mRNA_P-littoralis_Contig1438.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1438.7.1
Unique NamemRNA_P-littoralis_Contig1438.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Match: A0A2D8LGP4_9FLAO (OMP_b-brl domain-containing protein n=2 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8LGP4_9FLAO)

HSP 1 Score: 337 bits (865), Expect = 4.460e-108
Identity = 220/437 (50.34%), Postives = 252/437 (57.67%), Query Frame = 3
Query:   21 SIILIL--AILLTSCGAYFNQPEAPQDARIAEKQT*PKH*KHFRCPKNP*WLGYTTLKIRLGNIKM*KTEAPLVRPLPRSYNHSY*SLRR*QVV*AHRT*K-FRELTK*TEYYTYHTRRISSLPK*TCQTIKSVAICGNFTRRRCDFVRF*HFDWWGRRAILWYRS----------FFTVQTRPYYSIPAGNLNVNWRSAQNR*CFKNHSVTRC*CRT---V*ICKLSAFA*SGNRIY-------KK*ACSNGGSGSNRKAVSILILEGLKDELWATENGPEKDQELIDAYDLETAVENATELYEREYQTQTFRNKVSGGMGIAFIDGDYTTNVIDFMGSLGYSYQLIPELGVGFQAQIFKLNATTDNIKWWLSESLQLTAFVYTILPNDKLSPFIYGGPGLLLFADDTEEEHLERWDAFLNFRLALDSNTGLPIVF 1262
            +I+L L  AILLTSCGAYFNQPEAPQDARIAEK    K  + F  PK P  +G    K + G  K  +  +     + +             ++ A    K FR + +       + R I         T +   +  N   +R   + F      G   ++ Y S          +F       Y      + +   S       K  +V++        V + K   F     R+        K          +  KAVSILILEGLKD+LWATENGPEKDQELIDAYDLETAVENATELYEREYQTQTFRNKVSGGMGIAFIDGDYTTNVIDFMGSLGYSYQLIPELGVGFQAQIFKLNATTDNIKWWLSESLQL+   YTILPNDKLSPFIYGGPGLLLFADDTEEEHLERWDAF      L +  GL   F
Sbjct:    6 TIVLFLSWAILLTSCGAYFNQPEAPQDARIAEKTDVTKTLEAFPLPKEPIVVGVYNFKDQTGQYKNVENGSTFSTAVTQGATTI--------LIKALEDSKWFRPIERENLGNLLNERNIIRT------TREEYRVSQNEPAKRLSPLLFAGILLEG--GVISYDSNILTGGVGARYFGTGASSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNF----QRLLEVETGFTKNEPAQMAVQEAIEKAVSILILEGLKDDLWATENGPEKDQELIDAYDLETAVENATELYEREYQTQTFRNKVSGGMGIAFIDGDYTTNVIDFMGSLGYSYQLIPELGVGFQAQIFKLNATTDNIKWWLSESLQLS---YTILPNDKLSPFIYGGPGLLLFADDTEEEHLERWDAFFK----LQAGAGLEYRF 415          
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Match: A0A6G6GQ24_9FLAO (Outer membrane beta-barrel protein n=1 Tax=Flavobacteriaceae bacterium RR4-40 TaxID=2744027 RepID=A0A6G6GQ24_9FLAO)

HSP 1 Score: 302 bits (773), Expect = 2.820e-94
Identity = 157/183 (85.79%), Postives = 165/183 (90.16%), Query Frame = 1
Query:  250 GATTILIKALEDSKWFRPIERENLGNLLNERNIIRTTREEYRVSQNEPAKRLSPLLFAGILLEGGVISYDSNILTGGVGARYFGTGASSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQMAVQEAIEKRCLF*SLKG*KMNCGQQKTDPK 798
            GATTILIKALEDS+WFRPIERENLGNLLNERNIIRTTR+EYR +QNEP KR+SPLLFAGILLEGGVISYDSNILTGGVGARYFG G SSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQ+AVQEAIEK      L+G K      K+ P+
Sbjct:   85 GATTILIKALEDSQWFRPIERENLGNLLNERNIIRTTRDEYRTTQNEPPKRISPLLFAGILLEGGVISYDSNILTGGVGARYFGAGTSSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQLAVQEAIEKAVEILILEGLKDKLWATKSGPE 267          
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Match: A0A2D7VQ51_9FLAO (OMP_b-brl domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D7VQ51_9FLAO)

HSP 1 Score: 290 bits (742), Expect = 1.200e-89
Identity = 151/186 (81.18%), Postives = 162/186 (87.10%), Query Frame = 1
Query:  250 GATTILIKALEDSKWFRPIERENLGNLLNERNIIRTTREEYRVSQNEPAKRLSPLLFAGILLEGGVISYDSNILTGGVGARYFGTGASSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQMAVQEAIEKRCLF*SLKG*KMNCGQQKTDPKKTK 807
            GATTILIKALEDSKWF PIERENLGNLLNERNIIRTTR+EYR + + P +RL+PLLFAGILLEGGV+SYDSNILTGGVGARYFG G SSQYRQDRITVYLRA+STSTGEVLKTVN SKTILSQGVDVGLF+YVNFQRLLEVETGFTKNEP+QMAVQEAIEK      L+G K N       P+K K
Sbjct:   85 GATTILIKALEDSKWFLPIERENLGNLLNERNIIRTTRDEYRNATDNPPQRLNPLLFAGILLEGGVVSYDSNILTGGVGARYFGVGGSSQYRQDRITVYLRAVSTSTGEVLKTVNASKTILSQGVDVGLFRYVNFQRLLEVETGFTKNEPSQMAVQEAIEKAVELLILEGIKDNLWGTLEGPEKDK 270          
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Match: A0A2D9N7G0_9FLAO (OMP_b-brl domain-containing protein n=2 Tax=Altibacter TaxID=1535231 RepID=A0A2D9N7G0_9FLAO)

HSP 1 Score: 285 bits (728), Expect = 1.280e-87
Identity = 148/186 (79.57%), Postives = 158/186 (84.95%), Query Frame = 1
Query:  250 GATTILIKALEDSKWFRPIERENLGNLLNERNIIRTTREEYRVSQNEPAKRLSPLLFAGILLEGGVISYDSNILTGGVGARYFGTGASSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQMAVQEAIEKRCLF*SLKG*KMNCGQQKTDPKKTK 807
            GATTILIKALEDSKWF PIERENL NLLNERNIIRTTR+EYR + N+P +RL+PLLFAG+LLEGGVISYDSNILTGGVGARYFG G SSQYRQDRITVYLRA+STSTGEVLKTVNVSKTILSQ VDVGLF+YVNFQ+LLEVETGFTKNEP QMAVQEAIEK       +G K      K    K K
Sbjct:   81 GATTILIKALEDSKWFTPIERENLSNLLNERNIIRTTRDEYRANPNDPPQRLNPLLFAGVLLEGGVISYDSNILTGGVGARYFGVGGSSQYRQDRITVYLRAVSTSTGEVLKTVNVSKTILSQAVDVGLFRYVNFQKLLEVETGFTKNEPTQMAVQEAIEKAVEVLIYEGIKDGLWSTKEGEAKDK 266          
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Match: A0A7G8PR29_9FLAO (Curli production component CsgG n=1 Tax=Constantimarinum furrinae TaxID=2562285 RepID=A0A7G8PR29_9FLAO)

HSP 1 Score: 285 bits (728), Expect = 1.520e-87
Identity = 144/160 (90.00%), Postives = 153/160 (95.62%), Query Frame = 1
Query:  250 GATTILIKALEDSKWFRPIERENLGNLLNERNIIRTTREEYRVSQNEPAKRLSPLLFAGILLEGGVISYDSNILTGGVGARYFGTGASSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQMAVQEAIE 729
            GATTILIKALEDSKWFRPIERENL NLLNERNIIRTTR+EYR S ++P +RL+PLLFAGILLEGGVISYD+N++TGGVGARYFGTG SSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQ VDVG+FKYVNFQRLLEVETGFTKNEP QMAVQEAIE
Sbjct:   85 GATTILIKALEDSKWFRPIERENLNNLLNERNIIRTTRDEYRKSADDPVQRLNPLLFAGILLEGGVISYDTNLMTGGVGARYFGTGGSSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQSVDVGIFKYVNFQRLLEVETGFTKNEPTQMAVQEAIE 244          
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Match: A0A6G6GPZ5_9FLAO (Outer membrane beta-barrel protein n=1 Tax=Flavobacteriaceae bacterium RR4-40 TaxID=2744027 RepID=A0A6G6GPZ5_9FLAO)

HSP 1 Score: 283 bits (725), Expect = 4.010e-87
Identity = 149/186 (80.11%), Postives = 159/186 (85.48%), Query Frame = 1
Query:  250 GATTILIKALEDSKWFRPIERENLGNLLNERNIIRTTREEYRVSQNEPAKRLSPLLFAGILLEGGVISYDSNILTGGVGARYFGTGASSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQMAVQEAIEKRCLF*SLKG*KMNCGQQKTDPKKTK 807
            GATTILIKALEDSKWF PIERENL NLLNERNIIRTTR+EYR S +   +RL PLLFAGILLEGGVISYDSNILTGGVGARYFG G SSQYRQDRITVYLRA+STS+GEVLKTVN SKTILSQGVDVGLF+YVNFQRLLEVETGFTKNEP+QMAVQEAIEK      L+G K      +  P+K K
Sbjct:   85 GATTILIKALEDSKWFTPIERENLANLLNERNIIRTTRDEYRNSNDTAPQRLRPLLFAGILLEGGVISYDSNILTGGVGARYFGVGGSSQYRQDRITVYLRAVSTSSGEVLKTVNASKTILSQGVDVGLFRYVNFQRLLEVETGFTKNEPSQMAVQEAIEKAVELLILEGIKDGLWATEEGPEKDK 270          
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Match: A0A7Y3MQB9_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y3MQB9_9FLAO)

HSP 1 Score: 281 bits (719), Expect = 3.230e-86
Identity = 144/184 (78.26%), Postives = 160/184 (86.96%), Query Frame = 1
Query:  250 GATTILIKALEDSKWFRPIERENLGNLLNERNIIRTTREEYRVSQNEPAKRLSPLLFAGILLEGGVISYDSNILTGGVGARYFGTGASSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQMAVQEAIEKRCLF*SLKG*KMNCGQQKTDPKK 801
            GATTILIKALEDSKWFRPIERENL NLLNERNIIRTTR+EYR + N   +RL PLLFAG+LLEGGVISYDSNILTGG GARYFG GAS++YRQDRIT+YLRA+STSTGEVLKTVNVSKTILSQGVDVG+F++VNFQRLLEVETGFTKNEPAQ+AVQEAIEK      ++G K +  Q     +K
Sbjct:   85 GATTILIKALEDSKWFRPIERENLSNLLNERNIIRTTRDEYRANPNATPQRLRPLLFAGMLLEGGVISYDSNILTGGAGARYFGAGASTEYRQDRITIYLRAVSTSTGEVLKTVNVSKTILSQGVDVGIFRFVNFQRLLEVETGFTKNEPAQLAVQEAIEKAVELLIIEGIKDDLWQSAEGEEK 268          
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Match: A0A661Y2K5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661Y2K5_9BACT)

HSP 1 Score: 278 bits (711), Expect = 4.180e-86
Identity = 139/186 (74.73%), Postives = 158/186 (84.95%), Query Frame = 1
Query:  250 GATTILIKALEDSKWFRPIERENLGNLLNERNIIRTTREEYRVSQNEPAKRLSPLLFAGILLEGGVISYDSNILTGGVGARYFGTGASSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQMAVQEAIEKRCLF*SLKG*KMNCGQQKTDPKKTK 807
            GATTILIKALEDSKWFRPIERENL NL+NERNIIRTTR+EYR +  +P +RL+PLLFA ILLEGG+ISYD+N+LTGG GARYFG G SSQYRQDRIT+YLRA+STSTGEVLKTVNVSKTILSQ VD+G+F++VNFQRLLEVETGFTKNEP Q+A+QEAIEK       +G K      K  P+K K
Sbjct:    3 GATTILIKALEDSKWFRPIERENLANLMNERNIIRTTRDEYRSASGDPPQRLNPLLFANILLEGGIISYDTNVLTGGAGARYFGAGGSSQYRQDRITIYLRAVSTSTGEVLKTVNVSKTILSQAVDIGIFRFVNFQRLLEVETGFTKNEPTQLAIQEAIEKAVELLIYEGIKDKLWFSKEGPEKDK 188          
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Match: A0A2D8LGQ9_9FLAO (OMP_b-brl domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8LGQ9_9FLAO)

HSP 1 Score: 278 bits (711), Expect = 4.490e-85
Identity = 146/186 (78.49%), Postives = 159/186 (85.48%), Query Frame = 1
Query:  250 GATTILIKALEDSKWFRPIERENLGNLLNERNIIRTTREEYRVSQNEPAKRLSPLLFAGILLEGGVISYDSNILTGGVGARYFGTGASSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQMAVQEAIEKRCLF*SLKG*KMNCGQQKTDPKKTK 807
            GATTILIKALE+S+WFRPIERENLGNLLNERNIIRTTR EY    N   +RL+PLLFAGI+LEGG+ISYD+NILTGGVGARYFG GASSQYRQDRITVYLRA+STSTGEVLKTVN SKTILSQGVDVGLF++VNFQRLLEVETGFTKNEP+QMAVQEAIEK      L+G K         P+K K
Sbjct:   85 GATTILIKALEESRWFRPIERENLGNLLNERNIIRTTRNEY----NSKPERLTPLLFAGIILEGGIISYDTNILTGGVGARYFGAGASSQYRQDRITVYLRAVSTSTGEVLKTVNASKTILSQGVDVGLFRFVNFQRLLEVETGFTKNEPSQMAVQEAIEKAVELLILEGVKDKLWGTSEGPEKDK 266          
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Match: A0A2E5B0F2_9FLAO (Uncharacterized protein n=2 Tax=Aequorivita sp. TaxID=1872390 RepID=A0A2E5B0F2_9FLAO)

HSP 1 Score: 278 bits (711), Expect = 4.890e-85
Identity = 143/186 (76.88%), Postives = 159/186 (85.48%), Query Frame = 1
Query:  250 GATTILIKALEDSKWFRPIERENLGNLLNERNIIRTTREEYRVSQNEPAKRLSPLLFAGILLEGGVISYDSNILTGGVGARYFGTGASSQYRQDRITVYLRAISTSTGEVLKTVNVSKTILSQGVDVGLFKYVNFQRLLEVETGFTKNEPAQMAVQEAIEKRCLF*SLKG*KMNCGQQKTDPKKTK 807
            GATTILIKALEDSKWFRPIEREN+ NLLNERNIIR+TREEYR + ++   RL+PLLFAG+LLEGG++SYDSNILTGG GARYFGTGAS+QYRQDRITVYLRA+ST+TGEVLKTV VSKTILSQ VDV LFKYVNFQRLLEVETGFTKNEPAQMAVQEAIEK      ++G K      +   +K K
Sbjct:   85 GATTILIKALEDSKWFRPIERENISNLLNERNIIRSTREEYRKADDQTPTRLTPLLFAGVLLEGGIVSYDSNILTGGAGARYFGTGASTQYRQDRITVYLRAVSTNTGEVLKTVYVSKTILSQAVDVSLFKYVNFQRLLEVETGFTKNEPAQMAVQEAIEKSVEMLIVEGIKDRLWSTRDGEEKNK 270          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1438.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LGP4_9FLAO4.460e-10850.34OMP_b-brl domain-containing protein n=2 Tax=Flavob... [more]
A0A6G6GQ24_9FLAO2.820e-9485.79Outer membrane beta-barrel protein n=1 Tax=Flavoba... [more]
A0A2D7VQ51_9FLAO1.200e-8981.18OMP_b-brl domain-containing protein n=1 Tax=Flavob... [more]
A0A2D9N7G0_9FLAO1.280e-8779.57OMP_b-brl domain-containing protein n=2 Tax=Altiba... [more]
A0A7G8PR29_9FLAO1.520e-8790.00Curli production component CsgG n=1 Tax=Constantim... [more]
A0A6G6GPZ5_9FLAO4.010e-8780.11Outer membrane beta-barrel protein n=1 Tax=Flavoba... [more]
A0A7Y3MQB9_9FLAO3.230e-8678.26Uncharacterized protein n=1 Tax=Flavobacteriaceae ... [more]
A0A661Y2K5_9BACT4.180e-8674.73Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]
A0A2D8LGQ9_9FLAO4.490e-8578.49OMP_b-brl domain-containing protein n=1 Tax=Flavob... [more]
A0A2E5B0F2_9FLAO4.890e-8576.88Uncharacterized protein n=2 Tax=Aequorivita sp. Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1438contigP-littoralis_Contig1438:14793..16206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1223410.KN050846_gene2666
Preferred namecsgG
PFAMsCsgG,OMP_b-brl
Model size1414
Max annot lvl976|Bacteroidetes
KEGG koko:K06214
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.04e-34
EggNOG OGsCOG1462@1|root,COG1462@2|Bacteria,4NEH1@976|Bacteroidetes,1HXH5@117743|Flavobacteriia
DescriptionCurli production assembly
Cds size399
COG categoryM
BRITEko00000,ko02044
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.6463106-UTR-P-littoralis_Contig1438:14792..157031680789676.6463106-UTR-P-littoralis_Contig1438:14792..15703Pylaiella littoralis U1_48UTRP-littoralis_Contig1438 14793..15703 +
1680789676.6717756-UTR-P-littoralis_Contig1438:16102..162061680789676.6717756-UTR-P-littoralis_Contig1438:16102..16206Pylaiella littoralis U1_48UTRP-littoralis_Contig1438 16103..16206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.6601124-CDS-P-littoralis_Contig1438:15703..161021680789676.6601124-CDS-P-littoralis_Contig1438:15703..16102Pylaiella littoralis U1_48CDSP-littoralis_Contig1438 15704..16102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1438.7.1prot_P-littoralis_Contig1438.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1438 15704..16102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1438.7.1

>prot_P-littoralis_Contig1438.7.1 ID=prot_P-littoralis_Contig1438.7.1|Name=mRNA_P-littoralis_Contig1438.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MGIAFIDGDYTTNVIDFMGSLGYSYQLIPELGVGFQAQIFKLNATTDNIK
WWLSESLQLTAFVYTILPNDKLSPFIYGGPGLLLFADDTEEEHLERWDAF
LNFRLALDSNTGLPIVFHWCCKQTGTVSFLIK*
back to top

mRNA from alignment at P-littoralis_Contig1438:14793..16206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1438.7.1 ID=mRNA_P-littoralis_Contig1438.7.1|Name=mRNA_P-littoralis_Contig1438.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1414bp|location=Sequence derived from alignment at P-littoralis_Contig1438:14793..16206+ (Pylaiella littoralis U1_48)
ATGAGAGCGACCCTTACCATAGTATTATTCTTATCCTGGCGATTTTGCTT ACAAGTTGCGGTGCATATTTTAATCAGCCCGAAGCACCCCAAGATGCCCG AATTGCTGAAAAACAGACGTAACCAAAACATTAGAAGCATTTCCGCTGCC CAAAGAACCCATAGTGGTTGGGGTATACAACTTTAAAGATCAGACTGGGC AATATAAAAATGTAGAAAACGGAAGCACCTTTAGTACGGCCGTTACCCAG GAGCTACAACCATTCTTATTAAAGCCTTAGAAGATAGCAAGTGGTTTAGG CCCATAGAACGTGAAAATTTAGGGAACTTACTAAATGAACGGAATATTAT ACGTACCACACGCGAAGAATATCGAGTCTCCCAAAATGAACCTGCCAAAC GATTAAGTCCGTTGCTATTTGCGGGAATTTTACTAGAAGGAGGTGTGATT TCGTACGATTCTAACATTTTGACTGGTGGGGTAGGCGCGCGATACTTTGG TACAGGAGCTTCTTCACAGTACAGACAAGACCGTATTACAGTATACCTGC GGGCAATCTCAACGTCAACTGGCGAAGTGCTCAAAACCGTTAATGTTTCA AAAACCATTCTGTCACAAGGTGTTGATGTAGGACTGTTTAAATATGTAAA CTTTCAGCGTTTGCTTGAAGTGGAAACAGGATTTACAAAAAATGAGCCTG CTCAAATGGCGGTTCAGGAAGCAATCGAAAAGCGGTGTCTATTTTAATCC TTGAAGGGTTAAAAGATGAATTGTGGGCAACAGAAAACGGACCCGAAAAA GACCAAGAATTAATAGATGCCTATGATTTAGAAACAGCGGTAGAAAATGC CACCGAACTGTATGAACGTGAATACCAAACCCAAACCTTTCGCAACAAGG TGAGTGGCGGTATGGGTATTGCGTTTATAGATGGCGATTATACCACAAAT GTCATTGATTTTATGGGGAGTTTGGGTTATAGCTATCAACTTATCCCAGA ATTAGGTGTGGGGTTTCAAGCGCAGATATTCAAACTGAATGCAACTACTG ATAATATTAAATGGTGGTTGAGCGAAAGCTTACAGCTTACAGCTTTCGTA TATACCATACTTCCTAACGATAAGCTTTCTCCTTTTATATATGGCGGCCC CGGCTTGCTGTTGTTTGCAGATGATACAGAAGAAGAACACTTAGAACGTT GGGATGCCTTTTTAAACTTCAGGCTGGCGCTGGACTCGAATACAGGTTTA CCGATCGTATTTCATTGGTGTTGCAAGCAGACTGGAACAGTGTCTTTTCT GATAAAGTAGACAATTTTGTAGGCGGAAGACGAAACGACTTTTATTATAA CGTAGGCGTTGGAATTAATTATCATTTCGGTGCGGGTCGTAACAAACCTA ATAAACCCATTAAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1438:14793..16206+

>mRNA_P-littoralis_Contig1438.7.1 ID=mRNA_P-littoralis_Contig1438.7.1|Name=mRNA_P-littoralis_Contig1438.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig1438:14793..16206+ (Pylaiella littoralis U1_48)
ATGGGTATTGCGTTTATAGATGGCGATTATACCACAAATGTCATTGATTT
TATGGGGAGTTTGGGTTATAGCTATCAACTTATCCCAGAATTAGGTGTGG
GGTTTCAAGCGCAGATATTCAAACTGAATGCAACTACTGATAATATTAAA
TGGTGGTTGAGCGAAAGCTTACAGCTTACAGCTTTCGTATATACCATACT
TCCTAACGATAAGCTTTCTCCTTTTATATATGGCGGCCCCGGCTTGCTGT
TGTTTGCAGATGATACAGAAGAAGAACACTTAGAACGTTGGGATGCCTTT
TTAAACTTCAGGCTGGCGCTGGACTCGAATACAGGTTTACCGATCGTATT
TCATTGGTGTTGCAAGCAGACTGGAACAGTGTCTTTTCTGATAAAGTAG
back to top