mRNA_P-littoralis_Contig144.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.18.1
Unique NamemRNA_P-littoralis_Contig144.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig144.18.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.750e-19
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    4 EAAQWREKELKGIPLALAKVNVQGVSGLAARPDGSEDPLRSLAGTIFRVKPDNRD--EAERLLRRCLAIKESKLGPEDVAVAHTLYELGFCVQEAGRLE 294
            EAA WR KE++ +PLALA+V  Q  SG     DG+   L S+A T+ + KP + D  +AE LLRR L I+E+ LG ED+AVA TLY+LG C++EAGRLE
Sbjct:  517 EAADWRGKEVEALPLALARVQSQTDSGKVEGLDGANG-LASVASTMLKFKPGSIDRAQAEVLLRRSLEIQEAALGHEDIAVADTLYQLGICLREAGRLE 614
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BLAST of mRNA_P-littoralis_Contig144.18.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.710e-17
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    4 EAAQWREKELKGIPLALAKVNVQGVSGLAARPDGSEDPLRSLAGTIFRVKPDNRDEAERLLRRCLAIKESKLGPEDVAVAHTLYELGFCVQEAGRLE 294
            EAA+W EKE++G+PLALA++N    SGL A  D + D L S+A T    +P +R  AE LLRR L +KE+ LGPE + VA TL +LG   +EAGRL+
Sbjct:  660 EAAKWHEKEVEGLPLALARMNALVRSGLEADLDDA-DSLSSVAATALEFRPGDRALAETLLRRSLDVKEAILGPEHLQVADTLRQLGVSAREAGRLD 755
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BLAST of mRNA_P-littoralis_Contig144.18.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.580e-9
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    4 EAAQWREKELKGIPLALAKVNVQGVSGLAARPDGSEDP--LRSLAGTIFRVKPDNRDEAERLLRRCLAIKESKLGPEDVAVAHTLYELGFCVQEAGRLE 294
            E  +W+ +  + +PLA+ ++ ++  +G     DG +D   L S+A T+  + PD+R  AE L+R  L I+E KLG +DV VA+ L+ LG  V  AGRL+
Sbjct:  660 EMTEWQAELRRVLPLAVVRMQLRLDAG---EVDGVDDANALNSIASTMLNLAPDDRGNAEALMRHSLEIQEVKLGRDDVYVAYNLHHLGVSVHLAGRLD 755
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KYW3_9PHAE5.750e-1953.54NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FZW8_ECTSI1.710e-1751.55NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KLK9_9PHAE1.580e-938.38NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:58450..59037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZZ7
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size590
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.66e-20
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size588
COG categoryC
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.2416906-CDS-P-littoralis_Contig144:58449..590371680789677.2416906-CDS-P-littoralis_Contig144:58449..59037Pylaiella littoralis U1_48CDSP-littoralis_Contig144 58450..59037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.18.1prot_P-littoralis_Contig144.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 58450..59037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.18.1

>prot_P-littoralis_Contig144.18.1 ID=prot_P-littoralis_Contig144.18.1|Name=mRNA_P-littoralis_Contig144.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
VEAAQWREKELKGIPLALAKVNVQGVSGLAARPDGSEDPLRSLAGTIFRV
KPDNRDEAERLLRRCLAIKESKLGPEDVAVAHTLYELGFCVQEAGRLEEA
EELLRRSLAIGESKLGPEDVAVARTLHQLGDCAREAGQLEEAEELWRRCL
AIRESKLGPEDVTVAHTLDWLCTCVREAGRVEEAEELWRRCLAIRE
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mRNA from alignment at P-littoralis_Contig144:58450..59037-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.18.1 ID=mRNA_P-littoralis_Contig144.18.1|Name=mRNA_P-littoralis_Contig144.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig144:58450..59037- (Pylaiella littoralis U1_48)
GTCGAGGCGGCGCAATGGCGCGAGAAGGAGCTAAAAGGGATTCCGTTGGC
CCTGGCTAAGGTTAACGTTCAAGGTGTTTCTGGTCTAGCCGCGAGGCCCG
ATGGTTCGGAGGATCCACTAAGGTCTCTCGCTGGTACCATTTTTAGGGTA
AAACCGGACAACAGGGATGAAGCTGAACGACTGCTCAGACGCTGCCTGGC
GATCAAGGAGTCCAAGCTGGGCCCAGAGGATGTGGCGGTGGCCCACACGC
TTTATGAGCTGGGCTTTTGTGTTCAAGAGGCAGGGCGGCTGGAGGAGGCG
GAGGAGTTGTTGAGGCGCTCTCTGGCGATCGGAGAGTCCAAGCTGGGCCC
AGAGGATGTGGCGGTGGCCCGCACGCTTCATCAGCTGGGCGATTGTGCTC
GAGAGGCAGGCCAGCTGGAGGAGGCGGAGGAGTTGTGGAGGCGCTGCCTG
GCGATCAGAGAGTCCAAGCTGGGCCCAGAGGATGTGACGGTGGCCCACAC
GCTTGATTGGCTGTGCACTTGTGTTCGAGAGGCAGGGCGGGTGGAGGAGG
CGGAGGAGTTGTGGAGGCGCTGCCTGGCGATCAGAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:58450..59037-

>mRNA_P-littoralis_Contig144.18.1 ID=mRNA_P-littoralis_Contig144.18.1|Name=mRNA_P-littoralis_Contig144.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig144:58450..59037- (Pylaiella littoralis U1_48)
GTCGAGGCGGCGCAATGGCGCGAGAAGGAGCTAAAAGGGATTCCGTTGGC
CCTGGCTAAGGTTAACGTTCAAGGTGTTTCTGGTCTAGCCGCGAGGCCCG
ATGGTTCGGAGGATCCACTAAGGTCTCTCGCTGGTACCATTTTTAGGGTA
AAACCGGACAACAGGGATGAAGCTGAACGACTGCTCAGACGCTGCCTGGC
GATCAAGGAGTCCAAGCTGGGCCCAGAGGATGTGGCGGTGGCCCACACGC
TTTATGAGCTGGGCTTTTGTGTTCAAGAGGCAGGGCGGCTGGAGGAGGCG
GAGGAGTTGTTGAGGCGCTCTCTGGCGATCGGAGAGTCCAAGCTGGGCCC
AGAGGATGTGGCGGTGGCCCGCACGCTTCATCAGCTGGGCGATTGTGCTC
GAGAGGCAGGCCAGCTGGAGGAGGCGGAGGAGTTGTGGAGGCGCTGCCTG
GCGATCAGAGAGTCCAAGCTGGGCCCAGAGGATGTGACGGTGGCCCACAC
GCTTGATTGGCTGTGCACTTGTGTTCGAGAGGCAGGGCGGGTGGAGGAGG
CGGAGGAGTTGTGGAGGCGCTGCCTGGCGATCAGAGAG
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