mRNA_P-littoralis_Contig1439.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1439.3.1
Unique NamemRNA_P-littoralis_Contig1439.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1439.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1439contigP-littoralis_Contig1439:5451..6199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.763404-CDS-P-littoralis_Contig1439:5451..56881680789676.763404-CDS-P-littoralis_Contig1439:5451..5688Pylaiella littoralis U1_48CDSP-littoralis_Contig1439 5452..5688 -
1680789676.7743454-CDS-P-littoralis_Contig1439:6133..61991680789676.7743454-CDS-P-littoralis_Contig1439:6133..6199Pylaiella littoralis U1_48CDSP-littoralis_Contig1439 6134..6199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1439.3.1prot_P-littoralis_Contig1439.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1439 5452..6199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1439.3.1

>prot_P-littoralis_Contig1439.3.1 ID=prot_P-littoralis_Contig1439.3.1|Name=mRNA_P-littoralis_Contig1439.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
LYDNALTTLPAGIFEGLTALEVGDLRGLDGTGTSVRCCTTRGCLPVEIET
VQEGTPNISNISSGMDILVCCESSIVCPSKTKRAIVMRNLQTMLSCESMS
L
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mRNA from alignment at P-littoralis_Contig1439:5451..6199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1439.3.1 ID=mRNA_P-littoralis_Contig1439.3.1|Name=mRNA_P-littoralis_Contig1439.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=749bp|location=Sequence derived from alignment at P-littoralis_Contig1439:5451..6199- (Pylaiella littoralis U1_48)
CTGTATGACAACGCGCTCACCACCCTGCCGGCGGGGATCTTCGAGGGCTT
GACGGCGCTGGAAGTTCTGTGAGTTGCTGTACGACACGGGGGTGTTCTTT
TGCGTTTTATAGAGCGAACACGAAATTTTAACGAGTGTTGTCGGTGCACG
TTTGGTTGCTATGGAGAGGACGTCCGCACAATTTTTCCTTTGGGCTGGGC
AGTCGCATTTGCCACGTGATGGCTTGATTGGAGAGCCCTGCGATGCCTAG
ACCGTACCCGATCTCCCTCTCTGACCCAGTGCAGCTGAGGTCCAGCCGCC
GGCTTGAATGATCGATGCCGTCGGTTGCGAGTGGTCGGTTCAACCATCAG
TGTATCCGAGCGTCGTCCGTGCACATGGGTGGGCTGGTCGTGGCGTGTAC
GGCAGTGCCGATGACTTTTCCCGGCTTACTGAGGTGTCTTGTGTGCTCCG
TCGGTCGCTTCCCCGACACCGGAACGTGGCTGTATGACAACGCGCTCATC
ACCCTGTCGGCGGGGATCTTCGAGGGCTTGACGGCACTGGAACTTCTGTA
CGTTGCTGTACGACACGGGGATGCTTGCCCGTGGAGATCGAGACTGTTCA
AGAGGGAACACCAAACATCAGCAATATTTCCTCTGGAATGGACATTCTAG
TATGCTGTGAAAGCTCGATTGTGTGTCCTTCGAAAACGAAACGCGCCATT
GTCATGCGAAATCTTCAGACCATGCTCTCATGCGAAAGCATGTCGCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1439:5451..6199-

>mRNA_P-littoralis_Contig1439.3.1 ID=mRNA_P-littoralis_Contig1439.3.1|Name=mRNA_P-littoralis_Contig1439.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig1439:5451..6199- (Pylaiella littoralis U1_48)
CTGTATGACAACGCGCTCACCACCCTGCCGGCGGGGATCTTCGAGGGCTT
GACGGCGCTGGAAGTTGGGGATCTTCGAGGGCTTGACGGCACTGGAACTT
CTGTACGTTGCTGTACGACACGGGGATGCTTGCCCGTGGAGATCGAGACT
GTTCAAGAGGGAACACCAAACATCAGCAATATTTCCTCTGGAATGGACAT
TCTAGTATGCTGTGAAAGCTCGATTGTGTGTCCTTCGAAAACGAAACGCG
CCATTGTCATGCGAAATCTTCAGACCATGCTCTCATGCGAAAGCATGTCG
CTT
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