mRNA_P-littoralis_Contig144.3.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.3.3
Unique NamemRNA_P-littoralis_Contig144.3.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:20615..21815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size423
Hectar predicted targeting categorymitochondrion
Exons2
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.8901584-CDS-P-littoralis_Contig144:20614..206971680789676.8901584-CDS-P-littoralis_Contig144:20614..20697Pylaiella littoralis U1_48CDSP-littoralis_Contig144 20615..20697 -
1680789676.8991055-CDS-P-littoralis_Contig144:21475..216981680789676.8991055-CDS-P-littoralis_Contig144:21475..21698Pylaiella littoralis U1_48CDSP-littoralis_Contig144 21476..21698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.9083035-UTR-P-littoralis_Contig144:21698..218151680789676.9083035-UTR-P-littoralis_Contig144:21698..21815Pylaiella littoralis U1_48UTRP-littoralis_Contig144 21699..21815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.3.3prot_P-littoralis_Contig144.3.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 20615..21698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.3.3

>prot_P-littoralis_Contig144.3.3 ID=prot_P-littoralis_Contig144.3.3|Name=mRNA_P-littoralis_Contig144.3.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MLSSRFFTAGVALGHLHHRRSLTYRYHASHPTPVLAFSHSVLLHNQESAN
TKRPVIRKLSTRSFQNHPFRQWYSRCLWFAVFPCFWQSTAICVRFLPIAV
FK
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mRNA from alignment at P-littoralis_Contig144:20615..21815-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.3.3 ID=mRNA_P-littoralis_Contig144.3.3|Name=mRNA_P-littoralis_Contig144.3.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1201bp|location=Sequence derived from alignment at P-littoralis_Contig144:20615..21815- (Pylaiella littoralis U1_48)
GAGGATGGTGTCTCCATGCCGTCCTTGCGACGCTGGTGATGATGTCGCCC
TAAACATGTCCTCCTTGTCTGGGTCCACGTTGCTTTTGGCGTTGCCCAAG
GCCACATCACCAGCACCATGCTCTCGTCACGCTTCTTCACTGCCGGCGTT
GCCTTAGGTCACCTCCATCACCGCCGCTCTCTCACATACCGTTATCATGC
GAGTCATCCCACCCCCGTGTTAGCTTTTTCGCATTCCGTATTGCTCCATA
ACCAGGAGAGTGCGAACACCAAACGACCCGTCATACGAAAGCTCTCGACG
AGATCTTTCCAAAACCACCCGTTTCGGCAGTGGTACTCTCCTGGTTGTGG
AGCAATACGGAATGCAAAAAAGCAACACGGGGGTGCGATGACTCGCATGA
TTACGGCAACAGCTCTTTCTTGTTGTTCCTTTCCAATCAGTTCCCTAAAA
AACTCCACTGCTGTGCACTTGAGGTACAAGTCTTCTGAAAAAAAAGTTCA
CGCTCGGAGTGAGATCGACCAAGCTCTCCCCGTTCGTCGCTGCTCGTCTA
CCTCCGTCCTTGGCTGCGAAACTGGTTACTGGACGGCACAATCCCTCTGT
GCATCCTAGATCGTACCGTCTTTTGTCGCGTGCCTCCGCGCACAAATGCT
TGTGATGTACATTGCTGTACGGCCGCTGTGACCAAAAGGCCCGCGAATCC
GCACATTTGCACCTGGCACACCAATTGCGACCCAACTCTACCGCCACGCC
CGTGGCGTTCGACCACAGCGCAGCAGCAAGAAGGTATCACTCCTTAAGGG
TGAGTCCGGCCTTACACCCGCCAGAAAGACCCCCACAACTCGCTTTGGGT
CATGCTTACAGCAGACCTTGCCTAGGCAGCGAGGGAACGGAGAGTGTGAA
GAGCACAACATGGAAAATGGCCTGGTCCCAGGTCCCAGAAGGGTTGAAAA
AGGTTTACAGCAGTACGTTATAACCTGCAGGAGTTGCTGTGTGGTAAAAA
ACTACAGACAATCGATCAATCGCTCCAGAAGTTTTTGCAACCGAGCCCAC
AAGAAACATCCTACAATTTCACGGAATCACCCGTTCCTTGGGAGGCCCCC
TCTCTCTTGGCCACTCACGCTGTCTCTGGTTCGCCGTCTTCCCCTGTTTT
TGGCAATCCACCGCAATTTGTGTCCGCTTTCTGCCGATAGCGGTGTTCAA
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:20615..21815-

>mRNA_P-littoralis_Contig144.3.3 ID=mRNA_P-littoralis_Contig144.3.3|Name=mRNA_P-littoralis_Contig144.3.3|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig144:20615..21815- (Pylaiella littoralis U1_48)
ATGCTCTCGTCACGCTTCTTCACTGCCGGCGTTGCCTTAGGTCACCTCCA
TCACCGCCGCTCTCTCACATACCGTTATCATGCGAGTCATCCCACCCCCG
TGTTAGCTTTTTCGCATTCCGTATTGCTCCATAACCAGGAGAGTGCGAAC
ACCAAACGACCCGTCATACGAAAGCTCTCGACGAGATCTTTCCAAAACCA
CCCGTTTCGGCAGTGGTACTCTCGCTGTCTCTGGTTCGCCGTCTTCCCCT
GTTTTTGGCAATCCACCGCAATTTGTGTCCGCTTTCTGCCGATAGCGGTG
TTCAAG
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