Homology
BLAST of mRNA_P-littoralis_Contig101.17.1 vs. uniprot
Match: A0A6H5KLD2_9PHAE (Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD2_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 5.120e-20 Identity = 62/102 (60.78%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 31 TFSVVFMTQSLGITLAAATASXXXXXIDGSGSLLVVCDKEEKHAATTP--TSQIRIGDRLIAVEGTSIAGLDVGSVERMIVRGSRPLEMVFRR-RQQRPVSS 327
TFSVVFMTQSLGITLAA+ DG SL VVCDKE+ +T TS IRIGDRL++V GTS AG V VER+IVRG RPLE+VFRR R+ P +S
Sbjct: 584 TFSVVFMTQSLGITLAASD--------DGDKSL-VVCDKEDTTNPSTAEATSTIRIGDRLVSVGGTSTAGFGVNRVERLIVRGLRPLEVVFRRPRRHGPTAS 676
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 421 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Cds size | 420 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789349.6109111-CDS-P-littoralis_Contig101:79175..79595 | 1680789349.6109111-CDS-P-littoralis_Contig101:79175..79595 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig101 79176..79595 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig101.17.1 >prot_P-littoralis_Contig101.17.1 ID=prot_P-littoralis_Contig101.17.1|Name=mRNA_P-littoralis_Contig101.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
EEEEQEDEHTTFSVVFMTQSLGITLAAATASHDDDDIDGSGSLLVVCDKE
EKHAATTPTSQIRIGDRLIAVEGTSIAGLDVGSVERMIVRGSRPLEMVFR
RRQQRPVSSGGAGLPATAATNLVLSTYTAMCGAAEAAAGG back to topmRNA from alignment at P-littoralis_Contig101:79176..79596+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig101.17.1 ID=mRNA_P-littoralis_Contig101.17.1|Name=mRNA_P-littoralis_Contig101.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=421bp|location=Sequence derived from alignment at P-littoralis_Contig101:79176..79596+ (Pylaiella littoralis U1_48)
GAGGAGGAAGAACAAGAGGATGAACACACTACGTTTTCTGTCGTGTTTAT
GACACAATCGCTCGGGATCACCCTCGCCGCCGCCACCGCCTCCCACGACG
ACGACGACATCGATGGCTCTGGATCCCTCCTCGTGGTCTGCGACAAGGAA
GAAAAGCACGCGGCGACGACACCAACATCACAGATACGCATCGGTGACCG
TCTGATCGCGGTGGAAGGGACCAGCATCGCGGGATTAGACGTGGGCAGTG
TCGAGAGGATGATCGTCCGGGGGTCCCGCCCGCTGGAGATGGTCTTCCGA
CGGCGACAACAGCGCCCCGTTTCCAGCGGCGGCGCCGGTCTGCCTGCGAC
TGCCGCTACGAATTTGGTGTTATCTACGTATACAGCGATGTGTGGAGCAG
CAGAAGCAGCAGCAGGAGGAG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig101:79176..79596+ >mRNA_P-littoralis_Contig101.17.1 ID=mRNA_P-littoralis_Contig101.17.1|Name=mRNA_P-littoralis_Contig101.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig101:79176..79596+ (Pylaiella littoralis U1_48)
GAGGAGGAAGAACAAGAGGATGAACACACTACGTTTTCTGTCGTGTTTAT
GACACAATCGCTCGGGATCACCCTCGCCGCCGCCACCGCCTCCCACGACG
ACGACGACATCGATGGCTCTGGATCCCTCCTCGTGGTCTGCGACAAGGAA
GAAAAGCACGCGGCGACGACACCAACATCACAGATACGCATCGGTGACCG
TCTGATCGCGGTGGAAGGGACCAGCATCGCGGGATTAGACGTGGGCAGTG
TCGAGAGGATGATCGTCCGGGGGTCCCGCCCGCTGGAGATGGTCTTCCGA
CGGCGACAACAGCGCCCCGTTTCCAGCGGCGGCGCCGGTCTGCCTGCGAC
TGCCGCTACGAATTTGGTGTTATCTACGTATACAGCGATGTGTGGAGCAG
CAGAAGCAGCAGCAGGAGGA back to top
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