mRNA_P-littoralis_Contig1439.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1439.4.1
Unique NamemRNA_P-littoralis_Contig1439.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.130e-44
Identity = 84/94 (89.36%), Postives = 86/94 (91.49%), Query Frame = 3 
Query:  555 MEAFMVLLPAFCALSGASAVSPCLDPTDADYSCEVDEDGLLRLDHCGVTDEDVDGGDLASCLDNAGRELVVSLTLYDNALTTLPAGIFEGLTAL 836
            MEAFMVLLPAFCALSGASAVSPCLDPTDADYSCEVDEDG L L  CG+TDEDVDGGDLASCLDNAG+ELVV L LY NALT LPAGIFEGLTAL
Sbjct:    1 MEAFMVLLPAFCALSGASAVSPCLDPTDADYSCEVDEDGYLYLYDCGITDEDVDGGDLASCLDNAGQELVVELWLYGNALTALPAGIFEGLTAL 94
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BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.240e-23
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 3 
Query:  549 RSMEAFMVLLPAFCALSGASAVSPCLDPTDADYSCEVDEDGLLRLDHCGVTDEDVDGGDLASCLDNAGRELVVSLTLYDNALTTLPAGIFEGLTALETL 845
            RSM+  + +L    AL G S  + CLDPTD DY CE+D +G L L  C + D+DVD GDLA+CLD AGRE V+ L L  N LTTLP G+F  LTA+ETL
Sbjct:   32 RSMKVLLAVLLGPTALLGTSKANSCLDPTDTDYRCEIDAEGTLDLSECLIADDDVDSGDLAACLDAAGRESVIFLDLGRNDLTTLPDGVFLDLTAMETL 130
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BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.260e-23
Identity = 55/102 (53.92%), Postives = 67/102 (65.69%), Query Frame = 3 
Query:  540 TRVRSMEAFMVLLPAFCALSGASAVSPCLDPTDADYSCEVDEDGLLRLDHCGVTDEDVDGGDLASCLDNAGRELVVSLTLYDNALTTLPAGIFEGLTALETL 845
            T  RSM+  + +L    AL   S  + CLDPTD DY CE+D +G L L  C V D+DVD GDLA+CLD AGRE V+ L L  N LTTLP G+F  LT++ETL
Sbjct:   37 TLPRSMKVLLAVLVGLTALLSTSEANSCLDPTDTDYRCEIDAEGTLDLSECLVADDDVDSGDLAACLDAAGRESVIFLDLGRNDLTTLPDGVFLDLTSMETL 138
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BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Match: A0A6H5K2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 8.780e-20
Identity = 52/97 (53.61%), Postives = 62/97 (63.92%), Query Frame = 3 
Query:  555 MEAFMVLLPAFCALSGASAVSPCLDPTDADYSCEVDEDGLLRLDHCGVTDEDVDGGDLASCLDNAGRELVVSLTLYDNALTTLPAGIFEGLTALETL 845
            +E  +++L     L    AV+ CLD TDAD  C++D  G L L  CG TD D D  DLASCL+ AG E + +L LY N LTTLP GIF GLTALETL
Sbjct:    2 LEMTLIILLGLSTLLDTFAVNVCLDSTDADR-CQIDAHGNLILGLCGTTDADFD--DLASCLEAAGPETITTLYLYRNELTTLPEGIFGGLTALETL 95
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BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Match: A0A6H5KAY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.080e-19
Identity = 54/100 (54.00%), Postives = 64/100 (64.00%), Query Frame = 3 
Query:  540 TRVRSMEAFMVLLPAFCALSGASAVSPCLDPTDADYSCEVDEDGLLRLDHCGVTDEDVDGGDLASCLDNAGRELVVSLTLYDNALTTLPAGIFEGLTALE 839
            T  R +E   ++L     L   SAV+ CLD TDAD  CE+D DG L L  CG+TD D D  DLASCL++AG E +  L+L  N LTTLP GIF GLTALE
Sbjct:  113 TMRRLLEMTSIILLVLFTLLDISAVNVCLDTTDADR-CEIDADGQLDLYSCGITDADFD--DLASCLEDAGPEAITYLSLSQNELTTLPEGIFGGLTALE 209
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BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Match: A0A6H5KAC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 6.980e-18
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = 3 
Query:  597 SGASAVSPCLDPTDADYSCEVDEDGLLRLDHCGVTDEDVDGGDLASCLDNAGRELVVSLTLYDNALTTLPAGIFEGLTALETL 845
            +G + VS CLD TDAD  C++D +G L L  CG+ D D D  DLASCL+ AG E + +L L  N LTTLP GIF GLTALETL
Sbjct:    5 AGNNTVSICLDSTDADR-CQIDANGNLSLGLCGIADTDFD--DLASCLEAAGPETITTLYLSVNELTTLPEGIFGGLTALETL 84
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BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 7.370e-18
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 3 
Query:  678 RLDHCGVTDEDVDGGDLASCLDNAGRELVVSLTLYDNALTTLPAGIFEGLTALE 839
            RL+ CG+TDEDVDGGDLASCLDNAGRELVV L L  NALTTLPAGIFEGLT L+
Sbjct:   82 RLNDCGITDEDVDGGDLASCLDNAGRELVVELWLSSNALTTLPAGIFEGLTVLD 135
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BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Match: A0A6H5JSZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.540e-17
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 3 
Query:  555 MEAFMVLLPAFCALSGASAVSPCLDPTDADYSCEVDEDGLLRLDHCGVTDEDVDGGDLASCLDNAGRELVVSLTLYDNALTTLPAGIFEGLTALE 839
            +E  +++L         SAV+ CLD TDAD  C++D +G L L  CG+TD D D  DLASCL+ AG E + +L L  N LTTLP GIF GLTAL+
Sbjct:    2 LEMTLIILLGLSTFLDTSAVNVCLDSTDADR-CQIDANGNLSLGLCGITDADFD--DLASCLEAAGPETITTLYLSHNELTTLPEGIFGGLTALQ 93
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BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.120e-7
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 3 
Query:  594 LSGASAVSPCLDPTDADYSCE--VDEDGLLRLDHCGVTDEDVDGGDLASCLDNAGRELVVSLTL-YDNALTTLPAGIFEGL 827
            +S  + ++PC D T+ DY C+  VD+   + L++C   D D    DL +C ++ G+  + +L L + + LTTLPAG+FEGL
Sbjct:  349 VSPTAGINPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDA--ADLPACFESFGKTDIETLHLTFHDDLTTLPAGVFEGL 427
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BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Match: D7FSR9_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 3.870e-5
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 3 
Query:  675 LRLDHCG--VTDEDVDGGDLASCLDNAGRELVVSLTLYDNALTTLPAGIFEGLTALE 839
            L  D CG  +TD DVD  D+A+C DN GR  V  + L  N L +LPAG+F GL AL+
Sbjct:   62 LTEDSCGDGLTDSDVD--DVAACFDNTGRTSVTKIDLSGNQLASLPAGLFNGLDALQ 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1439.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G7F2_ECTSI3.130e-4489.36Tyrosine kinase specific for activated (GTP-bound)... [more]
A0A6H5KF25_9PHAE1.240e-2355.56Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7X7_ECTSI2.260e-2353.92ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5K2E6_9PHAE8.780e-2053.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY3_9PHAE2.080e-1954.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC1_9PHAE6.980e-1857.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL57_ECTSI7.370e-1883.33Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
A0A6H5JSZ2_9PHAE5.540e-1750.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1V3_9PHAE8.120e-738.27F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FSR9_ECTSI3.870e-550.88Hypothetical leucine rich repeat protein (Partial)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1439contigP-littoralis_Contig1439:10621..12124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7F2
Preferred nameRIPK4
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,LRR_8,Pkinase,Pkinase_Tyr
Model size848
Max annot lvl2759|Eukaryota
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203
Hectar predicted targeting categorysignal peptide
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons4
Evalue1.56e-47
EggNOG OGsCOG0515@1|root,COG4886@1|root,KOG0192@2759|Eukaryota,KOG0619@2759|Eukaryota
EC2.7.11.1
Descriptionregulation of response to stimulus
Cds size294
COG categoryU
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.8079784-CDS-P-littoralis_Contig1439:10620..106961680789676.8079784-CDS-P-littoralis_Contig1439:10620..10696Pylaiella littoralis U1_48CDSP-littoralis_Contig1439 10621..10696 -
1680789676.8208137-CDS-P-littoralis_Contig1439:10892..109881680789676.8208137-CDS-P-littoralis_Contig1439:10892..10988Pylaiella littoralis U1_48CDSP-littoralis_Contig1439 10893..10988 -
1680789676.8356411-CDS-P-littoralis_Contig1439:11275..113391680789676.8356411-CDS-P-littoralis_Contig1439:11275..11339Pylaiella littoralis U1_48CDSP-littoralis_Contig1439 11276..11339 -
1680789676.848559-CDS-P-littoralis_Contig1439:11512..115701680789676.848559-CDS-P-littoralis_Contig1439:11512..11570Pylaiella littoralis U1_48CDSP-littoralis_Contig1439 11513..11570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.8580825-UTR-P-littoralis_Contig1439:11570..121241680789676.8580825-UTR-P-littoralis_Contig1439:11570..12124Pylaiella littoralis U1_48UTRP-littoralis_Contig1439 11571..12124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1439.4.1prot_P-littoralis_Contig1439.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1439 10621..11570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1439.4.1

>prot_P-littoralis_Contig1439.4.1 ID=prot_P-littoralis_Contig1439.4.1|Name=mRNA_P-littoralis_Contig1439.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
MEAFMVLLPAFCALSGASAVSPCLDPTDADYSCEVDEDGLLRLDHCGVTD
EDVDGGDLASCLDNAGRELVVSLTLYDNALTTLPAGIFEGLTALETL*
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mRNA from alignment at P-littoralis_Contig1439:10621..12124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1439.4.1 ID=mRNA_P-littoralis_Contig1439.4.1|Name=mRNA_P-littoralis_Contig1439.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1504bp|location=Sequence derived from alignment at P-littoralis_Contig1439:10621..12124- (Pylaiella littoralis U1_48)
ATAACTTGCCCGTGGGGCTCTCCCCCCTCAGAGTGTTGTGGCGTGGGGCT
TTGTTCCACCCGTGTTGTGTCTTCGTGTTTATGTTCTCCGGAGTATTTCT
TTTTTCAAAAGGGGCACAGCCTTCGATATACGTTTTGAACCCACCAAAAG
GGGCCCGCCCACAGCACTTTTTCGCAAAAAAAAACGTTACTGCAAGTAGT
CTATCGTAGATACTTTGATAAAAGACCCGAGGCCGAAACCTGAAACACAT
AACACACGAAGTTGCAACCTAACGCCTTCAGCAGATGTTTTCAACACACC
CACACTACCCACGATTTTAAGATTCAAGTTCAGCAAAAACTAACTCGCCA
CACGCCATCAGCAGCCAGCCCCAATATTGCACACCGTTTGGCTTGCCTGA
CTGCACCAAGTGGATCACAAGTCTCTGCGTCCCTCTCAGTTTATTTGCTC
CCGCGCGTTCAGCAACACGAGGGCCATATCTTACATCTCACTTTTCCGCT
GCTGTATGACGCAATGTTCTCCCCCGAATCGAGCAGCTCACGCGGGTTCG
GAGCATGGAGGCATTCATGGTCCTTCTGCCGGCTTTCTGCGCCTTGTCTG
GCGCATCGGCAGGTAGGTGGTGCTACCAGGAATTGAATTGTTCGCTTCGG
TCATCATACGTGGGTACGATCTGGTGGTGCGATGCCGTGTCGGCTGCGAA
CTAGCGGTTCTAGCAAACTCGATCCTGTTCCAAAGCTTGGAACAACCCTT
CGTCGCCCCCGTTTTGCGTGCTCTGTTCGTTGCAGTTAGTCCGTGCCTCG
ATCCTACCGACGCCGACTACAGCTGTGAAGTCGATGAAGACGGACTTCTG
TGAGTCTGCCTCTGGCTCTTACGCTGCGAAGACCACAATTGAGATGTCGC
TGGCATGATTACATTGTCTGTAATCGGCGTGGACGGATATTAAACGCTTG
AGCTGGCTTAGCGAATGCCTTGCAGTATCATTGGATTCCACTTTGCCTCT
TTTAAATACGTTTCGTCAGCATTTTACAGCATGTTCGCGAGGCGTTCCCA
CCGCCCTAGAATTGCAGTGCGTCAACGCACCACGGACTGATCAAGACATG
ACCCTCCAACTGTTTCCTTGTCCGAACTTACCGTAGGAGACTCGATCACT
GCGGTGTAACTGATGAAGACGTCGACGGTGGTGATCTCGCATCATGCCTG
GACAACGCAGGACGAGAACTCGTCGTGAGCCTGTGAGTGCCATAATTTGC
GGAATGGTCCGTTAACCATATGCTTGACGAATTGCTTTACTTCCAGCACT
GGATGAATGACTCCCGTCATGTTGTGCATGGGTGAGCTAGTCGTGGCGTG
TACGGCAGTGCTGATGAATTTTCCCGGCTTACTGAGGTGTCTTGTGTGCT
CCGTTGGTCGCTTCCCCGACACCGGAAGGACCCTGTATGACAACGCGCTC
ACCACCTTGCCGGCGGGGATCTTCGAGGGCTTGACGGCGCTGGAAACTCT
GTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1439:10621..12124-

>mRNA_P-littoralis_Contig1439.4.1 ID=mRNA_P-littoralis_Contig1439.4.1|Name=mRNA_P-littoralis_Contig1439.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig1439:10621..12124- (Pylaiella littoralis U1_48)
ATGGAGGCATTCATGGTCCTTCTGCCGGCTTTCTGCGCCTTGTCTGGCGC
ATCGGCAGTTAGTCCGTGCCTCGATCCTACCGACGCCGACTACAGCTGTG
AAGTCGATGAAGACGGACTTCTGAGACTCGATCACTGCGGTGTAACTGAT
GAAGACGTCGACGGTGGTGATCTCGCATCATGCCTGGACAACGCAGGACG
AGAACTCGTCGTGAGCCTGACCCTGTATGACAACGCGCTCACCACCTTGC
CGGCGGGGATCTTCGAGGGCTTGACGGCGCTGGAAACTCTGTAA
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