTCCGAAATGCACG
CCAAAAACGTAACGACACGCAAAGAAAGATGAAGCATGGGTCGGAACTAT
TAGGGTGTTTGCGTAGACCTGACTCGACTAAGATTTCGCTCAGATTTGGT
CTTTTTTGTTCCCCCGAAGGCCAAACCTGAGTGGATCTTTAACATTTTGG
TCTTTCGCTCAGCCGAATTGCTCCCAAAGACCAGAGAAAAAGACCGATTT
GGTCTTGCTCCACTATGGTTTGGCTTTGGTCTTTCGGACTATCTCCTTAT
TGGACAGAGCCCCCCCGAACGGACACACCACCAACACACGCAGAGTTTGG
GGCAGTGGTGCGGTAGGTCACACCAACCACCATGGCGAATCGGCCGCAGT
ACCGGAAGACCGTGAGGCAGACATCTCTCCACAAGAGACCTGGCGCTCTG
CACGCGGTAGACATGGTGCAGCTGAGCGAGCTGAACACAAGCATCCCTTT
TTTCATGCTGTTTAGTGAGGCGACGAAGAACCCGGAATTACTCCTCGACG
ATGCGACGGAGGCCTCGGTTGGAGACAACGCGGGaGAGAAAGAGGCCGCT
TATATGGAGATTTTCATGCTGCACTCGGCGTGCGAGAGAGAAGAGCTGCT
TAGCGTGAGGCATGTCGAGCGACCGCTGGTAATATCTTTGACGAGGACCA
TCGCTTCCATCGACAAGTGCGACGCTTACCACAAATATCGCGTTCTGAAG
GCGGACATGCCTCGCCTACGGAGACCACTCGGCTTCCCGGAATGGGTCAC
CCTCGCCAACGGGTCGGTGTTCACTGGAGAGGAAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:152480..155816+

>mRNA_P-littoralis_Contig144.49.1 ID=mRNA_P-littoralis_Contig144.49.1|Name=mRNA_P-littoralis_Contig144.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=576bp|location=Sequence derived from alignment at P-littoralis_Contig144:152480..155816+ (Pylaiella littoralis U1_48)
GAGCGACTGAGGATCGACCCTGAGGAGTCTTGTGGGGCGGAGATGTCCCA
TTACCTCCGCTGCTCGGTGGCTGGGCTGTTCACGAACGTGGCCTTAAGGC
AGCCGTCGACAAGAGAAGGAAAGGAGGCCGCGGTTGCTACCGTACTATCA
TCAGTGGCAGAGAGGCGCAGATCCACCCTTCGTCGTCACTATGGACAAGG
AACCCGCCTGCGAAGTGCGTCGTGTTCACGGAGCTGCCGTCGACTAGCCG
AGACTGAGGCGACGAAGAACCCGGAATTACTCCTCGACGATGCGACGGAG
GCCTCGGTTGGAGACAACGCGGGaGAGAAAGAGGCCGCTTATATGGAGAT
TTTCATGCTGCACTCGGCGTGCGAGAGAGAAGAGCTGCTTAGCGTGAGGC
ATGTCGAGCGACCGCTGGTAATATCTTTGACGAGGACCATCGCTTCCATC
GACAAGTGCGACGCTTACCACAAATATCGCGTTCTGAAGGCGGACATGCC
TCGCCTACGGAGACCACTCGGCTTCCCGGAATGGGTCACCCTCGCCAACG
GGTCGGTGTTCACTGGAGAGGAAGCC
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