prot_P-littoralis_Contig101.17.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig101.17.1
Unique Nameprot_P-littoralis_Contig101.17.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length140
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig101.17.1 vs. uniprot
Match: A0A6H5KLD2_9PHAE (Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.120e-20
Identity = 62/102 (60.78%), Postives = 71/102 (69.61%), Query Frame = 0 
Query:   11 TFSVVFMTQSLGITLAAATASXXXXXIDGSGSLLVVCDKEEKHAATTP--TSQIRIGDRLIAVEGTSIAGLDVGSVERMIVRGSRPLEMVFRR-RQQRPVSS 109
            TFSVVFMTQSLGITLAA+         DG  SL VVCDKE+    +T   TS IRIGDRL++V GTS AG  V  VER+IVRG RPLE+VFRR R+  P +S
Sbjct:  584 TFSVVFMTQSLGITLAASD--------DGDKSL-VVCDKEDTTNPSTAEATSTIRIGDRLVSVGGTSTAGFGVNRVERLIVRGLRPLEVVFRRPRRHGPTAS 676
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.17.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLD2_9PHAE5.120e-2060.78Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036034PDZ superfamilyGENE3D2.30.42.10coord: 7..109
e-value: 7.4E-7
score: 31.1
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 19..105
IPR001478PDZ domainPROSITEPS50106PDZcoord: 21..103
score: 9.27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig101contigP-littoralis_Contig101:79176..79595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig101.17.1mRNA_P-littoralis_Contig101.17.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig101 79176..79596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig101.17.1 ID=prot_P-littoralis_Contig101.17.1|Name=mRNA_P-littoralis_Contig101.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
EEEEQEDEHTTFSVVFMTQSLGITLAAATASHDDDDIDGSGSLLVVCDKE
EKHAATTPTSQIRIGDRLIAVEGTSIAGLDVGSVERMIVRGSRPLEMVFR
RRQQRPVSSGGAGLPATAATNLVLSTYTAMCGAAEAAAGG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR001478PDZ