mRNA_P-littoralis_Contig144.3.6 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.3.6
Unique NamemRNA_P-littoralis_Contig144.3.6
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 754 bits (1947), Expect = 2.350e-252
Identity = 414/674 (61.42%), Postives = 491/674 (72.85%), Query Frame = 3
Query:   81 NMSDAAAEAARVALTMGSTVVDVVSFMGDLGEELPVIKPVLKTLKVIREKVETVKKNREDLGSLEGRCTYLTACVIVKCRQQPSSGVDVTPLVDCVEDARKVVERCGSRRHQVSNFMKASSDKGEIAGLNARVDRLTGDLGLAGIAVLNGKVDGMKAMLVSCTTQAVTGCYVLANLDIVMTSVPKPPPKVATVPKGTPALKSWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFVRSPQALETFADGIVWLSVNQGAKERLPSLMLQLARMVHEDIGGSMGRCPVAADDGAAYIKERMVNGHGGKGLKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGLILRSSGKAVGVDYLSKTDAESVL-RTAELPPGVRLPDHAVDLIELCGRVAMDLAFVGRWSTVRGRHDQAAWSHAAQKIREEIVNVCGDSFSGNVADARKKRREAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYDEMPSLEDETSVCVVVDVLERWSVVSLVEGKFNMHDAHSSFAREGLMDRGDVRRRAVKQWVKYISSLEALRAVDAYDLKSLWLAVERVGGDGWWKTRPYVKALGAMDESDPSLCRKTIEAVGDFQEVQKYWADEAERLLRRCLAIKESKLGPEDVAVAHTLYELGVCAREAGRPE 2099
            ++SD+AAEAAR+AL +GST+ D VS   DLGEELPVIKPV KTLK IR  VETVK NRE+L +LE RCTY+TAC +VKCR   S  VDV PL DCVE A+   ERC SRR +VS  +KA SDK EIAGLN+ VDRLT DLGLAGIAVL GKVD MK  L                +D  + S+P+   K+A VP G P  KSWHV+RR  M  VL+AL G     +  L G SGSGKTTVAAE VRS +  E F+DGIVWL VN+GAK+RLPSLMLQLARMVHE+IGGS+GR P A++D A YIK+R+  GH G+ LKCLVVADNVW+++VVSKL+ETGM VLLSTRDE ++ RS GKAV VD LS+ DAESVL R AELP   RLPD AVDLI+LCGRVAMD+AFVGRWSTVRGRHD A+WS AA  IR E+  V  D  + +  +   KRR+A+L  GF+DLAIGSDDERV RLYLSLAV+PDGHAF++KDAAVLLYD  PS EDE S   VVDVLERWS++   +G + MHDAH+ FARE L+DRG VRR A+K+W +Y+SSL+ LR+ D Y LK LWLA+ER+GGDGW KTRPY KALG M ESD +L R T EAVG FQE Q+   + A    RR L +++ +LG +   V +T   L + A   G  E
Sbjct:    4 DISDSAAEAARLALEIGSTISDAVSCAVDLGEELPVIKPVFKTLKAIRTTVETVKNNREELAALEQRCTYITACFVVKCRLIESE-VDVAPLKDCVEAAKNFAERC-SRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGKVDDMKKTL--------------DRIDQRLESLPRSFGKLAAVPMGAPVRKSWHVERRHAMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIVRSTEVREAFSDGIVWLPVNEGAKKRLPSLMLQLARMVHEEIGGSVGRVPSASEDSATYIKQRLEEGHKGRRLKCLVVADNVWEEDVVSKLVETGMWVLLSTRDEAVVKRSRGKAVVVDELSQADAESVLKRAAELPRESRLPDDAVDLIKLCGRVAMDVAFVGRWSTVRGRHDPASWSDAASTIRTEMEKVGHDPDNDSAENIPAKRRKAILQGGFEDLAIGSDDERVQRLYLSLAVMPDGHAFSLKDAAVLLYDRSPSTEDEASAGGVVDVLERWSIIRSAQGTYRMHDAHTDFARECLLDRGHVRRPALKRWTRYLSSLDILRSTDRYVLKGLWLAIERLGGDGWGKTRPYEKALGMMLESD-ALLRTTAEAVGWFQEAQED-LEGASASWRRLLEVEKRELGADHPFVLNTYGNLAIWAERLGNIE 659          
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE)

HSP 1 Score: 726 bits (1873), Expect = 9.780e-241
Identity = 398/685 (58.10%), Postives = 481/685 (70.22%), Query Frame = 3
Query:   75 ATNMSDAAAEAARVALTMGSTVVDVVSFMGDLGEELPVIKPVLKTLKVIREKVETVKKNREDLGSLEGRCTYLTACVIVKCRQQPSSGVDVTPLVDCVEDARKVVERCGSRRHQVSNFMKASSDKGEIAGLNARVDRLTGDLGLAGIAVLNGKV--DGMKAMLVSCTTQAVTGCY-------VLANLDIVMTSVPKPPPKVATVPKGTPALKSWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFVRSPQALETFADGIVWLSVNQGAKERLPSLMLQLARMVHEDIGGSMGRCPVAADDGAAYIKERMVNGHGGKGLKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGLILRSSGKAVGVDYLSKTDAESVLR-TAELPPGVRLPDHAVDLIELCGRVAMDLAFVGRWSTVRGRHDQAAWSHAAQKIREEIVNVCGDSFSGNVADARKKRREAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYDEMPSLEDETSVCVVVDVLERWSVVSLVEGKFNMHDAHSSFAREGLMDRGDVRRRAVKQWVKYISSLEALRAVDAYDLKSLWLAVERVGGDGWWKTRPYVKALGAMDESDPSLCRKTIEAVGDFQEVQKYWADEAERLLRRCLAIKESKLGPEDVAVAHTLYELGVCAREAGRPE 2099
            A  ++DA  E A++A  MGS   DV+ F+ DLGEELP+++PVL+TL++IREKVETVK+N EDL  L  RCTY+TAC IVKCR   +  +DV PL DCV    K VER   +R ++S  +KA  DKG+I  L  R+  L GDL LAGIA L   +  D      V+   Q   G         +LA  + ++  +PKPP KVA VPKGTP  KSWHV+RR V   V +AL   GGP L GL G SG+GKTT A+  V S    ETF+DGIVWL VN+G  + LP LMLQLA+MV EDIGGS+GR P  +DDG AY+K+++ NGHGGKGLKCLVVADNVW+ +VVS+LLETGM +LLSTRDE L+ R++G+ VGVD LS+ +AESVLR  AEL P  RLPD A DLIELCGRVAMDLAFVGRWSTVRGR D+ AWS AA K+R E+      + S    D+R  RR A+L AGF+DLAIGSDDERV RLYLSLAVLPDGHAFTVKDAAVLLYD  P  EDE SV  VV+ LERW+++  VE  + MHDAHS+FARE LMDRGDVRR A+K+ V+ ISSLEALR+++ Y LK LW  V+RVGGDGW  TRPY KAL A+DES+  L R+TIEAV  FQE Q+ W   A R  RR LA++E +LG +   V +T + L  CA      E
Sbjct:    2 AAYVADATGEVAKIASKMGSAAADVIQFVADLGEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCRHGYTE-LDVAPLEDCVNAVEKFVERY-RKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETILRQLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADGGPHLVGLVGDSGAGKTTAASAIVSSIVVRETFSDGIVWLPVNEGVHDNLPCLMLQLAQMVFEDIGGSVGRRPSGSDDGLAYVKQQVENGHGGKGLKCLVVADNVWESDVVSQLLETGMWILLSTRDEELVKRANGEVVGVDELSEAEAESVLRRAAELSPEARLPDDAKDLIELCGRVAMDLAFVGRWSTVRGRQDRTAWSDAACKVRAEMDKGGVTAESNGSEDSRVNRRRAILQAGFEDLAIGSDDERVQRLYLSLAVLPDGHAFTVKDAAVLLYDREPGTEDEASVGGVVEALERWTIIRSVEATYRMHDAHSNFARESLMDRGDVRRPAIKRLVRSISSLEALRSINRYTLKHLWAGVQRVGGDGWATTRPYEKALEALDESNSPLFRETIEAVAWFQEAQEDWTG-ANRTWRRLLAVEEVQLGADHPYVLNTYHCLARCAEHQDNVE 683          
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI)

HSP 1 Score: 724 bits (1869), Expect = 1.580e-240
Identity = 395/693 (57.00%), Postives = 489/693 (70.56%), Query Frame = 3
Query:   75 ATNMSDAAAEAARVALTMGSTVVDVVSFMGDLGEELPV-------IKPVLKTLKVIREKVETVKKNREDLGSLEGRCTYLTACVIVKCRQQPSSGVDVTPLVDCVEDARKVVERCGSRRHQVSNFMKASSDKGEIAGLNARVDRLTGDLGLAGIAVLNGKVDGMKAMLVSC-TTQAVTGCYVLANLDIVMTSVPKPPPKVATVPKGTPALKSWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFVRSPQALETFADGIVWLSVNQGAKERLPSLMLQLARMVHEDIGGSMGRCPVAADDGAAYIKERMVNGHGGKGLKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGLILRSSGKAVGVDYLSKTDAESVLRTA-ELPPGVRLPDHAVDLIELCGRVAMDLAFVGRWSTVRGRHDQAAWSHAAQKIREEIVNVCGDSFSGNVADARKKRREAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYDEMPSLEDETSVCVVVDVLERWSVVSLVEGKFNM---------HDAHSSFAREGLMDRGDVRRRAVKQWVKYISSLEALRAVDAYDLKSLWLAVERVGGDGWWKTRPYVKALGAMDESDPSLCRKTIEAVGDFQEVQKYWADEAERLLRRCLAIKESKLGPEDVAVAHTLYELGVCAREAGRPE 2099
            A   S AAAE  ++ L MGS  VD ++FM +LGE+LP        ++PVLKTL  IRE VE V+ N+E+L +L  RC YLTACV+VK RQ   S +D+TP+ +C+E A ++VERCG R  +++  + ASSDK EIA + A +  L  DL LAG+A+L GK   + AM+    T QA T   +LAN + ++  + K P K+A +PK TP  KSWHV+R  VM  V EALT  GGP L GL G SGSGKTT A+E VRS +  + F+DG+VWL+VN GAK+RLPSLMLQLA M+ E++GG   R P  +DDGAAYIKE+M  GHGGKGLKCLVVADNVW+KEVV KLLETGM VLLSTRDE L++ S G+ VGVD +S+ +AESVLR A ELPP  RLPD AVDLIELCGRVAMDLAFVGRWSTVRGR D+ AWS AA K+R E+  + G+  SG V + R  RR+AVL AGF+DLA GSDDERV RLYLSLAVLPDG  FTVKDAAVLLYD  PS EDE S   VV++LERWSV+  + G + M         HDAHS FARE LMDRGDVRR A+ +W + ISSL+ LR+V  +D++ LWL VE+VGGDGW  TRPY  AL  M++SDP L    + AV  FQ  ++ W +EA    RR L +  +K+GP  ++V  +L+ELG+  + AGR E
Sbjct:    2 AAKSSGAAAEVTKLGLKMGSATVDSITFMAELGEDLPFGEPVLPHLRPVLKTLTAIRETVENVQNNQEELQTLYRRCVYLTACVVVKSRQSSCSEMDLTPVEECLEAAGELVERCGGRG-KMTRVLNASSDKEEIARMKANIRDLEADLSLAGVAILEGKTSDLTAMVERMGTNQAATQEMILANTESIIDRLSKTPAKLAKIPKATPIRKSWHVERLYVMERVFEALTAVGGPHLVGLVGDSGSGKTTAASEIVRSNEVRQAFSDGVVWLTVNHGAKDRLPSLMLQLAHMMCEEVGG---RRPATSDDGAAYIKEKMQRGHGGKGLKCLVVADNVWEKEVVWKLLETGMWVLLSTRDEELVVGSEGEVVGVDEMSEVEAESVLRKASELPPETRLPDDAVDLIELCGRVAMDLAFVGRWSTVRGRSDRTAWSDAAGKVRAEMGKIEGERVSGTVVETRDARRKAVLQAGFEDLASGSDDERVQRLYLSLAVLPDGRGFTVKDAAVLLYDRKPSAEDEASAAGVVEILERWSVLRSIRGCYRMAWRGGHYVLHDAHSDFAREKLMDRGDVRRPALVRWTRNISSLDTLRSVRWHDVRDLWLGVEQVGGDGWKSTRPYEAALAGMEDSDPLLPTSVV-AVAKFQRHEEDW-EEAIATCRRLLDMPVTKVGPYSLSVIRSLHELGLGYKHAGRLE 688          
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE)

HSP 1 Score: 670 bits (1728), Expect = 1.340e-221
Identity = 374/661 (56.58%), Postives = 454/661 (68.68%), Query Frame = 3
Query:  129 GSTVVDVVSFMGDLGEELPVIKPVLKTLKVIREKVETVKKNREDLGSLEGRCTYLTACVIVKCRQQPSSGVDVTPLVDCVEDARKVVERCGSRRHQVSNFMKASSDKGEIAGLNARVDRLTGDLGLAGIAVLNGKVDGMKAMLVSCTT-QAVTGCYVLANLDIVMTSVPKPPPKVATVPKGTPALKSWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFVRSPQALETFADGIVWLSVNQGAKERLPSLMLQLARMVHEDIGGSMGRCPVAADDGAAYIKERMVNGHGGKGLKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGLILRSSGKAV-GVDYLSKTDAESVLRTA-ELPPGVRLPDHAVDLIELCGRVAMDLAFVGRWSTVRGRHDQAAWSHAAQKIREEIVNVCGDSFSGNVADARKKRREAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYDEMPSLEDETSVCVVVDVLERWSVVSLVEGKFNMHDAHSSFAREGLMDRGDVRRRAVKQWVKYISSLEALRAVD-AYDLKSLWLAVERVGGDGWWKTRPYVKALGAMDESDPSLCRKTIEAVGDFQEVQKYWADEAERLLRRCLAIKESKLGPEDVAVAHTLYELGVCAREAGRPE 2099
            G+   DV++F+ +  + LP+I+PVLKTLK +               +L  RCTY+T CVIV+CR+  SSG+  TPL++CV      VERC SRR  +S  +KA+ DK EIAGL  R++ L GDL LAGIA + GKV+ +KA+L    T QA++    LAN DI+   V   P  +ATVP GTPA KSWHV+RR VM AV +AL G GGPRL GL G SGSGKTT AAE VRS +  E F+DGIVWLSVN GA ERL +LM+ LAR+V EDIGGS+GR P   DDGAAY ++RM +GHGGKGLKCLVVADNVW++ V+SKLLETGM VLLSTRDE L+  + G  V GVD LS+ DA SVLR A EL P +RLPD AV+L+ELCGRVAMD+AFVGRWSTVRGR D+ AWS AA K+R +I        S NV D R  RR+AVL AGF+DLAIGSDDER+PRLYLSLAVLPDGHAFT KDA  LLYD  P  EDE S   ++  LERWS +    G + MHDAHS FAR+ +MDRG VR+ AVK+W   +SSL+ LR+ D  + LK LWLAV R+GG+ W   RPY  AL  MDES+P L  K+++++G FQ+ Q  W   A    RR LA+K  +LG +      TL  L  CA   G  E
Sbjct:    6 GTMASDVLAFLTEASDGLPLIEPVLKTLKAVXXXXXXXXXXXXXXAALYQRCTYITGCVIVRCRKG-SSGLKATPLMECVNAVGAFVERC-SRRGMLSRVLKATDDKEEIAGLKQRLEDLEGDLRLAGIATVGGKVEDLKALLEHVDTKQALSHSQTLANHDIMFARVGISPETLATVPAGTPARKSWHVERRHVMRAVCDALPGEGGPRLVGLVGDSGSGKTTAAAEIVRSTEVREAFSDGIVWLSVNDGATERLRALMMHLARVVFEDIGGSVGRRPAGLDDGAAYTRQRMQSGHGGKGLKCLVVADNVWEEAVISKLLETGMWVLLSTRDEALVRSAEGGVVVGVDELSEEDAMSVLRRASELSPELRLPDEAVELVELCGRVAMDVAFVGRWSTVRGRSDRTAWSDAAHKVRSKIER---SRVSDNVWDIRAVRRKAVLQAGFEDLAIGSDDERIPRLYLSLAVLPDGHAFTAKDATALLYDRAPCPEDEVSTEELIRTLERWSALRTEGGAYRMHDAHSGFARDCVMDRGYVRKPAVKRWTLRLSSLDVLRSFDDPFVLKGLWLAVGRLGGESWRNVRPYAAALSEMDESNPLLL-KSLQSLGWFQDAQGDWQS-ASDTCRRILAVKRRQLGADHPHTILTLRALVYCAERLGNAE 659          
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE)

HSP 1 Score: 593 bits (1530), Expect = 3.280e-191
Identity = 350/700 (50.00%), Postives = 439/700 (62.71%), Query Frame = 3
Query:   75 ATNMSDAAAEAARVALTMGSTVVDVVSFMGDLGEELPVIKPVLKTLKVIREKVETVKKNREDLGSLEGRCTYLTACVIVKCRQQPSSGVDVTPLVDCVEDARKVVERCGSRRHQVSNFMKASSDKGEIAGLNARVDRLTGDLGLAGIAVLNGKVDGMKAMLVSCTT-QAVTGCYVLANLDIVMTSVPKPPPKVATVPKGTPALKSWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFVRSPQALETFADGIVWLSVNQGAKERLPSLMLQLARMVHEDIGGSMGRCPVAADDGAAYIKERMVNGHGGKGLKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGLILRSSGKAVGVDYLSKTDAESVLR-TAELPPGVRLPDHAVDLIELCGRVAMDLAFVGRWSTVRGRHDQAAWSHAAQKIREEIVNVCGDSFSGNVADARKKRREAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYDEMPSLEDETSVCVVVDVLERWSVVSLVEGKFNM---------HDAHSSFAREGLMDRGDVRRRAVKQWVKYISSLEALRAVDAYDLKSLWLAVERVGGDGWWKTRPYVKALGAMDESDP-----------SLCRKTIEAVGDFQEVQKYWA-----DEAERLLRRCLAIKESKLGPEDVAVAHTLYELGVCAREAGR 2093
            A   S AAAE  ++AL MGS  VD ++F+ DL E+LP                    +N+E+L +L  RC +LT CVIVK RQ   S +DV+P+ +C+E A ++VERCG R  +++  + ASSDK +IA + A +  L  +L LAG+A+L GK   ++A +      QA T   +LAN +I+   + K P K A +PK TP  KSWHV+R  V+  V E LT  GGP L GL G SGSGKTT A+E VRS +                   +RLPSLMLQLA MV+E+IGG   R P  +DDG AYIKERM  GHGG+GLKCL V DNVW+KEVV +LLE GM VLLSTRDE L+    G+ V V+ LS+ +AESVLR  AELPP  RLPD AVDLIELCGRVAMDLAF GR STVRGR D+ AWS AA K+R E+     +   G V + R  RR+AV+ AGF DLAIGSDDERV RLYLSLAVLPDG  FTVKDAAVL+YD MPS EDE S   VV++LERWS +  + G + M         HDAHS FARE LMDRGDV R A+ +W + ISS++ LRAV  ++++ LWL  E+VGGDGW  TRPY  AL  +++SDP            +   ++  +    E+   +      +EAE +LR CL I  + LG   V VA TL +L  C R AG+
Sbjct:    2 AAESSGAAAEVTKLALKMGSATVDSITFVADLCEDLPF-------------------ENQEELQTLYRRCVFLTTCVIVKSRQSSFSEMDVSPVEECLEAAGELVERCGGRG-KMTRVLNASSDKDQIARMKANIRDLEANLSLAGVAILEGKTSDLRATVERMAKIQAATQEVILANTEIITDRLSKTPAKPAKIPKSTPIWKSWHVERFDVVERVFEPLTADGGPPLVGLVGDSGSGKTTAASEIVRSNE-------------------DRLPSLMLQLAHMVYEEIGG---RRPATSDDGTAYIKERMHRGHGGEGLKCLGVVDNVWEKEVVCELLEAGMWVLLSTRDEELVTGWEGEVVEVNELSEVEAESVLRKAAELPPETRLPDDAVDLIELCGRVAMDLAFGGRLSTVRGRSDRTAWSKAASKVRTEMSKGECEGVRGTVVETRDARRKAVVQAGFGDLAIGSDDERVQRLYLSLAVLPDGRRFTVKDAAVLIYDRMPSAEDEASAAGVVEILERWSALCSIRGCYRMAWRGSHYVLHDAHSDFAREKLMDRGDVCRPALVRWTRNISSVDTLRAVRWHEVRDLWLGAEQVGGDGWKITRPYEAALAGLEDSDPHRPTLLDMPVTKVRPYSLSVIRSLHELGLGYKHAGCLEEAEEVLRGCLVIGGTLLGFTHVTVAKTL-DLSGCVRAAGQ 658          
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE)

HSP 1 Score: 566 bits (1459), Expect = 1.590e-185
Identity = 329/601 (54.74%), Postives = 396/601 (65.89%), Query Frame = 3
Query:  219 IREKVETVKKNREDLGSLEGRCTYLTACVIVKCRQ-QPSSGVDVTPLVDCVEDARKVVERCGSRRHQVSNFMKASSDKGEIAGLNARVDRLTGDLGLAGIAVLNGKVDGMKAMLVSCTTQAVTGCYVLANLDIVMTSVPKPPPKVATVPKGTPALKSWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFVRSPQALETFADGIVWLSVNQGAKERLPSLMLQLARMVHEDIGGSMGRCPVAADDGA-AYIKERMVNGHGGKGLKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGLILRSSGKAVGVDYLSKTDAESVLRTA-ELPPGVRLPDHAVDLIELCGRVAMDLAFVGRWSTVRGRHDQAAWSHAAQKIREEIVNVCGDSFSGNVADARKKRREAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYDEMPSLEDETSVCVVVDVLERWSVV-SLVEGKFNMHDAHSSFAREGLMDRGDVRRRAVKQWVKYISSLEALRAVDAYDLKSLWLAVERVGGDGWWKTRPYVKALGAMDESDPSLCRKTIEAVGDFQEVQKYWADEAERLLRRCLAI 2009
            +RE VETV + R++L +LE RCTY+TAC+I K R   P S  +V+PL DCV +A K VER   R                                             M+ M+     QA     +LAN +I++  +PKPP K A VP+GTP  KSWHV+R  V   V+EALTG  GPRL GL G SG+GKTT AAE VRS    E+F+DGIVWL+VN GA +RLPSLMLQLARMV EDIGG +G  P  +   A AYIK+RM NGHGGKGLKCL VADNVW+KEVVS LL+TGM+VLLSTR E L+  + G  V +D LS  DAESVLR+A ELPP VRLPD AVDLI+LCGRVAMDLAFVGRWSTVRGRHD+ AWS AA K+R EI  + GD     V  AR  RR+A+L AG +DLAIGSDDERV RLYLSLAVLPD     V DAA+LLYD  P+ EDE SV  V+DVLERWSV+ S    K+ MHD  S FAR  LMDRGDVRR A+++WV YISSL+ +R+ +A  LK  WL VE+VGG+GW +T P   AL  MD+ +P L +++I AV    E  + W ++A  +  R L +
Sbjct:    1 MRETVETVYQTRDELAALEKRCTYMTACIIAKFRHAHPGSAPNVSPLEDCVMEAEKFVERRKKRT--------------------------------------------MEQMV---QNQAAARKELLANQEIIIDRLPKPPIKKAYVPQGTPTRKSWHVERH-VTETVVEALTGEAGPRLVGLVGDSGAGKTTAAAELVRSNVVRESFSDGIVWLTVNYGANKRLPSLMLQLARMVQEDIGGRVGGHPNESGGNADAYIKQRMENGHGGKGLKCLAVADNVWEKEVVSMLLKTGMTVLLSTRHEELVTGARGVPVRLDELSARDAESVLRSAAELPPAVRLPDDAVDLIDLCGRVAMDLAFVGRWSTVRGRHDRVAWSDAAAKVRAEIAKIEGDDI---VDGARGNRRKAILQAGLEDLAIGSDDERVQRLYLSLAVLPDDQGIQVHDAALLLYDRDPTAEDEESVARVLDVLERWSVLRSTWAYKYYMHDVQSEFARASLMDRGDVRRHALRRWVGYISSLDTVRSYNADYLKHQWLDVEKVGGEGWDETHPCETALAEMDDPEP-LLQESIAAVAKAHEAHEDW-EKASTIWHRSLGV 548          
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE)

HSP 1 Score: 565 bits (1455), Expect = 2.030e-180
Identity = 305/493 (61.87%), Postives = 354/493 (71.81%), Query Frame = 3
Query:  618 MTSVPKPPPKVATVPKGTPALKSWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFVRSPQALETFADGIVWLSVNQGAKERLPSLMLQLARMVHEDIGGSMGRCPVAADDGAAYIKERMVNGHGGKGLKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGLILRSSGKAVGVDYLSKTDAESVLR-TAELPPGVRLPDHAVDLIELCGRVAMDLAFVGRWSTVRGRHDQAAWSHAAQKIREEIVNVCGDSFSGNVADARKKRREAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYDEMPSLEDETSVCVVVDVLERWSVVSLVEGKFNMHDAHSSFAREGLMDRGDVRRRAVKQWVKYISSLEALRAVDAYDLKSLWLAVERVGGDGWWKTRPYVKALGAMDESDPSLCRKTIEAVGDFQEVQKYWADEAERLLRRCLAIKESKLGPEDVAVAHTLYELGVCAREAGR 2093
            M  + K   K+  VPKGTPA KSW+VKRR VM  V E L   GGPRL GL G SGSGKTTVA+E VRS +  E F+DGI WLSVN GAKERL SLMLQLAR+V+EDIG S+GR P ++DD AAYI++RM  G GGK LKCLVVADNVW+KEVVSKLLETGM VLLSTR+  L+  + G+ VGVD LS+ DA SVLR  AELPP  ++P  AVDLIELCGRVAMDLAFVGRWSTVRGR D+ AWS A  K+REE+  V     S  +A+ R  RR+A+L AGF+DLAIGSDDERV RLYLSLAV PDGHAFTV+DAAVLLYD  P  EDE SV VVVD LERW+V+   +G + MHDAHS FARE LMD G VRR AVK+WV  IS LE LR+ D Y LK LWLAVE VGGDGW K+R Y  AL  MD    +L R+ I A+   QE  + W + A    RR L I++ +LG +   V  +   L  CA + G+
Sbjct:   23 MDQLSKTQAKLTKVPKGTPARKSWYVKRRHVMDTVFEGLASDGGPRLVGLVGGSGSGKTTVASESVRSTEVQEAFSDGIAWLSVNDGAKERLSSLMLQLARVVYEDIGCSVGRRPTSSDDCAAYIRQRMKKGTGGKKLKCLVVADNVWEKEVVSKLLETGMWVLLSTRNITLVTEAHGEVVGVDELSEADAMSVLRRAAELPPQGKIPGDAVDLIELCGRVAMDLAFVGRWSTVRGRQDRMAWSDAVSKVREEMGKVGSGDASEKLAETRDARRKAILRAGFEDLAIGSDDERVQRLYLSLAVFPDGHAFTVRDAAVLLYDREPCAEDEASVAVVVDTLERWTVLRSEQGAYRMHDAHSIFARETLMDHGYVRRPAVKRWVSSISCLEVLRSSDPYVLKGLWLAVEGVGGDGWLKSRAYSAALVGMDRLHSALARQNIIALARLQEAHEDW-EGASTTWRRLLEIEKKQLGADHYHVLKSYRSLASCAEQLGQ 514          
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 8.520e-141
Identity = 305/697 (43.76%), Postives = 394/697 (56.53%), Query Frame = 3
Query:   87 SDAAAEAARVALTMGSTVVDVVSFMGDLGEELPVIKPVLKTLKVIREKVETVKKNREDLGSLEGRCTYLTACVIVKCRQQPSSGVDVTPLVDCVEDARKVVERCGSRRHQVSNFMKASSDKGEIAGLNARVDRLTGDLGLAGIAVLNGKVDGMKAMLVSCTTQAVTGCYVLANLDIVMTSVPKPPPKVATVPKGTPALKSWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFV------------------RSPQALETFADGIVWLSVNQG--AKERLPSLMLQLARMVHEDIGGSMGRCPVAADDG--AAYIKERMVNGHGGKG--LKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGLILRSSGKAVGVDYLSKTDAESVLR-TAELPPGVRLPDHAVDLIELCGRVAMDLAFVGRWSTVRGRHDQAAWSHAAQKIREEIVNVCGDSFSGNV-ADARKKRREAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYD----EMPSLEDETSVCVVVDVLERWSVVSLVEGKFNMHDAHSSFAREGLMDRGDVRRRAVKQWVKYISSLEALRAVDAYDLKSLWLAVERVGGDGWWKTRPYVKALGAMDESDPSLCRKTIEAVGDFQEVQKYWA---DEAERLLRRCLAIKESKLGPEDVAVAHTLYELGVCA 2078
            S A  EAARV L MGST  D+V F  +LG E+PV+  VLKTLK IR + E V+ N E L +LE RCTY+TACVIVK RQ  SS ++V PL  CV  A   + RC SRR       KASSD  E+  LN+RVD LTGDLGLAGIA L+ KVD +KAML     Q           + +  SVP     VA VP G P   SWHV R +V+ AV E L+ G  P++ GL G SGSGKTT AA  V                  R  +  E F DG+VWL V +G  + ER+P+LM QLA+ V ED+  S G  P A+  G  +A+I +  V G G      +CLVVAD+VW+ +++ +L  TGM VL ++RD  L+ R  G  V VD LSK +AE +LR  AEL  G  LP  A  +IE C R+A  L FVGRWSTV+G  D+  W+ A   I  E+  + G++ +     D    +R A+L AGF DLA  +     P LYLSLAV+PDG AF  K+AAV L+D    E  S         VV  LE+W+VV++    F MHDAHS FAR  L    DVR  A+++W  + S L+ +R++D +++  LW A E +GG+ W  +RPY  AL ++ +S P  C  +++AV +F   +  W    D A RLLR      +     E   V HTL  L  CA
Sbjct:   49 SGAPEEAARVFLKMGSTAADIVMFTEELGGEVPVVGAVLKTLKAIRLRFEAVQSNTERLKALEERCTYVTACVIVKWRQTSSSEMNVAPLESCVNAAEDFIARC-SRRGLCGRCTKASSDNDELLTLNSRVDSLTGDLGLAGIASLDAKVDDLKAMLAEVIAQ-----------NTMPASVP-----VAAVPNGKPVEHSWHVARDRVVDAVYEHLSCGQTPQVVGLVGRSGSGKTTCAASIVGESTGRRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQLAKTVFEDLKHSYGFAPGASPTGGGSAFISD-FVRGKGSAAGRKRCLVVADDVWEVDILEELRHTGMWVLFTSRDPDLVERVEGSVVPVDQLSKAEAECLLRGAAELSTGSSLPSAAAQVIERCDRMANRLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEANAQKSDEDLSGVKRVAILRAGFLDLAAQNGFN--PLLYLSLAVMPDGRAFGAKEAAVFLFDDWAEERASQRRTRQAAKVVANLEQWAVVTMHGNLFRMHDAHSDFARNKLKRSEDVRASALRRWRGFTSRLDTIRSMDYFEMVDLWHATEMIGGESWRVSRPYHVALDSLRDSSPE-CIPSLKAVVEFGINECAWEVTHDVALRLLR-----VQKDAAVEHAEVRHTLESLIHCA 719          
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE)

HSP 1 Score: 381 bits (978), Expect = 9.340e-107
Identity = 254/669 (37.97%), Postives = 357/669 (53.36%), Query Frame = 3
Query:  165 DLGEELPVIKPVLKTLKVIREKVETVKKNREDLGSLEGRCTYLTACVIVKCRQQPSSGVDVTPLVDCVEDARKVVERCGSRRHQVSNFMKASSDKGEIAGLNARVDRLTGDLGLAGIAVLNGKVDGMKAMLVSCTTQAVTGCYVLANLDIVMTSVPKPPPKVATVPKGTPALKSWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFV--RSPQALETFADGIVWLSVNQ--GAKERLPSLMLQLARMVHEDIGGSMGRCPVAADDGAAYIKERMVNGHGGKGLKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGLILRSSGKAVGVDYLSKTDAESVLR-TAELPPGVRLPDHAVDLIELCGRVAMDLAFVGRWSTVRGRH----DQAAWSHAAQKIREEIVNVCGDSFSGNVADARKK--RREAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYDEMPSLEDETSVCVVVDVLERWSVVSL-VEGKFNMHDAHSSFAREGLMDRGDVRRRAVKQWVKYISSLEALRAVDAYDLKSLWLAVERVGGDGWWKTRPYVKALGAMDESDPSLCRKTIEAVG-------------DFQEVQKYWADEAERLLRRCLAIKESKLGPEDVAVAHTLYELGVCAREAGRP 2096
            ++G   PV+ P+   L   +  V+   +N+E+L  L  RC  +T  VI K +   +S +DV PL +CV+  ++V ER   R  +++   +   D  +I  L  R++ +   +GL+G+     K+D + A L                         +P PK+A VPK  P  KS+HV R  V+  V + L G GGP +A L G SG+GKTT AA  V  R  +    F DG+VWL V +  G  +RLPSLM  LA+ +HED+       P   DDG +Y+++ +      + L+CLVVAD+VW+  VV KL ETGM VLL+TR   +      + V +D L   +AE VLR  AELP G RL D ++ ++E+CGRVAMD AFVG W++VR  +       AW    +++  +I +V G    GN  +   +   R AVL AGF+   IG +D     LY+ LAV P+G  F   DAAVLL       E+E      + +LERW V+      K+  HDAH+ FAR+ LMDR D+R  AV++W ++IS L+    V+ + L  +W A+E VGG GWW  RPY   L  M  S+P+    T  AVG             +  E+ K      E L RR L I+E+ LGP+D+ VA TL ELG+C RE GRP
Sbjct:   32 EIGASAPVVAPLCTALLKAKGVVDAASRNKEELEELHERCEMITIQVIDKAKASKTSTIDVKPLQECVDKLKEVAERYHDRG-RLARLAQFRRDGEDIQRLRKRIEDVVPIMGLSGVVNNGEKLDQILARL-------------------------QPGPKLAPVPKKAPFTKSFHVVRDGVVDRVCKILGGDGGPAMAALTGGSGAGKTTSAAAMVGERGDRVRALFPDGVVWLWVGREAGTADRLPSLMSNLAKRLHEDVMKGAVDAPTG-DDGVSYVRKIVSQ----EKLRCLVVADDVWEASVVQKLRETGMWVLLTTRFPEM--GEPEERVVMDTLIPAEAEDVLRGAAELPLGERLCDASMKVLEICGRVAMDTAFVGSWTSVRTTNGVPKSNKAWERTVEELTAQIDHVRGQMKVGNTGEDNDRAINRLAVLRAGFK--YIGREDPLAQELYVKLAVFPEGFLFGESDAAVLL-------ENEEVAKGPISILERWGVLRTDASEKYRTHDAHADFARKKLMDRNDLREPAVERWTEHISRLDFAVGVEIFVLLPMWRALEEVGGKGWWALRPYDDQLIQMVTSNPATSYATSGAVGVVMNLYRGARKLGELAEIMK----RVEPLFRRALEIEEATLGPDDIQVAVTLQELGLCMRETGRP 654          
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 1.720e-101
Identity = 257/710 (36.20%), Postives = 376/710 (52.96%), Query Frame = 3
Query:   66 RKTATNMSDAAAEAARVALTMGSTVVD-VVSFMGDLGEELPVIKPVLKTLKVIREKVETVKKNREDLGSLEGRCTYLTACVIVKCRQQPSSGVDVTPLVDCVEDARKVVERCGSRRHQVSNFMKASSDKGEIAGLNARVDRLTGDLGLAGIAVLNGKVDGMKAMLVSCTTQAVTGCYVLANLDIVMTSVPKPPPKVATVPKGTPALKSWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFVRSPQA-------------------LET----FADGIVWLSVN--QGAKERLPSLMLQLARMVHEDIGGSMGRCPVAADDGAAYIKERMVNGHGGKGLKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGLILRSSGKAVGVDYLSKTDAESVLR-TAELPPGVRLPDHAVDLIE-LCGRVAMDLAFVGRWSTVRGRHDQAAWSHAAQKIREEIVNVCGDSFSGNVADARKKRREAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYDEMPSLEDETSVCVV---VDVLERWSVVSL-VEGKFNMHDAHSSFAREGLMDRGDVRRRAVKQWVKYISSLEALRAVDAYDLKSLWLAVERVGGDGWWKTRPYVKALGAMDESDPSLCRKT--IEAVGDFQEVQKYWADEAERLLRRCLAIKESKLGPEDVAVAHTLYELGVCAREAGR 2093
            R T     DA   A   A    STVV+ V + + ++G   PV+ P+   L   +  V+   +N+E+LG L  RC  +T  VI K +   +S +DV+PL  CV+   +V +R   +   ++   +   D  +I  L AR++ +   +GLAG+  +  +++ ++               +LA L       P+P PK+A VP G PA ++WH  R  V   V + L+G   P +A L G SG+GK+T AA+ VR+ +                    LE     F+DG+V+L V   +GA +RLP LM +LA+ +HED+       P A + G +Y+K+ M         +CLVVAD+VW+  VV+KL ETGM VLL+TR   ++  + G  V VD L+  +AE VLR  AELP G RL D A+ +++ +CG VAMD+AFVG WS VR   D  AW+ A  KI + IV+V  D+   N  D++ KR   +L AGF  L    +     +LY+++AV PDG+AF V DAAVLL D  P       + V    +++LERW+V+++   GK+ MHD H  FAR+ + D+GDVR+  V++W   IS L+     D Y L  +W AVE VGGDGW+  RPY K L +M     S C K+  ++ V +  E ++  A E E L R  L   +   G +       L+ LG      GR
Sbjct:   76 RSTMATRGDAVQSAQETARLGISTVVESVATGIIEIGAATPVVAPLCVALLKAKGIVDGASRNKEELGELCERCDLITVQVIDKAKASNTSTIDVSPLQGCVDKLDEVAKRYHDQGC-LARLAQFRRDGDDIQRLRARIEAIVPIMGLAGVVNIMDRLEDVR--------------QILARLQ------PRPRPKLAPVPPGLPAGEAWHAVRDHVEDEVYKILSGDE-PAVAALTGKSGAGKSTAAADMVRNRKVDIRGLDDETEDQARTRMDRLERVRARFSDGVVYLRVGKGEGAADRLPDLMRKLAKALHEDVLKKTAGAPEAGEKGESYVKKMMTR----TKKRCLVVADDVWEPPVVAKLKETGMWVLLTTRFPEIVEPNEG--VDVDQLTPAEAEDVLRGAAELPRGQRLCDPAMQVLDDICGFVAMDIAFVGSWSMVRHTDDSGAWAEAVSKINDTIVDVREDADGMN--DSQVKRL-GILRAGFDYLG-EEEGTLAQKLYVAIAVFPDGYAFGVSDAAVLLNDTHPPDPAPHHMKVASRAIEILERWAVLTMNASGKYRMHDTHMDFARDKIRDQGDVRKPVVRRWTSRISRLDFAVGRDVYALSDIWRAVEWVGGDGWFDLRPYDKELVSMG----SDCSKSHALDVVAELYEQEQKLA-EMETLTREVLEHADDDAGADSCVRMVALWYLGRSLSIQGR 748          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.3.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZW8_ECTSI2.350e-25261.42NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KRK8_9PHAE9.780e-24158.10NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FZY7_ECTSI1.580e-24057.00NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KLK9_9PHAE1.340e-22156.58NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KJ30_9PHAE3.280e-19150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J759_9PHAE1.590e-18554.74NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KYW3_9PHAE2.030e-18061.87NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D8LFN6_ECTSI8.520e-14143.76NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JSI2_9PHAE9.340e-10737.97NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KE50_9PHAE1.720e-10136.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:30358..35144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZW8
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size3679
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.21e-254
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size3201
COG categoryC
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.3.6prot_P-littoralis_Contig144.3.6Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 30441..34749 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.523649-UTR-P-littoralis_Contig144:30357..304401680789677.523649-UTR-P-littoralis_Contig144:30357..30440Pylaiella littoralis U1_48UTRP-littoralis_Contig144 30358..30440 +
1680789677.5792515-UTR-P-littoralis_Contig144:34749..351441680789677.5792515-UTR-P-littoralis_Contig144:34749..35144Pylaiella littoralis U1_48UTRP-littoralis_Contig144 34750..35144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.539174-CDS-P-littoralis_Contig144:30440..309591680789677.539174-CDS-P-littoralis_Contig144:30440..30959Pylaiella littoralis U1_48CDSP-littoralis_Contig144 30441..30959 +
1680789677.5514808-CDS-P-littoralis_Contig144:31762..331291680789677.5514808-CDS-P-littoralis_Contig144:31762..33129Pylaiella littoralis U1_48CDSP-littoralis_Contig144 31763..33129 +
1680789677.5614362-CDS-P-littoralis_Contig144:33417..345951680789677.5614362-CDS-P-littoralis_Contig144:33417..34595Pylaiella littoralis U1_48CDSP-littoralis_Contig144 33418..34595 +
1680789677.5701091-CDS-P-littoralis_Contig144:34612..347491680789677.5701091-CDS-P-littoralis_Contig144:34612..34749Pylaiella littoralis U1_48CDSP-littoralis_Contig144 34613..34749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.3.6

>prot_P-littoralis_Contig144.3.6 ID=prot_P-littoralis_Contig144.3.6|Name=mRNA_P-littoralis_Contig144.3.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1067bp
MSDAAAEAARVALTMGSTVVDVVSFMGDLGEELPVIKPVLKTLKVIREKV
ETVKKNREDLGSLEGRCTYLTACVIVKCRQQPSSGVDVTPLVDCVEDARK
VVERCGSRRHQVSNFMKASSDKGEIAGLNARVDRLTGDLGLAGIAVLNGK
VDGMKAMLVSCTTQAVTGCYVLANLDIVMTSVPKPPPKVATVPKGTPALK
SWHVKRRQVMGAVLEALTGGGGPRLAGLFGASGSGKTTVAAEFVRSPQAL
ETFADGIVWLSVNQGAKERLPSLMLQLARMVHEDIGGSMGRCPVAADDGA
AYIKERMVNGHGGKGLKCLVVADNVWDKEVVSKLLETGMSVLLSTRDEGL
ILRSSGKAVGVDYLSKTDAESVLRTAELPPGVRLPDHAVDLIELCGRVAM
DLAFVGRWSTVRGRHDQAAWSHAAQKIREEIVNVCGDSFSGNVADARKKR
REAVLSAGFQDLAIGSDDERVPRLYLSLAVLPDGHAFTVKDAAVLLYDEM
PSLEDETSVCVVVDVLERWSVVSLVEGKFNMHDAHSSFAREGLMDRGDVR
RRAVKQWVKYISSLEALRAVDAYDLKSLWLAVERVGGDGWWKTRPYVKAL
GAMDESDPSLCRKTIEAVGDFQEVQKYWADEAERLLRRCLAIKESKLGPE
DVAVAHTLYELGVCAREAGRPEEAEELLRRSLAITESMLGPEDVAVARTL
HKLGVCALEAGRVEEAEELLRRCLAIKESKLGPENVAVARTLYELGVCAR
EAGQLDEAEQLLGRCLAIQESKLGPEDVAVARMLDWLGFCARKAGRPEEA
EELWRPCLAIRESKLGPEDVAVARTLHELGVCAREAGRVEEAEELLRRCL
AIQEFKLGPEDVAVARTLHELGVYALEAGRVEEAEELLRRCQAIEESKLG
PEDVAVAGTLDWLGVCALEAGRVEEAEELLRRCLAIRESKLGPEDMAVAH
TLRQLGVCAREAGRLEEAEELWRRCLAIQESDLGPEDVAVAGTLDWLGVC
AREAGRLEEAEELWSAVWRLEKDVSVTRTLGHVCVCLRLAGRPEEAEELL
RRSLAIRESKLGLEHV*
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mRNA from alignment at P-littoralis_Contig144:30358..35144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.3.6 ID=mRNA_P-littoralis_Contig144.3.6|Name=mRNA_P-littoralis_Contig144.3.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=4787bp|location=Sequence derived from alignment at P-littoralis_Contig144:30358..35144+ (Pylaiella littoralis U1_48)
GTCGCCGCAGCACTGGCGGGTGCACGTTTGACAGCACACCTGAAGTGTAG CGGTGGAAATAGTGAAGGAAGACGGCTACCAACATGAGTGATGCCGCAGC GGAGGCTGCCAGGGTCGCCCTGACGATGGGGTCGACCGTGGTGGACGTGG TATCTTTCATGGGGGACTTGGGTGAGGAGCTACCGGTGATTAAGCCGGTC TTGAAGACGCTCAAGGTCATTCGTGAAAAGGTGGAGACAGTAAAAAAGAA CCGGGAGGACCTAGGGAGCCTCGAAGGAAGGTGCACTTACCTCACGGCAT GCGTCATCGTAAAGTGTAGGCAACAGCCCAGCTCGGGGGTGGATGTTACT CCACTCGTGGACTGCGTTGAGGATGCACGGAAGGTTGTGGAGCGCTGTGG TAGCCGACGACACCAGGTGTCGAATTTCATGAAGGCCTCCAGCGACAAAG GCGAGATTGCTGGATTGAACGCACGTGTGGACCGTTTGACGGGGGACTTG GGCTTGGCAGGCATTGCCGTTCTGAACGGGAAGGTTGACGGCATGAAGGC AATGCTGGTTAGTTGCACGACACAGGCTGTTACTGGCTGCTATGTCCTAG CCGTACAGTGTAGGCAATATTATAATCTGGAATATGTACAGCAGCTCGTT TGCTCGCATAGATGGGATTTGAGTTGCGAAGGCCTCTGGCCCCGTTGAAC ACGGAGTCACATAGTTATTTGTTATTGGATAATGATGTACAATTGGGGAG CTCAGACACAAACATCTTTGACTACTCAGCGCGAGGCAGAGGGTACTTGT TCTCGACACATGTCTTGACATATAATTTTGGTCAGTTGGTTAAGCGACAA GGACACCGTAGTCGTGGATCTTCTCAGACTTGATGAATGAGCCCAAAAAC ATGATTTGCGGGGTTTCTTCTCTTTTTCTTGATGCGTCTGATTTGCTGCT GGAAATGGCGTCATAGTCAAGCTGGGAGACCTTGACTAATACTTGAACAC GCCCATGTCACCATCACCAACCGCCGCCCTCATCGCTTCCTCCACTCTGT TTCTAGGGAATTATTTCTTCCGGTAGGGTTCCTCAGGTCGCGAGATATCT GGACGCGACTGCCAAAGTTTCTTGAACGTCCATTGCCATTTGCTCAGTTA TGTTGATGTTGCTTCTCGCATGTTTTCCCTTTTCCATCTCACGTAGCAGC GTGGTCGTGGGCGGTTGCATGTGCTCGTACATTCCAACGAAAGCTGGTTG CCCTCAGCTCGCCTGCCGTGATATGGATGTTCCCTTTTACAGCTGCGGCG GTGTTTGTTTTTTTCTGGAGGACGACTTCTTGCCCGAGGTGTTTTAACAC GCACGCTCTTGCTATTTTTCCGTGTACGTTTCTGTTCCAGGAGCGTATCA GCAAGAACCTAGACATCGTGATGACCAGTGTACCAAAGCCGCCGCCCAAG GTAGCCACGGTTCCCAAGGGCACGCCAGCACTAAAGAGCTGGCACGTCAA GCGTCGCCAGGTGATGGGCGCTGTGCTTGAGGCACTGACCGGCGGTGGGG GGCCGCGTTTGGCGGGACTTTTTGGTGCTAGCGGTTCGGGCAAGACCACA GTCGCGGCTGAGTTTGTGAGAAGTCCCCAGGCGCTCGAAACTTTCGCCGA CGGTATCGTGTGGTTATCGGTCAACCAAGGTGCAAAGGAGCGCCTCCCGT CTTTGATGCTTCAGCTAGCCCGTATGGTGCATGAAGATATCGGGGGTAGT ATGGGCCGTTGCCCGGTGGCAGCGGACGACGGTGCTGCGTACATCAAGGA GCGCATGGTGAACGGGCACGGGGGCAAGGGATTGAAGTGTCTCGTGGTGG CCGACAACGTGTGGGACAAGGAGGTGGTCTCGAAGCTCCTGGAGACTGGC ATGTCCGTTCTCCTATCGACCCGCGACGAAGGGTTGATACTGCGCTCATC GGGTAAGGCCGTGGGCGTGGACTACCTTTCCAAGACAGATGCAGAGTCGG TGCTGAGAACAGCAGAGCTACCTCCTGGGGTGCGGTTGCCCGACCATGCC GTTGACTTGATCGAGCTGTGTGGTCGCGTGGCGATGGACCTTGCATTCGT GGGACGGTGGAGCACCGTTCGCGGCAGGCACGACCAGGCGGCTTGGTCTC ATGCGGCTCAGAAAATTCGCGAAGAGATTGTCAACGTTTGTGGTGACTCC TTCAGCGGCAACGTGGCTGATGCTCGCAAGAAACGCCGCGAGGCCGTTCT TAGTGCCGGCTTCCAGGACCTAGCAATAGGATCAGACGACGAGCGAGTGC CGCGGCTGTACCTGTCGCTTGCCGTGTTGCCCGATGGCCATGCATTTACC GTGAAGGATGCGGCTGTGCTGCTGTATGATGAAATGCCAAGCCTTGAGGA CGAGACATCAGTGTGCGTTGTGGTGGACGTTCTGGAGCGTTGGTCCGTCG TCAGTCTCGTCGAAGGAAAGTTCAACATGCACGACGCTCATTCAAGCTTT GCTAGGGAAGGCCTCATGGACCGCGGGGACGTACGCCGGCGTGCCGTGAA ACAATGGGTGAAGTATATCTCCTCTCTCGAAGCTCTCCGGGCCGTTGATG CGTATGATCTGAAGAGCTTATGGCTGGCTGTGGAACGGGTCGGTGGAGAC GGCTGGTGGAAGACCCGCCCGTACGTGAAGGCGTTGGGCGCTATGGACGA ATCCGATCCCTCACTTTGTCGAAAAACCATCGAGGCTGTGGGAGACTTTC AAGAAGTGCAGAAATATTGGGCGTGAGCGAACGCCACTTGGCGTCTTTTG TTGGAGGCCGAGAAGAGAGACCTGGGACTTGACCATCCATTCGTGCTGAA CACCTATGAATCCCTAGCTGATTGCGCCGATCGACTAGGTAATACCGTCG AGGCGGCGCAATGGCGCGAGAAGGAGCTAAAAGGGATTCCGTTGGCCCTG GCTAAGGTTAACGTTCAAGGTGTTTCTGGTCTAGCCGCGAGGCCCGATGG TTCGGAGGATCCACTGAGGTCTCTCGCTGGTACCATTTTTTGGGTAAAAC CGGACAACAGGGATGAAGCTGAACGACTGCTCAGACGCTGCCTGGCGATC AAGGAGTCCAAGCTGGGCCCAGAGGATGTGGCGGTGGCCCACACGCTGTA TGAGCTGGGCGTTTGTGCTCGAGAGGCAGGGCGGCCGGAGGAGGCGGAGG AGTTGTTGAGGCGCTCTCTGGCGATTACAGAGTCCATGCTGGGCCCAGAG GATGTGGCGGTGGCCCGCACGCTTCATAAGCTGGGCGTTTGTGCTCTCGA GGCAGGGCGGGTGGAGGAGGCGGAGGAGTTGTTGAGACGCTGCCTGGCGA TCAAGGAGTCCAAGCTGGGCCCAGAGAATGTGGCGGTGGCCCGCACGCTT TATGAGCTGGGCGTTTGTGCTCGAGAGGCAGGCCAGCTGGATGAAGCTGA ACAACTGCTTGGGCGCTGCCTGGCGATCCAGGAGTCCAAGCTGGGCCCAG AGGATGTGGCGGTGGCCCGCATGCTTGATTGGCTGGGCTTTTGTGCTCGA AAGGCAGGGCGGCCGGAGGAGGCGGAGGAGTTGTGGAGGCCCTGCCTGGC GATTAGAGAGTCCAAGCTGGGCCCAGAGGATGTGGCGGTGGCTCGCACGC TTCATGAGCTGGGCGTTTGTGCTCGAGAGGCAGGACGGGTGGAGGAGGCG GAGGAGTTGTTGAGGCGCTGCCTGGCGATCCAGGAGTTCAAGCTGGGCCC AGAGGATGTGGCGGTGGCTCGCACGCTTCATGAGCTGGGCGTTTATGCTC TCGAGGCAGGGCGGGTGGAGGAGGCGGAGGAGTTGTTGAGGCGCTGCCAG GCGATCGAGGAGTCGAAGCTGGGCCCAGAGGATGTGGCGGTTGCCGGCAC GCTTGATTGGCTGGGCGTTTGTGCTCTTGAGGCAGGACGGGTGGAGGAGG CGGAGGAGTTGTTGAGGCGCTGCCTGGCGATCAGAGAGTCCAAGCTGGGC CCAGAGGATATGGCGGTCGCCCACACGCTTCGCCAGCTGGGGGTTTGTGC TCGAGAGGCAGGGCGGCTGGAGGAGGCGGAGGAGTTGTGGAGGCGCTGCC TAGCGATCCAGGAGTCCGATCTGGGCCCAGAGGATGTGGCGGTGGCCGGC ACGCTTGATTGGCTGGGCGTTTGTGCTCGAGAGGCAGGGCGGCTGGAGGA GGCGGAGGAGTTGTGGAGCGCTGTCTGGCGATTGGAGAGTCCAAGCTGGG CCCAGAGGATGTGTCGGTGACCCGCACGTTGGGGCATGTCTGTGTATGTC TTCGACTGGCAGGGCGGCCGGAAGAGGCGGAGGAATTGTTGAGGCGCAGT CTCGCGATCAGAGAGTCCAAGCTGGGCCTAGAGCATGTGTAGGTGGCCCG CGCGCTGCATCAGCTGGGCTTATGGGATCGAGAGGCAGGGCTGCTGGAGG AGGTGGAACAATTGTTGAGGCGCGGCCTGGCGATCCAGGAGTCCAAGCTT GGCCCAGAGGATGTGGCGGTGGCCCGCACGCTTTTTGGCTAGGCGTTTGT GCTCGAGAGCCAGGGCGTGGAAAGCTTCGCTGGCCGCAAGAAATACTTGT TGTTTGCGTGAGGAGGAACATTCCTCTGTTCCACCAAGGAATAGCGTAGA TTGGCTATTCCAGGTCATTCCGTCACTGTGAAATCTACGAAAGCAAGCGG CGGACCCCGGCTGGGGGACGGCAGAGGAGCTCTTGTCCTTGTGCTGGCAC AGATGTTGCACATCAAAAGCCGCACATATCTCGCCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:30358..35144+

>mRNA_P-littoralis_Contig144.3.6 ID=mRNA_P-littoralis_Contig144.3.6|Name=mRNA_P-littoralis_Contig144.3.6|organism=Pylaiella littoralis U1_48|type=CDS|length=3201bp|location=Sequence derived from alignment at P-littoralis_Contig144:30358..35144+ (Pylaiella littoralis U1_48)
ATGAGTGATGCCGCAGCGGAGGCTGCCAGGGTCGCCCTGACGATGGGGTC
GACCGTGGTGGACGTGGTATCTTTCATGGGGGACTTGGGTGAGGAGCTAC
CGGTGATTAAGCCGGTCTTGAAGACGCTCAAGGTCATTCGTGAAAAGGTG
GAGACAGTAAAAAAGAACCGGGAGGACCTAGGGAGCCTCGAAGGAAGGTG
CACTTACCTCACGGCATGCGTCATCGTAAAGTGTAGGCAACAGCCCAGCT
CGGGGGTGGATGTTACTCCACTCGTGGACTGCGTTGAGGATGCACGGAAG
GTTGTGGAGCGCTGTGGTAGCCGACGACACCAGGTGTCGAATTTCATGAA
GGCCTCCAGCGACAAAGGCGAGATTGCTGGATTGAACGCACGTGTGGACC
GTTTGACGGGGGACTTGGGCTTGGCAGGCATTGCCGTTCTGAACGGGAAG
GTTGACGGCATGAAGGCAATGCTGGTTAGTTGCACGACACAGGCTGTTAC
TGGCTGCTATGTCCTAGCCAACCTAGACATCGTGATGACCAGTGTACCAA
AGCCGCCGCCCAAGGTAGCCACGGTTCCCAAGGGCACGCCAGCACTAAAG
AGCTGGCACGTCAAGCGTCGCCAGGTGATGGGCGCTGTGCTTGAGGCACT
GACCGGCGGTGGGGGGCCGCGTTTGGCGGGACTTTTTGGTGCTAGCGGTT
CGGGCAAGACCACAGTCGCGGCTGAGTTTGTGAGAAGTCCCCAGGCGCTC
GAAACTTTCGCCGACGGTATCGTGTGGTTATCGGTCAACCAAGGTGCAAA
GGAGCGCCTCCCGTCTTTGATGCTTCAGCTAGCCCGTATGGTGCATGAAG
ATATCGGGGGTAGTATGGGCCGTTGCCCGGTGGCAGCGGACGACGGTGCT
GCGTACATCAAGGAGCGCATGGTGAACGGGCACGGGGGCAAGGGATTGAA
GTGTCTCGTGGTGGCCGACAACGTGTGGGACAAGGAGGTGGTCTCGAAGC
TCCTGGAGACTGGCATGTCCGTTCTCCTATCGACCCGCGACGAAGGGTTG
ATACTGCGCTCATCGGGTAAGGCCGTGGGCGTGGACTACCTTTCCAAGAC
AGATGCAGAGTCGGTGCTGAGAACAGCAGAGCTACCTCCTGGGGTGCGGT
TGCCCGACCATGCCGTTGACTTGATCGAGCTGTGTGGTCGCGTGGCGATG
GACCTTGCATTCGTGGGACGGTGGAGCACCGTTCGCGGCAGGCACGACCA
GGCGGCTTGGTCTCATGCGGCTCAGAAAATTCGCGAAGAGATTGTCAACG
TTTGTGGTGACTCCTTCAGCGGCAACGTGGCTGATGCTCGCAAGAAACGC
CGCGAGGCCGTTCTTAGTGCCGGCTTCCAGGACCTAGCAATAGGATCAGA
CGACGAGCGAGTGCCGCGGCTGTACCTGTCGCTTGCCGTGTTGCCCGATG
GCCATGCATTTACCGTGAAGGATGCGGCTGTGCTGCTGTATGATGAAATG
CCAAGCCTTGAGGACGAGACATCAGTGTGCGTTGTGGTGGACGTTCTGGA
GCGTTGGTCCGTCGTCAGTCTCGTCGAAGGAAAGTTCAACATGCACGACG
CTCATTCAAGCTTTGCTAGGGAAGGCCTCATGGACCGCGGGGACGTACGC
CGGCGTGCCGTGAAACAATGGGTGAAGTATATCTCCTCTCTCGAAGCTCT
CCGGGCCGTTGATGCGTATGATCTGAAGAGCTTATGGCTGGCTGTGGAAC
GGGTCGGTGGAGACGGCTGGTGGAAGACCCGCCCGTACGTGAAGGCGTTG
GGCGCTATGGACGAATCCGATCCCTCACTTTGTCGAAAAACCATCGAGGC
TGTGGGAGACTTTCAAGAAGTGCAGAAATATTGGGCGGATGAAGCTGAAC
GACTGCTCAGACGCTGCCTGGCGATCAAGGAGTCCAAGCTGGGCCCAGAG
GATGTGGCGGTGGCCCACACGCTGTATGAGCTGGGCGTTTGTGCTCGAGA
GGCAGGGCGGCCGGAGGAGGCGGAGGAGTTGTTGAGGCGCTCTCTGGCGA
TTACAGAGTCCATGCTGGGCCCAGAGGATGTGGCGGTGGCCCGCACGCTT
CATAAGCTGGGCGTTTGTGCTCTCGAGGCAGGGCGGGTGGAGGAGGCGGA
GGAGTTGTTGAGACGCTGCCTGGCGATCAAGGAGTCCAAGCTGGGCCCAG
AGAATGTGGCGGTGGCCCGCACGCTTTATGAGCTGGGCGTTTGTGCTCGA
GAGGCAGGCCAGCTGGATGAAGCTGAACAACTGCTTGGGCGCTGCCTGGC
GATCCAGGAGTCCAAGCTGGGCCCAGAGGATGTGGCGGTGGCCCGCATGC
TTGATTGGCTGGGCTTTTGTGCTCGAAAGGCAGGGCGGCCGGAGGAGGCG
GAGGAGTTGTGGAGGCCCTGCCTGGCGATTAGAGAGTCCAAGCTGGGCCC
AGAGGATGTGGCGGTGGCTCGCACGCTTCATGAGCTGGGCGTTTGTGCTC
GAGAGGCAGGACGGGTGGAGGAGGCGGAGGAGTTGTTGAGGCGCTGCCTG
GCGATCCAGGAGTTCAAGCTGGGCCCAGAGGATGTGGCGGTGGCTCGCAC
GCTTCATGAGCTGGGCGTTTATGCTCTCGAGGCAGGGCGGGTGGAGGAGG
CGGAGGAGTTGTTGAGGCGCTGCCAGGCGATCGAGGAGTCGAAGCTGGGC
CCAGAGGATGTGGCGGTTGCCGGCACGCTTGATTGGCTGGGCGTTTGTGC
TCTTGAGGCAGGACGGGTGGAGGAGGCGGAGGAGTTGTTGAGGCGCTGCC
TGGCGATCAGAGAGTCCAAGCTGGGCCCAGAGGATATGGCGGTCGCCCAC
ACGCTTCGCCAGCTGGGGGTTTGTGCTCGAGAGGCAGGGCGGCTGGAGGA
GGCGGAGGAGTTGTGGAGGCGCTGCCTAGCGATCCAGGAGTCCGATCTGG
GCCCAGAGGATGTGGCGGTGGCCGGCACGCTTGATTGGCTGGGCGTTTGT
GCTCGAGAGGCAGGGCGGCTGGAGGAGGCGGAGGAGTTGTGGAGCGCTGT
CTGGCGATTGGAGAAGGATGTGTCGGTGACCCGCACGTTGGGGCATGTCT
GTGTATGTCTTCGACTGGCAGGGCGGCCGGAAGAGGCGGAGGAATTGTTG
AGGCGCAGTCTCGCGATCAGAGAGTCCAAGCTGGGCCTAGAGCATGTGTA
G
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