prot_P-littoralis_Contig143.101.6 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig143.101.6
Unique Nameprot_P-littoralis_Contig143.101.6
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length619
Homology
BLAST of mRNA_P-littoralis_Contig143.101.6 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 438 bits (1126), Expect = 6.430e-146
Identity = 281/573 (49.04%), Postives = 304/573 (53.05%), Query Frame = 0
Query:   54 LPDNEFEAAKKGLHVEDIDCSLVVRPTRTALDMTFFGEISYSFEIASARLVRPPKRPPDYVDA-CRQKCSPGKPCSCLGGISDSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSLVXXXXXXXXXXXXXXXGEGVGNEAGVRGGEGGGWERESPGGVHPLHHSLHMGINDVATLVLEDNLGITYDFYTFQDEAVAEQMLAKIESFIREARADGNSTXXXXXXXXXXXXXXXXXXXXRAAHGAAEQAPLELEVLYDDSWLDEMACGLFLVIAFGLMTLPYVEVVEFNADSGAMALDRWNLFHCGVFRYSCALENISKVEITEADVYMVSAHAFEHLRQTKEFGLRVVFSFPLNGGPGTASTPPPGASVSTNASVAVXXXXXXXXXXXXXXXXXXXXFRAVSGTSEGVGTGGGGRAAGMVHSAVLLPSSSLGGRRQRWEASFRRLFR-------LGGGGWWRPPAARGIPSTSGGFMYLDLLFGKKELDDRKLRGPVELVNDLLLRFASNDAETNGGQKKEANCCVCFRRRSRVVTFPCMHMATCPQCSESLSVCPLCRASISEKHTVFL 618
            +PDNE EAAK GLHVEDIDCSLVVRPTRTALD+ FFGE+SYSFEI +ARLVRPPKRPPD     CR KCSPGK C C     + DS                                 L                 EG G                   GVHP HHSL+MG+NDVATLVLEDN GITYDFYTFQ                                                                                           VVEF+ADSGAMALDRWNLFHCGVFRYSCALENISKVEITE +VYM+SAHAFEHLRQTKEFGLRV+FS PL  G   A+T  P +    NA +                        AVSGT      GG   A      A   P      RR+RW   FRRL          GG GWWR PAARG+ STSG  MYL+LLFGKKELDDR LR PVE+VN+LLLRFA ND E + G+KKE NCCVCFRRRSRVVTFPCMHMATCPQCSESL+VCPLCRA+ISEKHTVFL
Sbjct:    1 MPDNELEAAK-GLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPC-----NHDSPARSR---------------------------RLAEDVEPPGKTEVALSVPEGDGEXXXXXX-----XXXXXXXGVHP-HHSLNMGVNDVATLVLEDNQGITYDFYTFQ-------------------------------------------------------------------------------------------VVEFDADSGAMALDRWNLFHCGVFRYSCALENISKVEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPL--GASQAATAHPRSPRPNNAGM------NFSDPGGSSPSSDGDGISAVSGT-----VGGAPVARAAARRAAGAP------RRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA-NDVEVDVGEKKEGNCCVCFRRRSRVVTFPCMHMATCPQCSESLTVCPLCRANISEKHTVFL 423          
BLAST of mRNA_P-littoralis_Contig143.101.6 vs. uniprot
Match: A0A6H5JJL0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL0_9PHAE)

HSP 1 Score: 422 bits (1084), Expect = 7.880e-137
Identity = 236/381 (61.94%), Postives = 261/381 (68.50%), Query Frame = 0
Query:  245 TFQDEAVAEQMLAKIESFIREARADGNSTXXXXXXXXXXXXXXXXXXXXRAAHGAAEQAPLELEVLYDDSWLDEMACGLFLVIAFGLMTLPYVEVVEFNADSGAMALDRWNLFHCGVFRYSCALENISKVEITEADVYMVSAHAFEHLRQTKEFGLRVVFSFPLNGGPGTASTPPPGASVSTNASVAVXXXXXXXXXXXXXXXXXXXXFRAVSGTSEGVGTGGGGRAAGMVHSAVLLPSSSLGGRRQRWEASFRRLFR-------LGGGGWWRPPAARGIPSTSGGFMYLDLLFGKKELDDRKLRGPVELVNDLLLRFASNDAETNGGQKKEANCCVCFRRRSRVVTFPCMHMATCPQCSESLSVCPLCRASISEKHTVFL 618
            T  DEA+AE+ML K++SFIREAR  GNS                         G AEQAPLELEV YDDSWLDEMACGLFLVIA  LMT PYVEVVEF+ADSGAMALDRWNLF+CGVFRYSCALENISK+EITE +VYM+SAHAFEHLRQTKEFGLRV+FS PL  G    +T  P +   +NA++ +                       VSGT      GG   A G    AV  P      RR+RW   FRRL          GG GWWR PAARG+ STSG  MYL+LLFGKKELDDR LR PVE+VN+LLLRFA ND E +GG+KKE NCCVCFRRRSRVV FPCMHMATCPQCSESL+VCPLCRA+ISEKHTVFL
Sbjct:  269 TVADEALAERMLEKVDSFIREARQGGNSNSNNLSSHGRGAGA--------TEKGTAEQAPLELEVHYDDSWLDEMACGLFLVIALALMTRPYVEVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPL--GASQETTAHPRSPRPSNAAMNLSDTDGSSPSSDGDG------ISGVSGT-----VGGAPVARGTARRAVGAP------RRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA-NDVEVDGGEKKEGNCCVCFRRRSRVVMFPCMHMATCPQCSESLAVCPLCRANISEKHTVFL 621          
BLAST of mRNA_P-littoralis_Contig143.101.6 vs. uniprot
Match: A0A6H5JRV5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV5_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 5.300e-30
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 0
Query:   54 LPDNEFEAAKKGLHVEDIDCSLVVRPTRTALDMTFFGEISYSFEIASARLVRPPKRPPDYVDA-CRQKCSPGKPCSC 129
            +PDNE EAAK GLHVEDIDCSLVVRPTRTALD+ FFGE+SYSFEI +ARLVRPPKRPPD     CR KCSPGK C C
Sbjct:    1 MPDNELEAAK-GLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPC 76          
BLAST of mRNA_P-littoralis_Contig143.101.6 vs. uniprot
Match: A0A7S2Y0H0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0H0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.050e-21
Identity = 104/411 (25.30%), Postives = 157/411 (38.20%), Query Frame = 0
Query:    1 MEVLEKTQRKVVVRQRRHEVLRAVFGCLLLTLLFYLLDARHPKSSLYCMRHAVLPDNEFEAAKKGLHVEDIDCSLVVRPTRTALDMTFFGEISYSFEIASARLVRPPKRPPDYVDACRQKCSPGKPCSCLGGISDSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSLVXXXXXXXXXXXXXXXGEGVGNEAGVRGGEGGGWERESPGGVHPLHHSLHMGINDVATLVLEDNLGITYDFYTFQDEAVAEQMLAKIESFIREARADGNSTXXXXXXXXXXXXXXXXXXXXRAAHGAAEQAPLELEVLYDDSWLDEMACGLFLVIAFGLMTLPYVEVVEFNADSGAMALDRWNLFHCGVFRYSCALENISKVEITEADVYMVSA---HAFEHLRQTKEFGLRVVFSFPL 408
            M++LEK   +VV+     ++  +   C++ T +F LLDA HPK+SL+C+RH +L D       +    ED DC L+VR TR+  D+      +YSFE+A   +                            GIS+                                  +SL                                             HH  +   N + ++VLEDN   TY FYTFQD   A ++   +  ++  AR                                 ++  L L + YDDS++DE A  +F V+A  L+     EV  F+A+SG   L+R NL       Y+CALENIS ++I    V+  ++   H   HL + +EF LRV+   P+
Sbjct:    1 MKLLEKQPHRVVLSHTNGKLKYSAILCVVFTFIFLLLDAEHPKASLFCVRHEILVD-------RPAAYEDNDCELLVRETRSLWDVVRQNTQAYSFEVAGVNM------------------------QVSSGISN----------------------YIVKYEGNATHVMSLYDVFLQR--------------------------------------HHGRYKR-NSMFSVVLEDNEDNTYIFYTFQDLETACRVYDHVLRYLLNARE--------------------------------QRDRLRLNLDYDDSYMDEAAVAVFAVLAVLLLWKHCKEVAVFDAESGVFRLERSNLVSRPQVLYTCALENISALQIAGDTVFTFTSSRRHTDNHLMERQEFSLRVLLCRPM 287          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.101.6 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LC33_ECTSI6.430e-14649.04RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJL0_9PHAE7.880e-13761.94RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JRV5_9PHAE5.300e-3079.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2Y0H0_9STRA4.050e-2125.30Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 569..611
e-value: 6.7E-10
score: 38.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..160
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 568..614
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 557..618
e-value: 2.1E-13
score: 51.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 572..607
score: 10.114045

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig143contigP-littoralis_Contig143:402589..415309 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig143.101.6mRNA_P-littoralis_Contig143.101.6Pylaiella littoralis U1_48mRNAP-littoralis_Contig143 402380..417115 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig143.101.6 ID=prot_P-littoralis_Contig143.101.6|Name=mRNA_P-littoralis_Contig143.101.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=619bp
MEVLEKTQRKVVVRQRRHEVLRAVFGCLLLTLLFYLLDARHPKSSLYCMR
HAVLPDNEFEAAKKGLHVEDIDCSLVVRPTRTALDMTFFGEISYSFEIAS
ARLVRPPKRPPDYVDACRQKCSPGKPCSCLGGISDSDSSSSSSNNKKDPA
RKERSTFEKRAAASSTDAKVSLVATAAVVGDTKDGGGGGEGVGNEAGVRG
GEGGGWERESPGGVHPLHHSLHMGINDVATLVLEDNLGITYDFYTFQDEA
VAEQMLAKIESFIREARADGNSTSSSGSNEGGGGGAGAGAGAGRAAHGAA
EQAPLELEVLYDDSWLDEMACGLFLVIAFGLMTLPYVEVVEFNADSGAMA
LDRWNLFHCGVFRYSCALENISKVEITEADVYMVSAHAFEHLRQTKEFGL
RVVFSFPLNGGPGTASTPPPGASVSTNASVAVPSTSSAAATAGSAGSSAS
GGFRAVSGTSEGVGTGGGGRAAGMVHSAVLLPSSSLGGRRQRWEASFRRL
FRLGGGGWWRPPAARGIPSTSGGFMYLDLLFGKKELDDRKLRGPVELVND
LLLRFASNDAETNGGQKKEANCCVCFRRRSRVVTFPCMHMATCPQCSESL
SVCPLCRASISEKHTVFL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING