mRNA_P-littoralis_Contig144.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.29.1
Unique NamemRNA_P-littoralis_Contig144.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig144.29.1 vs. uniprot
Match: A0A6H5L1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.820e-19
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 3 
Query: 1164 MHEAQQVATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLDHSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFM 1433
            M   Q+ A + D+ + + ELLRL  LD SL  ERKF+A L+ G+ H++   Q   A +W H K+MSSSEEGQQVDRA ++KELS ++KF+
Sbjct:    1 MQMQQKAAILHDVSSMLAELLRLPMLDGSLSTERKFVATLDEGVKHALQGKQYDAAGMWLHGKLMSSSEEGQQVDRALLIKELSGVAKFI 90
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BLAST of mRNA_P-littoralis_Contig144.29.1 vs. uniprot
Match: A0A6H5K7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7C0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.830e-14
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 3 
Query: 1104 FKASWGTLLHKAPMCLQIPTMHEAQQVATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLDHSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFM 1433
            FKA+W TLL    +   I       +   I +I+  + EL R+  LD+SL EE+ F+ +   GL+ ++ + Q+   AVW HDK+MS++EEGQ+ DR +IVKELS ISKF+
Sbjct:  108 FKATWSTLL---TLISGITAFGRHDKHNRIQEIQRVLAELERVLALDTSLVEEKVFVHNRVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDRDQIVKELSSISKFL 214
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BLAST of mRNA_P-littoralis_Contig144.29.1 vs. uniprot
Match: A0A6H5JHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.140e-13
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 3 
Query: 1182 VATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLDHSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFM 1433
            + +  +I+  + EL RL  LD+SL EE+ F+ +L  GL+ ++ + Q+   AVW HDK+MS++EEGQ+ DR + VKELS ISKF+
Sbjct:   78 IYSFREIQRVLAELERLLALDTSLVEEKVFVHNLVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDRDQKVKELSSISKFL 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1T2_9PHAE2.820e-1950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7C0_9PHAE1.830e-1442.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHN8_9PHAE4.140e-1346.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:86092..89297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FPB8
PFAMsCAP_GLY,CRAL_TRIO
Model size1436
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.58e-11
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Descriptionmacromolecule localization
Cds size1038
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.7165935-UTR-P-littoralis_Contig144:86091..864891680789677.7165935-UTR-P-littoralis_Contig144:86091..86489Pylaiella littoralis U1_48UTRP-littoralis_Contig144 86092..86489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.727509-CDS-P-littoralis_Contig144:86489..871941680789677.727509-CDS-P-littoralis_Contig144:86489..87194Pylaiella littoralis U1_48CDSP-littoralis_Contig144 86490..87194 +
1680789677.7374187-CDS-P-littoralis_Contig144:88964..892971680789677.7374187-CDS-P-littoralis_Contig144:88964..89297Pylaiella littoralis U1_48CDSP-littoralis_Contig144 88965..89297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.29.1prot_P-littoralis_Contig144.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 86490..89297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.29.1

>prot_P-littoralis_Contig144.29.1 ID=prot_P-littoralis_Contig144.29.1|Name=mRNA_P-littoralis_Contig144.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=346bp
MSVLAIDMAAATAPPSMDAITQLCTETDAQNVSVWMPAKIAMGAGPRSAA
DLDLEDVVASVVQLAGAGDAPDPPKVFTIGMNARGEGGSVATVELRQKRA
LCQSLVEYLWRCTGNGGLKIGSGFLILPSAFPPIPPVSSGVGGGAAGPGL
PPQAPGLGGAAGGPSDPAEVGSADGGGSAAAPGSRKRTLAELHAAVDELS
ERQSLADGLGQPAERDAVATPPARRPMTYVSIPDKFKASWGTLLHKAPMC
LQIPTMHEAQQVATIADIRATVTELLRLAQLDSSLDEERKFMADLEAGLD
HSMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVKELSHISKFMG
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mRNA from alignment at P-littoralis_Contig144:86092..89297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.29.1 ID=mRNA_P-littoralis_Contig144.29.1|Name=mRNA_P-littoralis_Contig144.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3206bp|location=Sequence derived from alignment at P-littoralis_Contig144:86092..89297+ (Pylaiella littoralis U1_48)
GTATTATGAAAAGCGGAGATAGGGAATGGCGCAGTCGGTCCCAATCCTGT
CATGCAATAAAGATCCGTTATGCCAGCAGTCAGGGTCATCTCTCACTTTT
TAATTTGCAACCTGTCTTGCAAGGAGAAACAGAGAGAAAAGAAGTGATCT
GTTGAGACCGCTCAGGCGTCAGCGCGCCCGCCCCGCTCCTACCGTCTCGT
GGCTTTGCCGCGGTGTGCGTTTTCCGGTGGTGCTCTCTCCCTCCGTGCTG
ATTGCTGGCTGCGGTCTGGCTTGTTGGTCTTCGCTACAGGGGGCTCTCGA
CCTCCCCCCTTTTTTCTGCCTCTCAGGATCCGCCTTTCTTTTCTGTTCTT
GGTTTCTAGCCTCTCGTGTCTCTCGCATCCACCTGCCGTCCTTCCGGAAT
GAGTGTCCTCGCCATCGACATGGCGGCCGCCACTGCGCCTCCCAGCATGG
ATGCCATCACCCAGCTGTGCACAGAGACGGACGCGCAGAACGTGTCGGTT
TGGATGCCGGCTAAAATCGCGATGGGTGCTGGGCCGCGATCTGCAGCGGA
TCTCGATCTCGAGGATGTCGTTGCCTCCGTCGTGCAACTTGCTGGAGCAG
GCGACGCACCAGACCCGCCGAAGGTCTTCACCATCGGCATGAACGCCCGT
GGCGAGGGCGGCTCCGTCGCCACCGTCGAGCTCCGCCAGAAGCGGGCGCT
CTGCCAGTCGCTGGTGGAGTACCTGTGGCGATGCACGGGGAACGGCGGAC
TGAAGATCGGATCCGGTTTTCTTATCCTACCGTCGGCCTTTCCGCCGATC
CCGCCCGTGTCTTCGGGCGTTGGAGGGGGTGCAGCAGGACCGGGCCTTCC
GCCTCAGGCGCCAGGGTTAGGGGGAGCTGCTGGAGGGCCAAGTGATCCAG
CGGAAGTTGGGAGCGCCGATGGTGGCGGTTCGGCGGCAGCCCCGGGCTCC
CGTAAACGCACCTTGGCCGAACTTCACGCTGCCGTCGACGAATTATCTGA
GCGGCAGAGCCTGGCGGACGGACTTGGGCAACCAGCGGAACGAGATGCGG
TGGCCACGCCCCCCGCCCGGCGTCCCATGACCTACGTCTCAATTCCCGAT
AAGGTGAGATTATACGTGTGTTTGGCTTTGTGTATCCGGACGACCCACTC
CACTATCGCTCGCTCCTTCGTCCCTCCCTCTCTGCTCTGCTCCCTCTCTT
CGGTTACGTTCACCCTCACCTCTTTCTGTTATGCTCTGTTCGGGTACCGA
AAGAAGCAGAGCTCTGGGATGTTCTGAGTTATCTGCAAGACCTGTTTTTC
TGGTCTGTTTTTCAGTACTGCTGTTTGGTAGCTTCCTCAAGTTGGCTCTG
TGGGTCGTTCGGTTGGCTCTCGTCTCCGTGTTTTTACACCATATTTCGTA
CGGAGTGTGATGCAACCATACATCATCCTTTTCCCTTTGTGCATGCCCGT
CCAAAGGTCATGCTTGTGCCAGTCTACACCGTGCAGGTTAGGTCATACTT
CGAAATATATATGTACAGCAGACCTGCGTATCAGCACTTTTATTTATTTT
TACTTTCTCTTCTTTATTCTCTTTGTGGTTGAGGAAAATACAGCGGACAT
GTGCGTCTCGGAACATTTTCGCAGCCATCTCTTTGCCCACATTCTGCAGG
TTATGACTGTTTTTATGCGTGTTTTTGTCCACTGGTGCTCTTGTTTTTGG
GGATTGTTGACGTGACATCGCTCGCAGGTCGCACGGCCTTTGACCCTTTT
TCTGTGGTAATGTCTTCTTTGACAGCTATCTCCCTCTTCGCATAGTTTCG
CGCTGTTGCCAGACCTCGCCACCTAAAATCATCCTTTAAATAACGATGAA
CCTCTCTGTCTGTTTCTGTCTTGGACAAAGGTATTTGCTTTCGCCAAGCT
CTGCATTTTTCCTCCTTCCGTGCTCCGGTTGAATTTTTTGACTCTGCCTT
TCCAACTCTCTCTTTCCAACCCGCGAGTTTTTCTCATTTCCTCTGCGAGT
TTACCCGTTCCGGCTCAGTTCTGTTTAGTTACACGCTCGCCCACTCCAGC
TTTGGTTTTCGATTTGCTTTTCCTGTTTCCCGTTCCGGCTCAGTTATGTT
CAGTTACACGTTCACCCGCCCCAGCCCCGTTTCAGCCTGTTGCTCATGGC
TTGGTTTTTCTTCTTTCAGTTCCTGTTCCACCGTTCACGCTCAGTTTCGG
TTTTTCGCTCTCGGCTCGAGGTCCCGTTTGCTCCAGTTCCGTTTTCAGCC
TATTGCTCACGGCTTGGTTCCCGTTCCGTTCACGCTCAGCCGTTCCAGTT
CAGTTTAAGCCTTGTGCTCTTGGCTCGTTGCCTCTTTTGCTCCAGTGCCG
TTTTTCGGCTTGTCGCTCACAGCTTGGTTCCCTGTCAGTACACGCTCAGT
TTCGGCTTGTCGCTCTAGCCTGATTTTTTCCCGTTCAGTTCCCGCTCCAC
GAACACAGTTTCGACCTTTCGCTCTAGTTCAATTTTCGGCCTGTCGTTCA
CGGCTTGAGTCCCCGCTCAGTACACGGTCATTTGCGGCCCGTCGCTCAGG
GCTTAGCTATTTTACGTTCCATTAATGCTAACCACTTTCACGCTCAGTTC
GGCCTTTCGCCTTTGGTTCGATGCCCCATTTACTCCAGCTTCGTTTTCGG
CCTGTTTTCTCACGGCTTGGTTCCCGGTTTCAGTTCCCGCGATGCCCGTT
CACGCTCGTTTCGGCTCAGTTCGCGCTCACAATTCTTCGCTCAGTTGACG
CTCACCCGCTCCGGTTCAGTTCGAGATTGTTCGCTCATTGCCGACCTTTG
CATGGCGGCCCCTCTTTCTTTCCGTTCCCATGCCCATTACTTTGACCGTC
TTTCCGGTTCTGCTCCGCTTTAGTTCAAAGCTTCGTGGGGTACCCTTCTG
CACAAGGCCCCAATGTGTTTGCAGATCCCTACTATGCATGAAGCCCAGCA
AGTGGCCACTATCGCCGACATTCGCGCAACGGTGACCGAATTGTTGCGGT
TGGCTCAGCTAGACTCTTCGCTGGACGAGGAACGCAAGTTCATGGCGGAC
TTGGAAGCAGGGTTAGACCATAGTATGATGACCGGCCAGTTAGGCATCGC
GGCCGTCTGGTTTCACGATAAAATGATGAGTTCCTCGGAGGAAGGGCAAC
AAGTAGACCGTGCTAGAATCGTGAAAGAATTGTCGCACATCTCCAAGTTC
ATGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:86092..89297+

>mRNA_P-littoralis_Contig144.29.1 ID=mRNA_P-littoralis_Contig144.29.1|Name=mRNA_P-littoralis_Contig144.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1038bp|location=Sequence derived from alignment at P-littoralis_Contig144:86092..89297+ (Pylaiella littoralis U1_48)
ATGAGTGTCCTCGCCATCGACATGGCGGCCGCCACTGCGCCTCCCAGCAT
GGATGCCATCACCCAGCTGTGCACAGAGACGGACGCGCAGAACGTGTCGG
TTTGGATGCCGGCTAAAATCGCGATGGGTGCTGGGCCGCGATCTGCAGCG
GATCTCGATCTCGAGGATGTCGTTGCCTCCGTCGTGCAACTTGCTGGAGC
AGGCGACGCACCAGACCCGCCGAAGGTCTTCACCATCGGCATGAACGCCC
GTGGCGAGGGCGGCTCCGTCGCCACCGTCGAGCTCCGCCAGAAGCGGGCG
CTCTGCCAGTCGCTGGTGGAGTACCTGTGGCGATGCACGGGGAACGGCGG
ACTGAAGATCGGATCCGGTTTTCTTATCCTACCGTCGGCCTTTCCGCCGA
TCCCGCCCGTGTCTTCGGGCGTTGGAGGGGGTGCAGCAGGACCGGGCCTT
CCGCCTCAGGCGCCAGGGTTAGGGGGAGCTGCTGGAGGGCCAAGTGATCC
AGCGGAAGTTGGGAGCGCCGATGGTGGCGGTTCGGCGGCAGCCCCGGGCT
CCCGTAAACGCACCTTGGCCGAACTTCACGCTGCCGTCGACGAATTATCT
GAGCGGCAGAGCCTGGCGGACGGACTTGGGCAACCAGCGGAACGAGATGC
GGTGGCCACGCCCCCCGCCCGGCGTCCCATGACCTACGTCTCAATTCCCG
ATAAGTTCAAAGCTTCGTGGGGTACCCTTCTGCACAAGGCCCCAATGTGT
TTGCAGATCCCTACTATGCATGAAGCCCAGCAAGTGGCCACTATCGCCGA
CATTCGCGCAACGGTGACCGAATTGTTGCGGTTGGCTCAGCTAGACTCTT
CGCTGGACGAGGAACGCAAGTTCATGGCGGACTTGGAAGCAGGGTTAGAC
CATAGTATGATGACCGGCCAGTTAGGCATCGCGGCCGTCTGGTTTCACGA
TAAAATGATGAGTTCCTCGGAGGAAGGGCAACAAGTAGACCGTGCTAGAA
TCGTGAAAGAATTGTCGCACATCTCCAAGTTCATGGGC
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