mRNA_P-littoralis_Contig1437.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1437.2.1
Unique NamemRNA_P-littoralis_Contig1437.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 5.160e-35
Identity = 61/92 (66.30%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 SRYHPECNTIERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIRKWARILWLYVEAYATGLDGNMQYRDLKKWTSHRSFTDRVDAVL 279
            ++YHPE N IER WG++K+IERRVCDY V SLL RLP TLS+++LSL RKWAR+ WLY+ AY+ GL+G +Q RDLKKWT+HRS TD  D VL
Sbjct:  376 AKYHPELNAIERFWGYTKSIERRVCDYSVLSLLARLPMTLSTVTLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 467
[Close]
BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.060e-34
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 SRYHPECNTIERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIRKWARILWLYVEAYATGLDGNMQYRDLKKWTSHRSFTDRVDAVL 279
            ++YHPE N IER WG++K+IERRVCDY V SLL RLP TLS++SLSL RKWAR+ WLY+ AY+ GL+G +Q RDLKKWT+HRS TD  D VL
Sbjct: 1017 AKYHPELNAIERFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 1108
[Close]
BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.330e-34
Identity = 61/92 (66.30%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 SRYHPECNTIERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIRKWARILWLYVEAYATGLDGNMQYRDLKKWTSHRSFTDRVDAVL 279
            ++YHPE N I+R WG++K+IERRVCDY V SLL RLP TLS++SLSL RKWAR+ WLY+ AY+ GL+G +Q RDLKKWT+HRS TD  D VL
Sbjct:  569 AKYHPELNAIQRFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 660
[Close]
BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.390e-30
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:   31 IERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIRKWARILWLYVEAYATGLDGNMQYRDLKKWTSHRSFTDRVDAVL 279
             +R WG++K+IERRVCDY V SLL RLP TLS++SLSL RKWAR+ WLY+ AY+ GL+G +Q RDLKKWT+HRS TD  D VL
Sbjct:  255 FQRFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 337
[Close]
BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.740e-24
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    4 SRYHPECNTIERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIRKWARILWLYVEAYATGLDGNMQYRDLKKWTSHRSFTDRVDAVL 279
            ++YHPE N IER WG+ K + R  C+Y +K +LK LP  LS + L  +R W+R+ WLY+EAY  GL   ++ RDLKKW SHRS T+R D+V+
Sbjct: 1208 AKYHPELNAIERYWGYVKHLLRLHCEYSLKHMLKILPGALSGVPLRFMRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTERGDSVV 1299
[Close]
BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Match: A0A6H5K4S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 6.840e-24
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    4 SRYHPECNTIERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIRKWARILWLYVEAYATGLDGNMQYRDLKKWTSHRSFTDRVDAVL 279
            ++YHPE N IER WG+ K + R  C+Y +  +L+ LP  LS + L  +R W+R+ WLY+EAY  GL   ++ RDLKKW SHRS T+R D+V+
Sbjct:  159 AKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTERGDSVV 250
[Close]
BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 7.340e-24
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    4 SRYHPECNTIERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIRKWARILWLYVEAYATGLDGNMQYRDLKKWTSHRSFTDRVDAVL 279
            ++YHPE N IER WG++K I R  C+Y +  +L+ LP  LS + L  +R W+R+ WLY+EAY  GL   ++ RDLKKW SHRS T+R D+V+
Sbjct:  366 AKYHPELNAIERYWGYAKHILRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTERGDSVV 457
[Close]
BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.300e-23
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    4 SRYHPECNTIERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIRKWARILWLYVEAYATGLDGNMQYRDLKKWTSHRSFTDRVDAVL 279
            ++YHPE N IER WG+ K + R  C+Y +  +L+ LP  LS + L  +R W+R+ WLY+EAY  GL   ++ RDLKKW SHRS T+R D+V+
Sbjct:  799 AKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTERGDSVV 890
[Close]
BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Match: A0A6H5KDG4_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.360e-23
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    4 SRYHPECNTIERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIRKWARILWLYVEAYATGLDGNMQYRDLKKWTSHRSFTDRVDAVL 279
            ++YHPE N IER WG+ K + R  C+Y +  +L+ LP  LS + L  +R W+R+ WLY+EAY  GL   ++ RDLKKW SHRS T+R D+V+
Sbjct: 1178 AKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTERGDSVV 1269
[Close]
BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.260e-22
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    4 SRYHPECNTIERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIRKWARILWLYVEAYATG 198
            ++YHPE N IER WG++K+IERRVCDY V SLL RLP TLS++SLSL RKWAR+ WLY+ AY+ G
Sbjct:  452 AKYHPELNAIERFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHG 516
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1437.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5K7K1_9PHAE5.160e-3566.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7W4_9PHAE1.060e-3467.39Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M3_9PHAE2.330e-3466.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8V9_9PHAE7.390e-3066.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ42_9PHAE6.740e-2451.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4S4_9PHAE6.840e-2448.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT56_9PHAE7.340e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K659_9PHAE4.300e-2348.91Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDG4_9PHAE4.360e-2348.91Uncharacterized protein n=6 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K344_9PHAE4.260e-2267.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1437contigP-littoralis_Contig1437:9667..9945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog588596.U9UEZ3
Model size279
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.07e-14
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.3529475-CDS-P-littoralis_Contig1437:9666..99451680789676.3529475-CDS-P-littoralis_Contig1437:9666..9945Pylaiella littoralis U1_48CDSP-littoralis_Contig1437 9667..9945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1437.2.1prot_P-littoralis_Contig1437.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1437 9667..9945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1437.2.1

>prot_P-littoralis_Contig1437.2.1 ID=prot_P-littoralis_Contig1437.2.1|Name=mRNA_P-littoralis_Contig1437.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
FSRYHPECNTIERVWGHSKAIERRVCDYFVKSLLKRLPATLSSMSLSLIR
KWARILWLYVEAYATGLDGNMQYRDLKKWTSHRSFTDRVDAVL
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mRNA from alignment at P-littoralis_Contig1437:9667..9945+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1437.2.1 ID=mRNA_P-littoralis_Contig1437.2.1|Name=mRNA_P-littoralis_Contig1437.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig1437:9667..9945+ (Pylaiella littoralis U1_48)
TTCTCCAGGTATCACCCGGAGTGCAACACCATCGAGAGAGTCTGGGGGCA
CTCTAAGGCCATCGAACGCCGGGTGTGCGATTATTTCGTCAAGAGTCTTC
TAAAACGACTCCCTGCCACCCTTAGCTCCATGTCTCTGTCGCTCATTCGC
AAGTGGGCCCGGATTTTGTGGCTCTATGTTGAGGCGTATGCCACGGGGCT
CGACGGTAACATGCAATACAGAGACCTAAAGAAGTGGACGAGCCACCGCT
CATTTACTGATCGGGTTGATGCCGTGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1437:9667..9945+

>mRNA_P-littoralis_Contig1437.2.1 ID=mRNA_P-littoralis_Contig1437.2.1|Name=mRNA_P-littoralis_Contig1437.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig1437:9667..9945+ (Pylaiella littoralis U1_48)
TTCTCCAGGTATCACCCGGAGTGCAACACCATCGAGAGAGTCTGGGGGCA
CTCTAAGGCCATCGAACGCCGGGTGTGCGATTATTTCGTCAAGAGTCTTC
TAAAACGACTCCCTGCCACCCTTAGCTCCATGTCTCTGTCGCTCATTCGC
AAGTGGGCCCGGATTTTGTGGCTCTATGTTGAGGCGTATGCCACGGGGCT
CGACGGTAACATGCAATACAGAGACCTAAAGAAGTGGACGAGCCACCGCT
CATTTACTGATCGGGTTGATGCCGTGTTG
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