mRNA_P-littoralis_Contig144.91.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.91.1
Unique NamemRNA_P-littoralis_Contig144.91.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:248427..248984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size526
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.1059508-UTR-P-littoralis_Contig144:248426..2486331680789677.1059508-UTR-P-littoralis_Contig144:248426..248633Pylaiella littoralis U1_48UTRP-littoralis_Contig144 248427..248633 +
1680789677.1374438-UTR-P-littoralis_Contig144:248929..2489841680789677.1374438-UTR-P-littoralis_Contig144:248929..248984Pylaiella littoralis U1_48UTRP-littoralis_Contig144 248930..248984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.1188042-CDS-P-littoralis_Contig144:248633..2486641680789677.1188042-CDS-P-littoralis_Contig144:248633..248664Pylaiella littoralis U1_48CDSP-littoralis_Contig144 248634..248664 +
1680789677.1288748-CDS-P-littoralis_Contig144:248696..2489291680789677.1288748-CDS-P-littoralis_Contig144:248696..248929Pylaiella littoralis U1_48CDSP-littoralis_Contig144 248697..248929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.91.1prot_P-littoralis_Contig144.91.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 248634..248929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.91.1

>prot_P-littoralis_Contig144.91.1 ID=prot_P-littoralis_Contig144.91.1|Name=mRNA_P-littoralis_Contig144.91.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
MLIASSVHREDCCMHVVLLSLFGVEDSLASLGGESPKSHLSLFRSEVVKC
SVPLVSWLVSGLRRLLCESYFGVIVEIVGLKGRPNGL*
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mRNA from alignment at P-littoralis_Contig144:248427..248984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.91.1 ID=mRNA_P-littoralis_Contig144.91.1|Name=mRNA_P-littoralis_Contig144.91.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig144:248427..248984+ (Pylaiella littoralis U1_48)
GGGGGCGGCGAAGGCGGGTTTGGCAATGAGAGTTGAGAGTTTGTCGAGAG
CTGTGGGGTTCAAAGTCGGATGACGGTCCCGTCGCCAATGTTGCCGTGAG
CAACGACGGCAGCAGCGCGTGGAAGTGGCCCTTATGGTGGAGTGGTAGAG
GAAAGTTACCCGTGGAAGGGGGTTCAGAGTTTGATTTGTTCTAGCACGCG
AGGGGATATGCTTATCGCCTCTTCTGTGCACCGCGAGGCGGAACGTTTTA
GTTCTGGACGTATGTGTTGTACTGCTGTATGCACGTCGTTTTGCTCTCAT
TGTTTGGTGTGGAAGATTCATTGGCATCGTTGGGTGGAGAATCCCCTAAG
AGTCATTTGAGTTTGTTTCGATCCGAGGTGGTTAAGTGTAGTGTGCCGTT
GGTGTCATGGCTGGTTTCAGGGTTACGGCGTCTCCTTTGTGAGAGTTATT
TTGGTGTCATTGTGGAGATAGTAGGGCTGAAAGGGCGACCGAACGGGCTT
TAGCCCAAATTTTTATCAGTGTGGCAAACATTGCGTGCCACAGTACTACA
CGACGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:248427..248984+

>mRNA_P-littoralis_Contig144.91.1 ID=mRNA_P-littoralis_Contig144.91.1|Name=mRNA_P-littoralis_Contig144.91.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig144:248427..248984+ (Pylaiella littoralis U1_48)
ATGCTTATCGCCTCTTCTGTGCACCGCGAGGACTGCTGTATGCACGTCGT
TTTGCTCTCATTGTTTGGTGTGGAAGATTCATTGGCATCGTTGGGTGGAG
AATCCCCTAAGAGTCATTTGAGTTTGTTTCGATCCGAGGTGGTTAAGTGT
AGTGTGCCGTTGGTGTCATGGCTGGTTTCAGGGTTACGGCGTCTCCTTTG
TGAGAGTTATTTTGGTGTCATTGTGGAGATAGTAGGGCTGAAAGGGCGAC
CGAACGGGCTTTAG
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