mRNA_P-littoralis_Contig144.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.45.1
Unique NamemRNA_P-littoralis_Contig144.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:134781..135369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size302
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.9920459-CDS-P-littoralis_Contig144:134782..1350071680789676.9920459-CDS-P-littoralis_Contig144:134782..135007Pylaiella littoralis U1_48CDSP-littoralis_Contig144 134783..135007 -
1680789677.0017889-CDS-P-littoralis_Contig144:135294..1353691680789677.0017889-CDS-P-littoralis_Contig144:135294..135369Pylaiella littoralis U1_48CDSP-littoralis_Contig144 135295..135369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.45.1prot_P-littoralis_Contig144.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 134783..135369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.45.1

>prot_P-littoralis_Contig144.45.1 ID=prot_P-littoralis_Contig144.45.1|Name=mRNA_P-littoralis_Contig144.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
ATTRSTTINKQLEAAVSRAEEVMDKIPSVTSAMGEAGGTIATSQPGLAGD
VSSTPSASIDPMTNGPLLGAINSLIVDNLKAMVPLINNILPQVDNIMDKK
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mRNA from alignment at P-littoralis_Contig144:134781..135369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.45.1 ID=mRNA_P-littoralis_Contig144.45.1|Name=mRNA_P-littoralis_Contig144.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=589bp|location=Sequence derived from alignment at P-littoralis_Contig144:134781..135369- (Pylaiella littoralis U1_48)
GCGACGACGAGATCCACTACTATCAACAAGCAACTGGAAGCGGCAGTTTC
TCGTGCGGAGGAAGTTATGGACAAGGTGAACGTTTAAACCGCATCTATTT
CAATCGTAACGTCGCCTCTTTCTGGCATGTGTGATGAAGAAAGGCAAGCA
TGCTTACTCATATGACCAGATGGCCGGCAAGTATAGGAAGGAAGTCCTCT
ATTTTTGATACACGGTTCGATTTACTGCTCTAGTCGTGCCATCAAGCGCC
GGCGTGGGAGGGTTGTTTCTGTGCTCCCCTGTCGACATATGCCATGTGCG
ACGAACCGCTAATTTTAATCGGGACGTTTCCTCCCGTTGTGTGTCTTCTA
TCGTTTCGAAAGATACCTTCTGTGACTTCTGCTATGGGAGAGGCCGGCGG
GACTATAGCCACATCGCAGCCCGGCCTTGCCGGCGATGTGTCCTCGACAC
CATCAGCGTCCATAGATCCCATGACGAACGGCCCCCTTCTTGGTGCCATC
AACAGCCTGATCGTCGACAACCTCAAGGCGATGGTGCCCCTCATCAACAA
TATCCTGCCGCAAGTCGACAACATTATGGACAAGAAGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:134781..135369-

>mRNA_P-littoralis_Contig144.45.1 ID=mRNA_P-littoralis_Contig144.45.1|Name=mRNA_P-littoralis_Contig144.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig144:134781..135369- (Pylaiella littoralis U1_48)
GCGACGACGAGATCCACTACTATCAACAAGCAACTGGAAGCGGCAGTTTC
TCGTGCGGAGGAAGTTATGGACAAGATACCTTCTGTGACTTCTGCTATGG
GAGAGGCCGGCGGGACTATAGCCACATCGCAGCCCGGCCTTGCCGGCGAT
GTGTCCTCGACACCATCAGCGTCCATAGATCCCATGACGAACGGCCCCCT
TCTTGGTGCCATCAACAGCCTGATCGTCGACAACCTCAAGGCGATGGTGC
CCCTCATCAACAATATCCTGCCGCAAGTCGACAACATTATGGACAAGAAG
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