mRNA_P-littoralis_Contig144.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.16.1
Unique NamemRNA_P-littoralis_Contig144.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:53274..55524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKU5
PFAMsNB-ARC,TPR_10,TPR_12,TPR_8
Model size2251
Max annot lvl2759|Eukaryota
KEGG koko:K06972
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.00056
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size1329
COG categoryC
BRITEko00000,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.1699033-UTR-P-littoralis_Contig144:53273..541951680789677.1699033-UTR-P-littoralis_Contig144:53273..54195Pylaiella littoralis U1_48UTRP-littoralis_Contig144 53274..54195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.1827247-CDS-P-littoralis_Contig144:54195..555241680789677.1827247-CDS-P-littoralis_Contig144:54195..55524Pylaiella littoralis U1_48CDSP-littoralis_Contig144 54196..55524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.16.1prot_P-littoralis_Contig144.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 54196..55524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.16.1

>prot_P-littoralis_Contig144.16.1 ID=prot_P-littoralis_Contig144.16.1|Name=mRNA_P-littoralis_Contig144.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=443bp
MAPTLHQLGVCALEAGRLEEAEELLRRCLAIRESKLGPEDVAVANTLHEL
GFCARKAGQLEEAEELLRRCLAIRESKLGPEGVSVALTLHQLGVCALEAG
RLEEPEELLRRCLAIQESKLSPEDVAVALTLYELGVCALEARRLEEAEEL
LRRCLAIRESKLGPEDVAVAHTLYELGFCALEAGQLEEAEELLRRCLAIR
ESNLGSEDVAVALTLFWLGFCVQEAGRLEEAEELWRRCLAIRESKLGPED
VLVARTLHQLGFCAREARRLEEAEELFRRCLAIEESKLGPEDVLVARTLH
ELGFCAREARRLEEAEELSRRCLAIEESKLGPEDVLVARTLHELGFCARE
ARRLEGAEELFRRCLAIEESKLGPENVLVARTLRRLGSCAREAGRLEEAE
ELLRRCLAIREAKLSPEDMAVARTLDELGSCAREAGRLEEAE*
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mRNA from alignment at P-littoralis_Contig144:53274..55524-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.16.1 ID=mRNA_P-littoralis_Contig144.16.1|Name=mRNA_P-littoralis_Contig144.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2251bp|location=Sequence derived from alignment at P-littoralis_Contig144:53274..55524- (Pylaiella littoralis U1_48)
ATGGCCCCCACGCTTCATCAGCTGGGGGTTTGTGCTCTCGAGGCAGGGCG
GCTGGAGGAGGCGGAGGAGTTGTTGAGGCGCTGCCTGGCGATCAGAGAGT
CCAAGCTGGGCCCAGAGGATGTGGCGGTGGCCAACACGCTTCATGAGCTG
GGCTTTTGTGCTCGAAAGGCAGGTCAGCTGGAGGAGGCGGAGGAGTTGTT
GAGGCGCTGCCTGGCGATCAGAGAGTCCAAGCTGGGCCCAGAGGGTGTGT
CGGTGGCCCTCACGCTTCATCAGCTCGGGGTTTGTGCTCTCGAGGCAGGG
CGGCTGGAGGAGCCGGAGGAGTTGTTGAGGCGCTGCCTGGCGATCCAGGA
GTCCAAGCTGAGCCCAGAGGATGTGGCGGTGGCCCTCACGCTTTATGAGC
TGGGGGTTTGTGCTCTCGAGGCAAGGCGGCTGGAGGAGGCGGAGGAGTTG
TTGAGGCGCTGCCTGGCGATCAGAGAGTCCAAGCTGGGCCCAGAGGATGT
GGCGGTGGCCCACACGCTTTATGAGCTGGGCTTTTGTGCTCTCGAGGCAG
GCCAGTTGGAGGAGGCGGAGGAGTTGTTGAGGCGCTGCCTGGCGATCAGA
GAGTCCAACCTTGGCTCAGAGGACGTGGCGGTGGCCCTCACGCTTTTTTG
GCTGGGCTTTTGTGTTCAAGAGGCAGGGCGGCTGGAGGAGGCGGAAGAGT
TGTGGAGGCGCTGCCTGGCGATCAGAGAGTCCAAGCTGGGCCCAGAGGAC
GTGTTGGTGGCCCGCACGCTTCATCAGCTGGGCTTTTGTGCTCGAGAGGC
AAGGCGGCTGGAGGAGGCGGAGGAGTTGTTTAGGCGCTGTCTGGCGATCG
AGGAGTCCAAGCTGGGCCCAGAGGATGTGTTGGTGGCCCGCACGCTTCAT
GAGCTGGGTTTTTGTGCTCGAGAGGCAAGGCGGCTGGAGGAGGCGGAGGA
GTTGTCTAGGCGCTGTCTGGCGATCGAGGAGTCCAAGCTGGGCCCAGAGG
ATGTGTTGGTGGCCCGCACGCTTCATGAGCTGGGCTTTTGCGCTCGAGAG
GCAAGGCGGCTGGAGGGGGCGGAGGAGTTGTTTAGGCGCTGTCTGGCAAT
CGAGGAGTCCAAGCTGGGCCCAGAGAATGTGTTGGTGGCCCGCACGCTTC
GTCGGCTGGGCTCTTGTGCTCGAGAGGCAGGGCGGCTGGAGGAGGCGGAG
GAGTTGTTGAGGCGCTGCCTGGCGATCAGAGAGGCCAAGCTAAGCCCAGA
GGATATGGCGGTGGCCCGCACGCTTGATGAGCTGGGATCTTGTGCTCGAG
AGGCGGGGCGGCTGGAGGAGGCGGAGTAGTTGTTGAGGCGCTGCCTGGCG
ATCCAGGAGTACTAGCGGGGCCCAGAGAATGTGGCGGAGGCCCACGCGCT
TGATTGGCTGGGCGTTTGTGCTCGAAGTGGTGAGAAGAATAGCATTTGGC
ACAAATCACTTCTTCTTTGTGTTCGAGGAAAGCAGAGGAATGTTCCTCCA
GAATACCGTAGACATGCTTGTTCCCGCCCATTCCAGGTGGTCAAATCTAC
GAAAGTAGGCGGCTGACCACAGCTAGGGGATGACGAAGGAGACGAAGGAG
CTCTTCTGCCTTGTGTCCTTGTGTGTCAATGACCTCCACAGATAGATCTC
GGCAAAAACGGAACACGACTCGATACGAAGCACGCTTACATTGAGATTGT
GGGTCTAGTGTCCATCGGGTGTAGCCAAGGTTTCAGGCCGTCGGGTGTTG
TTCGCAGTGTGATTGGAGATTTTAGCGATCTATACCACTTACTCTCATGG
CACATCATCACAAAGCAGCAGCAGCAACTTAAATTTTCACGCAACCCCGC
TGAAAAACGAAGAGGCGACCTGAAAACTGCAGGGCGGGCGAGATGAGATT
TCTATCGTCTGTCGGGCTTCGCCAACGTTTGGGGTTGTGAGGTGTCATGC
GTGACGGGAAAAAAGAGGTTTCCGTTACCTCCATATCATACAGGAGTACG
CAAAGTTGTACAGCTGTATTAGTAGAAGAGCGAGTGTTCTCTCCTGCCGC
GTCGAAGTAGAGTGTCCGGGCTTTATTTTTGGGGTGGCATAGCACCGCAG
CAAGCCGCACCAGGGAGGTCGGTACTGGTCGCGGTGAGAGGGAGAGAGTG
ATGAGTCTGGATCTGCCGTCGCGTGATGTCAGAAGGTCTTCCCTCCGTCT
GGAAACGTCCGGCAAAAGGAAGTGTTCCACGCGGCGGAATACGGTGGAAT
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:53274..55524-

>mRNA_P-littoralis_Contig144.16.1 ID=mRNA_P-littoralis_Contig144.16.1|Name=mRNA_P-littoralis_Contig144.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1329bp|location=Sequence derived from alignment at P-littoralis_Contig144:53274..55524- (Pylaiella littoralis U1_48)
ATGGCCCCCACGCTTCATCAGCTGGGGGTTTGTGCTCTCGAGGCAGGGCG
GCTGGAGGAGGCGGAGGAGTTGTTGAGGCGCTGCCTGGCGATCAGAGAGT
CCAAGCTGGGCCCAGAGGATGTGGCGGTGGCCAACACGCTTCATGAGCTG
GGCTTTTGTGCTCGAAAGGCAGGTCAGCTGGAGGAGGCGGAGGAGTTGTT
GAGGCGCTGCCTGGCGATCAGAGAGTCCAAGCTGGGCCCAGAGGGTGTGT
CGGTGGCCCTCACGCTTCATCAGCTCGGGGTTTGTGCTCTCGAGGCAGGG
CGGCTGGAGGAGCCGGAGGAGTTGTTGAGGCGCTGCCTGGCGATCCAGGA
GTCCAAGCTGAGCCCAGAGGATGTGGCGGTGGCCCTCACGCTTTATGAGC
TGGGGGTTTGTGCTCTCGAGGCAAGGCGGCTGGAGGAGGCGGAGGAGTTG
TTGAGGCGCTGCCTGGCGATCAGAGAGTCCAAGCTGGGCCCAGAGGATGT
GGCGGTGGCCCACACGCTTTATGAGCTGGGCTTTTGTGCTCTCGAGGCAG
GCCAGTTGGAGGAGGCGGAGGAGTTGTTGAGGCGCTGCCTGGCGATCAGA
GAGTCCAACCTTGGCTCAGAGGACGTGGCGGTGGCCCTCACGCTTTTTTG
GCTGGGCTTTTGTGTTCAAGAGGCAGGGCGGCTGGAGGAGGCGGAAGAGT
TGTGGAGGCGCTGCCTGGCGATCAGAGAGTCCAAGCTGGGCCCAGAGGAC
GTGTTGGTGGCCCGCACGCTTCATCAGCTGGGCTTTTGTGCTCGAGAGGC
AAGGCGGCTGGAGGAGGCGGAGGAGTTGTTTAGGCGCTGTCTGGCGATCG
AGGAGTCCAAGCTGGGCCCAGAGGATGTGTTGGTGGCCCGCACGCTTCAT
GAGCTGGGTTTTTGTGCTCGAGAGGCAAGGCGGCTGGAGGAGGCGGAGGA
GTTGTCTAGGCGCTGTCTGGCGATCGAGGAGTCCAAGCTGGGCCCAGAGG
ATGTGTTGGTGGCCCGCACGCTTCATGAGCTGGGCTTTTGCGCTCGAGAG
GCAAGGCGGCTGGAGGGGGCGGAGGAGTTGTTTAGGCGCTGTCTGGCAAT
CGAGGAGTCCAAGCTGGGCCCAGAGAATGTGTTGGTGGCCCGCACGCTTC
GTCGGCTGGGCTCTTGTGCTCGAGAGGCAGGGCGGCTGGAGGAGGCGGAG
GAGTTGTTGAGGCGCTGCCTGGCGATCAGAGAGGCCAAGCTAAGCCCAGA
GGATATGGCGGTGGCCCGCACGCTTGATGAGCTGGGATCTTGTGCTCGAG
AGGCGGGGCGGCTGGAGGAGGCGGAGTAG
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