mRNA_P-littoralis_Contig101.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig101.12.1
Unique NamemRNA_P-littoralis_Contig101.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Match: D8LR58_ECTSI (Protein CLP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR58_ECTSI)

HSP 1 Score: 735 bits (1897), Expect = 3.280e-265
Identity = 385/412 (93.45%), Postives = 394/412 (95.63%), Query Frame = 1 
Query:   85 ATAGAKVETRTWVLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSSKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVVGEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDIDASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVAVINLPRSGGVVLRSPTHRRASRDRRCREYFYGXXXXASAVGG--APALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSSDLLHTVLAVCHPVLRQDGTMLGGASGLEGDRDSAEAAQ 1314
            A+A AKVETRTWVLQAETELRFDVSAEHTLTVVL+ENTAEMFGIELAAEYEYKFSS+KAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTN+TGPRVMVVGEADSGKSTL NILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLV FYGHT+LQENPELFKKLV RMAECLKRRVANDIDASASGAIFNTCGWVEGLGL+LLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVAVINLPRSGGV LRS  +RRASRDRRCREYFY XXXX        APALSPAALHL+FNDVSIFRVGGQ VSDAMLPVGHSD+SLGPLQVNP YPSSDLLHTVLAVCHPVLRQDGTMLGGASGLEGDRDSAEAAQ
Sbjct:    2 ASAAAKVETRTWVLQAETELRFDVSAEHTLTVVLRENTAEMFGIELAAEYEYKFSSTKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNITGPRVMVVGEADSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELFKKLVGRMAECLKRRVANDIDASASGAIFNTCGWVEGLGLELLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVAVINLPRSGGVALRSSQYRRASRDRRCREYFYXXXXXXXXXXXXXAPALSPAALHLDFNDVSIFRVGGQTVSDAMLPVGHSDSSLGPLQVNPFYPSSDLLHTVLAVCHPVLRQDGTMLGGASGLEGDRDSAEAAQ 413
[Close]
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Match: A0A6H5KLD2_9PHAE (Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD2_9PHAE)

HSP 1 Score: 736 bits (1901), Expect = 4.390e-254
Identity = 386/412 (93.69%), Postives = 395/412 (95.87%), Query Frame = 1 
Query:   85 ATAGAKVETRTWVLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSSKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVVGEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDIDASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVAVINLPRSGGVVLRSPTHRRASRDRRCREYFYGXXXXASAVGG--APALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSSDLLHTVLAVCHPVLRQDGTMLGGASGLEGDRDSAEAAQ 1314
            A+A AKVETRTWVLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSS+KAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTN+TGPRVMVVGEADSGKSTL NILAAYAVRLGRCPTFVDLDVGQGMI VPGGIAAAALDSNSMSVEEGFSLTAPLV FYGHT+LQENPELFKKLV RMAECLKRR+ANDIDASASGAIFNTCGWVEGLGL+LLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVAVINLPRSGGV LRS  +RRASRDRRCREYFYGXXXX        APALSPAALHL+FNDVSIFRVGGQ VSDAMLPVGHSD+SLGPLQVNPLYPSSDLLHTVLAVCHPVLRQDGTMLGGASGLEGDRDSAEAAQ
Sbjct:    2 ASATAKVETRTWVLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSTKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNITGPRVMVVGEADSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMIAVPGGIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELFKKLVGRMAECLKRRMANDIDASASGAIFNTCGWVEGLGLELLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVAVINLPRSGGVALRSSQYRRASRDRRCREYFYGXXXXXXXXXXXXAPALSPAALHLDFNDVSIFRVGGQTVSDAMLPVGHSDSSLGPLQVNPLYPSSDLLHTVLAVCHPVLRQDGTMLGGASGLEGDRDSAEAAQ 413
[Close]
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Match: A0A835YJV7_9STRA (Protein CLP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV7_9STRA)

HSP 1 Score: 412 bits (1060), Expect = 4.240e-138
Identity = 225/413 (54.48%), Postives = 284/413 (68.77%), Query Frame = 1 
Query:   85 ATAGAKVETRTWVLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSS-SKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVVGEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDIDASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVA---TLPRSV---AVINLPRSGGVVLRSPTHRRASRDRRCREYFYGXXXXASAVGGAPALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSSDLLHTVLAVCHPVLRQDGTMLGGASGLEGDRDSA 1302
            ++A    + + W L+ E+ELRF+V  + + TVVL E +AE+FG+ELA   EY FS+ +K AVFTWYGC ++TT     +YVA++TPM SYVNTH QLEARRD+AL  L  G   V GPRV+V G  DSGKS+L  +L AYAVRLGR PTFVDLDVGQG IT+PG ++A +LDS ++S+EE  SL APL FFYGH +  ENPELF+ +V R+AEC+++R AND DA+A+G + NTCGWV+GLGL+LL H I  L ID+VLVM HD+LYA+++A    LP       V+ LP SGGVV RS   RR  R  R REYFYG          +PAL+P  L L  + V + RVGG  +S  +LPVG +   LGP +V+ + PS DLLH VLAVCHPVL+ DGT L    G EG  D A
Sbjct:    4 SSAAEGEDKKIWTLEKESELRFEVGPDKSFTVVLLEQSAEIFGVELAVNTEYHFSAGAKVAVFTWYGCKLQTTRTAEVLYVAKDTPMLSYVNTHIQLEARRDQALSKLSKGEKAV-GPRVLVAGATDSGKSSLCAVLCAYAVRLGRTPTFVDLDVGQGEITIPGTVSAVSLDSGTLSIEERLSLAAPLTFFYGHDSPGENPELFRHMVSRLAECVEQRQANDRDAAAAGTVVNTCGWVDGLGLELLRHCIDALSIDIVLVMGHDKLYAELMADSEALPDDAPPRTVVKLPTSGGVVQRSAQQRRQGRAARVREYFYGAPHAERRA--SPALTPTLLELRMDSVRVCRVGGTQLSGGLLPVGQA-ALLGPTRVSMVKPSHDLLHAVLAVCHPVLKPDGTAL--VPGEEGGLDDA 410
[Close]
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Match: A0A2D4BR80_PYTIN (Protein CLP1 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR80_PYTIN)

HSP 1 Score: 321 bits (822), Expect = 1.580e-102
Identity = 177/382 (46.34%), Postives = 241/382 (63.09%), Query Frame = 1 
Query:  121 VLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSSKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVVGEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDIDASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVATLPRSV-----AVINLPRSGGVVLRSPTHRRASRDRRCREYFYGXXXXASAVGGAPALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSSDLLHTVLAVCHPVLRQD 1251
            VL  E E R +V A   L V L   +AE+FG+ELA   EY     KAA+FTWYG T++ TG     Y ++ETPM SY+N HAQL+ RR+ A+    AG      PRV++ G  DSGKSTLT IL  YA+RLG  PT VDLDVGQ  ++VPG +AA  LD N +SVEEG+ LT PLV+F+GHT++ EN E F+  +++++  +KRR+A D++A+ASG I NTCGWV+GLG  LL  ++   D DVVLV+  DRL++ + ++L + V     +++ L RSGGVV  +  +R A R  R REYFYG       +   P LSP      ++++  + +    VS  MLPVG + + +G L V+ L  S +LLH+V AV HP  RQD
Sbjct:    5 VLGREGEYRVEVGASTELKVKLVSGSAELFGVELAINNEYTLRDQKAAIFTWYGATLQVTGTPEVAYTSEETPMNSYINIHAQLQKRRELAMLKGSAG------PRVLIAGPVDSGKSTLTQILLNYALRLGEKPTHVDLDVGQNSLSVPGSLAATPLDMNCLSVEEGYVLTNPLVYFFGHTSMSENVEHFRSHLQQLSRAVKRRLAEDVEANASGCIINTCGWVDGLGYDLLVESVRAFDADVVLVIGQDRLFSRLQSSLAQQVTSKNLSIVKLVRSGGVVPLNSKYRSAXRQSRIREYFYGSHSLQRPI---PLLSPCINEYSWDELEFYAIKDMKVSAGMLPVGQTASDMGGLFVSKLDKSMELLHSVAAVVHP-RRQD 376
[Close]
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Match: K3W9W5_GLOUD (Protein CLP1 homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9W5_GLOUD)

HSP 1 Score: 320 bits (820), Expect = 3.060e-102
Identity = 178/382 (46.60%), Postives = 241/382 (63.09%), Query Frame = 1 
Query:  121 VLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSSKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVVGEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDIDASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVATLP-----RSVAVINLPRSGGVVLRSPTHRRASRDRRCREYFYGXXXXASAVGGAPALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSSDLLHTVLAVCHPVLRQD 1251
            VL  E E R ++ A+    + LK  +AE+FG+ELA ++EY     K AVFTWYGCT+E  G     Y ++ETPM SY+N HAQL+ RR+  L A++      +GPRV+V G  DSGKSTLT IL  YA+RLG  PT V+LDVG G ++VPG IAA+ LD NS+SVEE F LT PL +F+GH    +NPELF   + ++A  ++RR+ ND + +ASG I NT GWV+GLG  LL  +I V +IDVVLV+  DRL++ + ++       +S++++ L RSGGVV  +  HR A R  R REYFYG    + AV   P  SP    + F+DV  F +    VSD MLPVG ++  L  L+V  +  + +LL ++ AV HP   QD
Sbjct:    7 VLARECEYRVEIGAQSEFKIKLKSGSAELFGVELAIDHEYTLRDKKVAVFTWYGCTLEVQGERDVAYSSEETPMNSYLNIHAQLQRRRE--LAAVKRS----SGPRVLVAGPVDSGKSTLTQILTNYALRLGEKPTLVELDVGVGSLSVPGTIAASPLDMNSISVEEEFVLTNPLAYFFGHAAQSDNPELFHHQMRQLASAVQRRMDNDAEVNASGCIINTSGWVDGLGYDLLVESIQVFEIDVVLVIGQDRLFSRLQSSFASSGASQSLSIVKLARSGGVVPLNSKHRSAKRLGRIREYFYGPNSLSLAV---PTHSPCITEISFDDVDFFAIKDMKVSDVMLPVGQTEDKLDRLRVVKVEKTQELLLSIAAVAHPKRSQD 379
[Close]
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Match: H3GV05_PHYRM (Protein CLP1 homolog n=12 Tax=Phytophthora TaxID=4783 RepID=H3GV05_PHYRM)

HSP 1 Score: 320 bits (819), Expect = 4.750e-102
Identity = 178/385 (46.23%), Postives = 242/385 (62.86%), Query Frame = 1 
Query:  121 VLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSSKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVVGEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDIDASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVA------VINLPRSGGVVLRSPTHRRASRDRRCREYFYGXXXXASAVGGAPALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSSDLLHTVLAVCHPVLRQDGT 1257
            VL  E E R +V  +  + V LK  +AE+FG+ELA + EY F   K A+FTWYGCT+E  G     Y +++T M SY+N HAQL+ RR+ A         +  GPRV+V G  DSGKSTLT+ILA YA+RLG  PT V+LDVG G ++VPG ++A+ LD NS+S+EE F LT PL FFYGH    EN ELF+   +++A+ +KRR+AND + +ASG + NTCGWV+G+G  LL HAI   ++DVVLV+  DRL++ + ++L  + A      ++ L RSGGVV  +   R A+R    REYFYG    + A+     LSP      F+DVS + +    VSD MLPVG  +T    L+V P+  ++DL H++ AV HP   QD T
Sbjct:    8 VLAREGEYRVEVPPQTEVGVRLKSGSAELFGVELAIDREYTFRDRKLAIFTWYGCTLEVRGAPEVAYTSEDTTMDSYLNIHAQLQRRRELAKAK------HAAGPRVLVCGPVDSGKSTLTHILANYALRLGEKPTLVELDVGHGCLSVPGTLSASPLDMNSLSIEEDFILTNPLAFFYGHAAASENVELFRYQQQQLAKAVKRRLANDEEVNASGCVINTCGWVDGMGFDLLLHAIKEFEVDVVLVIGQDRLFSRLQSSLTGANANGVDRSIVKLSRSGGVVPLNSKLRSAARISCIREYFYGAHSLSVAIS---TLSPCINEFSFDDVSFYMIKDMKVSDVMLPVGQVETQSDRLRVVPVEKTADLGHSLAAVAHPQHGQDAT 383
[Close]
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Match: A0A3R7G6W1_9STRA (Protein CLP1 homolog n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G6W1_9STRA)

HSP 1 Score: 318 bits (816), Expect = 1.300e-101
Identity = 180/385 (46.75%), Postives = 241/385 (62.60%), Query Frame = 1 
Query:  121 VLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSSKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVVGEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDIDASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVA------VINLPRSGGVVLRSPTHRRASRDRRCREYFYGXXXXASAVGGAPALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSSDLLHTVLAVCHPVLRQDGT 1257
            VL  E E R +V  ++ + + LK  +AE+FG+ELA + EY F   K A+FTWYGCT+E  G     Y ++ETPM SY+N HAQL+ RR+ A     AG      PRV+V G  DSGKSTLT IL  YA+RLG  PT V+LDVG G I+VPG ++A+ LD NS+SVEE F LT PL FFYGHT   EN ELF+   +++A+ +KRR+ ND + +A+G + NTCGWV+G+G  LL HAI   ++DVVLV+  DRLY+ + + L  + A      ++ L RSGGVV  S   R A+R    REYFYG    +  +   P LSP      F+DVS + +    VSD MLPVG  +T    L+V P+  ++DL H++ AV +P   QD +
Sbjct:    7 VLAREGEYRVEVPPQNEVGIRLKSGSAELFGVELAIDREYVFRDRKLAIFTWYGCTLEVRGAPEVAYTSEETPMDSYLNIHAQLQRRRELAKAKHGAG------PRVLVCGPVDSGKSTLTQILINYALRLGEKPTLVELDVGHGCISVPGTLSASPLDMNSLSVEEEFILTNPLAFFYGHTAPSENVELFRYQQQQLAKVVKRRLTNDEEVNAAGCVVNTCGWVDGVGFDLLVHAIKEFELDVVLVIGQDRLYSRLQSALTGANAGGVERSILKLSRSGGVVPLSTKLRSAARISCIREYFYGAHSLSVTI---PTLSPCINEFSFDDVSFYAIKDMKVSDVMLPVGQVETQTDRLRVVPVEKTADLGHSLAAVAYPRHGQDAS 382
[Close]
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Match: A0A6A4FNY2_9STRA (Protein CLP1 homolog n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FNY2_9STRA)

HSP 1 Score: 317 bits (813), Expect = 4.020e-101
Identity = 181/395 (45.82%), Postives = 241/395 (61.01%), Query Frame = 1 
Query:   97 AKVETRTWVLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSSKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVVGEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDIDASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVA------VINLPRSGGVVLRSPTHRRASRDRRCREYFYGXXXXASAVGGAPALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSSDLLHTVLAVCHPVLRQDGTML 1263
            A+  T   VL  E E R +V  +  + V LK  +AE+FG+ELA +  Y F   K A+FTWYGCT+E  G     Y ++ETPM SY+N HAQL+ RR+ A     AG      PRV+V G ADSGKSTL  IL  YA+RLG  PT V+LDVG G ++VPG +AA+ LD N++S+EE F LT PL +FYGH    EN ELF+   +++A  +KRR+AND + +A+G + NTCGWV+G G  LL  AI   D+DVVLV+  DRLY+ + + L  + A      ++ L RSGGVV  +   R A+R    REYFYG    + A+   P LSP      F+DVS + +    VSD MLPVG  +T    L+V P+  ++DL H++ AV HP   QD + L
Sbjct:    2 AETTTTEVVLAREAEYRVEVPPQTEVGVRLKSGSAELFGVELAIDRSYVFHDRKLAIFTWYGCTLEVRGAPEVAYTSEETPMDSYLNIHAQLQRRRELARAKRAAG------PRVLVCGPADSGKSTLAQILVNYALRLGEKPTLVELDVGHGCLSVPGTLAASPLDMNALSIEEDFVLTNPLAYFYGHAACSENVELFRYQQQQLAAAVKRRLANDEEVNAAGCVVNTCGWVDGTGFDLLVQAIRDFDVDVVLVIGQDRLYSRLQSALTGANANGVDRSIVKLARSGGVVPLNNKLRSAARISCIREYFYGAHSLSVAI---PTLSPCINEFSFDDVSFYAIKDMKVSDVMLPVGQVETQTDRLRVVPVEKTADLGHSLAAVAHPPHGQDTSSL 387
[Close]
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Match: A0A3M6VIE0_9STRA (Protein CLP1 homolog n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIE0_9STRA)

HSP 1 Score: 316 bits (809), Expect = 1.510e-100
Identity = 175/378 (46.30%), Postives = 234/378 (61.90%), Query Frame = 1 
Query:  121 VLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSSKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVVGEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDIDASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVA------VINLPRSGGVVLRSPTHRRASRDRRCREYFYGXXXXASAVGGAPALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSSDLLHTVLAVCHP 1236
            VL  E E R +V  +  ++V LK  +AE+FG+ELA ++EY F   K A+FTWYGCT+E  G     Y ++ETPM SY+N H+QL+  R+ A         +  GPRV+V G  DSGKSTLT IL  YA+RLG  PT V+LDVG G ++VPG ++A+ LD NS+SVEE F LT PL +FYGH    +N ELF+   +++A+ +KRR+ ND   +ASG + NTCGWV+G G  LL HAI   ++DVVLV+  DRLY+ + +TL    A      ++ L RS GVV R+   R A R    REYFYG    + A+   P LSP      F+DVS F +    VSD MLPVG  +T    L+  P+  ++DL H++ AV HP
Sbjct:    8 VLAREAEYRVEVPPQTEVSVRLKSGSAELFGVELAIDHEYVFRDRKVAIFTWYGCTLEVNGAPEVAYTSEETPMDSYLNIHSQLQRCRELAKAK------HAAGPRVLVCGPVDSGKSTLTQILVNYALRLGEKPTLVELDVGHGCLSVPGTLSASPLDMNSLSVEEDFVLTNPLAYFYGHAMSSDNVELFRYQQQQLAKTVKRRLENDAQVNASGCVINTCGWVDGAGFDLLVHAIKDFEVDVVLVIGQDRLYSRLQSTLTGVHANGVDRSIVKLSRSDGVVPRNSKLRSALRISCIREYFYGAHSLSVAI---PTLSPCINEFSFDDVSFFAIKDMKVSDVMLPVGQVETQTDRLRAVPVEKTADLGHSLAAVAHP 376
[Close]
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Match: A0A8K1FEA6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEA6_PYTOL)

HSP 1 Score: 320 bits (821), Expect = 5.560e-99
Identity = 170/377 (45.09%), Postives = 236/377 (62.60%), Query Frame = 1 
Query:  121 VLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSSKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVVGEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDIDASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVATLPR-----SVAVINLPRSGGVVLRSPTHRRASRDRRCREYFYGXXXXASAVGGAPALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSSDLLHTVLAVCHP 1236
            VL+ E E R +VSA+  +TV L   +AE+FGIELA + EY     KAA+FTWYG T++ TG     Y + ETPM SYVN HAQL+ RR+ A          + GPRV++ G  DSGKSTLT+IL  YA+RLG  PT VDLDVGQ  ++VPG +AA  LD N +S+E+G+ LT PL FFYGHTN+ EN E F+ +++++A  +KRR+A+D + +ASG + NTCGWV+GLG  LL  +I   ++DVVLV+  DRL++ + ++L +       +++ L RSGGVV  +   R   R  R R+YFYG       +   P LSP       ++V  + +    VS  MLPVG + + +  L V  L  + +LLH++ AV HP
Sbjct:  292 VLERECEYRVEVSAQAPVTVKLVSGSAELFGIELAIDNEYTLRDQKAAIFTWYGATLQVTGTPEVAYTSDETPMNSYVNIHAQLQKRRELAKLK------GIAGPRVLIAGPVDSGKSTLTSILLNYALRLGEKPTHVDLDVGQSSLSVPGSVAATPLDMNCLSIEDGYVLTNPLAFFYGHTNMAENAEHFRSMLQQLARAVKRRLADDNEVNASGCVINTCGWVDGLGYDLLVESIQAFEVDVVLVIGQDRLFSRLQSSLAKLPGADRFSIVKLVRSGGVVPLNSKFRSTRRQSRIRDYFYGSHALTRPI---PLLSPCINEYSLDEVEFYAIKDMRVSAGMLPVGQTASEMSRLAVTKLEKTMELLHSIAAVAHP 659
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR58_ECTSI3.280e-26593.45Protein CLP1 homolog n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KLD2_9PHAE4.390e-25493.69Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A835YJV7_9STRA4.240e-13854.48Protein CLP1 homolog n=1 Tax=Tribonema minus TaxID... [more]
A0A2D4BR80_PYTIN1.580e-10246.34Protein CLP1 homolog n=1 Tax=Pythium insidiosum Ta... [more]
K3W9W5_GLOUD3.060e-10246.60Protein CLP1 homolog n=1 Tax=Globisporangium ultim... [more]
H3GV05_PHYRM4.750e-10246.23Protein CLP1 homolog n=12 Tax=Phytophthora TaxID=4... [more]
A0A3R7G6W1_9STRA1.300e-10146.75Protein CLP1 homolog n=3 Tax=Phytophthora kernovia... [more]
A0A6A4FNY2_9STRA4.020e-10145.82Protein CLP1 homolog n=1 Tax=Phytophthora rubi Tax... [more]
A0A3M6VIE0_9STRA1.510e-10046.30Protein CLP1 homolog n=1 Tax=Peronospora effusa Ta... [more]
A0A8K1FEA6_PYTOL5.560e-9945.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig101contigP-littoralis_Contig101:56660..66730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR58
Preferred nameCLP1
PFAMsCLP1_N,CLP1_P,Clp1
Model size1315
Max annot lvl2759|Eukaryota
KEGG koko:K14399
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000214,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006388,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009117,GO:0009791,GO:0009892,GO:0009908,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016301,GO:0016310,GO:0016441,GO:0016458,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019205,GO:0019222,GO:0019438,GO:0019637,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021549,GO:0021695,GO:0021953,GO:0022008,GO:0022037,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030182,GO:0030423,GO:0030554,GO:0030902,GO:0031047,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035087,GO:0035194,GO:0035639,GO:0036094,GO:0040029,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046939,GO:0048367,GO:0048513,GO:0048519,GO:0048608,GO:0048699,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0051731,GO:0051732,GO:0051733,GO:0051734,GO:0051736,GO:0055086,GO:0060255,GO:0060322,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070922,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090567,GO:0097159,GO:0097367,GO:0097659,GO:0099402,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1902555,GO:1905348
Exons9
Evalue5.38e-266
EggNOG OGsCOG5623@1|root,KOG2749@2759|Eukaryota
Ec32 ortholog descriptionPre-mRNA cleavage complex II Clp1
Ec32 orthologEc-06_004260.1
EC2.7.1.78
DescriptionmRNA 3'-end processing
Cds size1314
COG categoryA
BRITEko00000,ko00001,ko01000,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig101.12.1prot_P-littoralis_Contig101.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig101 56660..66730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789349.472468-CDS-P-littoralis_Contig101:56659..568421680789349.472468-CDS-P-littoralis_Contig101:56659..56842Pylaiella littoralis U1_48CDSP-littoralis_Contig101 56660..56842 +
1680789349.4876795-CDS-P-littoralis_Contig101:62440..625151680789349.4876795-CDS-P-littoralis_Contig101:62440..62515Pylaiella littoralis U1_48CDSP-littoralis_Contig101 62441..62515 +
1680789349.4998271-CDS-P-littoralis_Contig101:63023..632031680789349.4998271-CDS-P-littoralis_Contig101:63023..63203Pylaiella littoralis U1_48CDSP-littoralis_Contig101 63024..63203 +
1680789349.512377-CDS-P-littoralis_Contig101:63757..639371680789349.512377-CDS-P-littoralis_Contig101:63757..63937Pylaiella littoralis U1_48CDSP-littoralis_Contig101 63758..63937 +
1680789349.524306-CDS-P-littoralis_Contig101:64160..642471680789349.524306-CDS-P-littoralis_Contig101:64160..64247Pylaiella littoralis U1_48CDSP-littoralis_Contig101 64161..64247 +
1680789349.537655-CDS-P-littoralis_Contig101:64620..647031680789349.537655-CDS-P-littoralis_Contig101:64620..64703Pylaiella littoralis U1_48CDSP-littoralis_Contig101 64621..64703 +
1680789349.552007-CDS-P-littoralis_Contig101:65070..652251680789349.552007-CDS-P-littoralis_Contig101:65070..65225Pylaiella littoralis U1_48CDSP-littoralis_Contig101 65071..65225 +
1680789349.5641382-CDS-P-littoralis_Contig101:65430..656631680789349.5641382-CDS-P-littoralis_Contig101:65430..65663Pylaiella littoralis U1_48CDSP-littoralis_Contig101 65431..65663 +
1680789349.5740569-CDS-P-littoralis_Contig101:66592..667301680789349.5740569-CDS-P-littoralis_Contig101:66592..66730Pylaiella littoralis U1_48CDSP-littoralis_Contig101 66593..66730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig101.12.1

>prot_P-littoralis_Contig101.12.1 ID=prot_P-littoralis_Contig101.12.1|Name=mRNA_P-littoralis_Contig101.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=438bp
RAYTHKNVICCRLLNNVRNSGMATYSAGATAGAKVETRTWVLQAETELRF
DVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSSKAAVFTWYGCTIETT
GWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNVTGPRVMVV
GEADSGKSTLTNILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDS
NSMSVEEGFSLTAPLVFFYGHTNLQENPELFKKLVERMAECLKRRVANDI
DASASGAIFNTCGWVEGLGLQLLAHAITVLDIDVVLVMKHDRLYADMVAT
LPRSVAVINLPRSGGVVLRSPTHRRASRDRRCREYFYGGGGGASAVGGAP
ALSPAALHLEFNDVSIFRVGGQMVSDAMLPVGHSDTSLGPLQVNPLYPSS
DLLHTVLAVCHPVLRQDGTMLGGASGLEGDRDSAEAAQ
back to top

mRNA from alignment at P-littoralis_Contig101:56660..66730+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig101.12.1 ID=mRNA_P-littoralis_Contig101.12.1|Name=mRNA_P-littoralis_Contig101.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10071bp|location=Sequence derived from alignment at P-littoralis_Contig101:56660..66730+ (Pylaiella littoralis U1_48)
CGGGCTTACACACACAAGAATGTCATCTGCTGTCGACTCTTGAATAACGT
ACGGAATAGTGGAATGGCAACTTATTCGGCAGGAGCAACAGCAGGAGCAA
AGGTAGAGACTCGGACATGGGTGCTGCAGGCTGAGACGGAGCTGCGCTTC
GACGTCTCTGCGGAACATACTCTGACGGTCGTGGTGAGTAACCTCGAGTA
GATGCGGAAGCACCTGTGGACATACAGCAGTAGTCCGAGCAGGTACAGGA
GTGATGGTACGAGTGCTGTCGTACTGCTTTTCTCTTGCTCCTGTGGACGG
TTGATGCTGACTACAGGTCATATGGCACCACAGACTGTTTGCAGCTTCAA
ACGGTTGTACCAGTGTGTACAGCAGCAGTGCGCCGCTGCGAACAAATTAC
TATCATCAACCCATACTGTATATTGTTTCTAACTTCGAATGCGAGTCATT
CAATTTAGAGGAATGGCCAAAAACGGGTATACCCGGTGGTTTTGTGGCCG
TCATCGGGCACCCTTGTTTTCCGCCGATAGAAATGGTCTCAGGGAGCAAT
CCCATTGGCCAAACCGCGCCGCCTCCCGGTCCTGGCCAGATTTCTGCCAG
GTATACCCGGTTTTGGCTACTTTCCCCGCGTGAGCTACCCGATTTTCACA
TACACTACTCGAAAGTGGTCCGACAAACTCTATAACTAAGTTATACAATT
TCTTATATTTCATGTGTCAAATATCAAAATATCAATTCTGATTCGTTTTC
GATATTGACAATTCCCACCGGGTGGTATCAACATCGGATCTTATGTGTAA
ATAAACAATTTATCAAGATCGAAAACCCATTTTTCGTACAGCAGTACAGC
AGTATCGTATGTGTAGGATCCCCTCCCCGGCCAGCCAATCATAGGCGGGG
GATTTGGCTGAAAATTTTAGGCGGGGGCTTGACTATAAAAGCAAATGAAA
AACCTCTCCAAAAATCTCGGCATTCCAAGGTATTCCGCCGCGTGGAACAC
TTCTCTTGCCCGAGGTTTTTAGACTGGGGGAGGACCACAGCAGCAACAAC
AGCAGTACAGCAGTATTCCATCAAATTACCTCCTCTGGTGCGCAGCTGTA
TGTCAGGCCTAATGACACGACGTGTAAATAAGGACGGCGGACCAACCTCT
TTCTCCCCTCCCCGCGAGCAACAACCTTTCTCAGACCGGTGCTGCTGTTG
GCGACCCCGAAAAAACACATCGCGACTGACTGCTGTAAGCTAGATCCATC
CATGATGACCGAAAGCGTTTTTCTGAAACGTTTGTTCTACCGAGCATGAT
GATACTACCACTCACTACTACTGCTGCTGTGTAGTAGTACTGCTGTATGA
TAGACTCACACGTACATACATGTGCGCGAAAGACGAAGCTACATCTCGCC
CACCCTGCAGAAGTAGTCGTAGGCAGGTCCGCTCGTCGTAATCTTTGGGA
GCAAGTATTCCGTGAAAACGTGACGTACAAACATCGACGAAGGATATGGC
CCTACAGGACAGCAAGCAGCAGCAGTAGTAGTGGTCGTGGAAACATATTT
TTCTCGCTGCGCACGGGACCCGACGACCTAGAAACTTGGCCGTGCCAGAT
CGAAAATAGACTCATCTCTCTAGGGGTGTAGTTGGCATCGAGTTACAAAC
CCTTTTGGGCGAGATATGTGCGGCTTTTGATATGCAACATCTGTGCCAGC
ACAAGGACAAGAGTTCCTCTGCCGTCCCCCAGCCGGGGTCCCCCGCTTGC
TTTCGTAGATTTCACAGTGATGGAATGACCTGGAATAGCCAATCTACGCT
GTTCCTTGGTGGAACAGAGGAATGTTCCTCCTCACGCAAACAACAAGTAT
TTTTTGCGGCCAGCGAAGCTTTCCACGCCAAGAAGGGCCAGCCAATCATA
GGCGGGGGATTTGGCTGAAAATTTTAGGCGGGGGCTTGACTATAAAAGCA
AATGAAAAACCTCTCCAAAAATCTCGGCATTCCAAGGTATTCCGCCGCGT
GGAACACTTCTCTTGCCCGAGGTTTTTAGACTGGGGGAGGACCACAGCAG
CAACAACAGCAGTACAGCAGTATTCCATCAAATTACCTCCTCTGGTGCGC
AGCTGTATGTCAGGCCTAATGACACGACGTGTAAAGAAGGACGGCGGACC
AACCTCTTTCTCCCCTCCCCGCGAGCAACAACCTTTCTCAGACCGGTGCT
GCTGTTGGCGACCCCGAAAAAACACATCGCGACTGACTGCTGTAAGCTAG
ATCCATCCATGATGACCGAAAGCGTTTTTCTGAAACGTTTGTTCTACCGA
GCATGATGATACTACCACTCACTACTACTGCTGCTGTGTAGTAGTACTGC
TGTATGATAGACTCACACGTACATACATGTGCGCGAAAGACGAAGCTACA
TCTCGCCCACCCTGCAGAAGTAGTCGTAGGCAGGTCCGCTCGTCGTAATC
TTTGGGAGCAAGTATTCCGTGAAAACGTGACGTACAAACATCGACGAAGG
ATATGGCCCTACAGGACAGCAAGCAGCAGCAGTAGTAGTGGTCGTGGAAA
CATATTTTTCTCGCTGCGCACGGGACCCGACGACCTAGAAACTTGGCCGT
GCCAGATCGAAAATAGACTCATCTCTCTAGGGGTGTAGTTGGCATCGAGT
TACAAACCCTTTTGGGCGAGATATGTGCGGCTTTTGATATGCAACATCTG
TGCCAGCACAAGGACAAGAGTTCCTCTGCCGTCCCCCAGCCGGGGTCCCC
CGCTTGCTTTCGTAGATTTCACAGTGATGGAATGACCTGGAATAGCCAAT
CTACGCTGTTCCTTGGTGGAACAGAGGAATGTTCCTCCTCACGCAAACAA
CAAGTATTTTTTGCGGCCAGCGAAGCTTTCCACGCCAAGAAGAGCCGTTT
GGGTAGTAGACTATACAGCACATTTCAAAATTTGGAGCGAGCGCAGCACC
CTCTCGGGATGGAGCACGACGAGCTGTGTCACAGCCAGAACAGAGCAGCA
CCGCGCGCAAACCGTAAATCTAGACAACAAGGTGGTGTCCCTCCCGCTCA
ACTACTCGGAGTACACCCAGACCTAAATATTTCAAGCTTGTTTTGGGAGG
CTATTCGTAGCAAGAACAAGTACTGCTGATGATTCATATGCAGGGCATCT
ATCTGCACAGCAGCAGTGTACGCGTGCTTGAAGGTGAAATACAATCAGTC
GCTCTCTGCTGCTGCCGCCATGGGATGAAGGGCCACGCTGCTGGCGGGCG
ACGACGAGGAAGTAACACGCTGACCCCCGCGATAATGTAGCAGCAGCAGC
GGCAGTAGTGATGTGGCAGTACTGCTGCTGCTGCTGTGGGTGCTTGTGTT
GTATGATGGCTTGCGTCGGAGTCTCAAACGTTTTCAACAATCATTTTTGA
TACGCGGAGTAGATCAGAAATGAGGCTCATTTCTTAGCTGGTGCTGGATC
AAAAATGATTATTGAAGATGTTTTTATCAAAAATGGCCCATTTCTGATCA
CATAACATGCCAGATCTGGGCCAAATATCGAAAACGAATCAGTTTTGATA
TCCAGGTTCGACACTAATAGTAGCCTTTTTAGGCTACTTATTATGTGTCA
ATAATGAAAATATCAAAACTGGTTCGTTTTTGACATTGGCAATTCCCACA
GGGTGGTATCAACATCGGATCTTATGTGTAATTAAACAATTTATCAAAAT
CAAAAACGTATTTTTCGTACAGTACAGCAGTATCATCGTATATATACGTC
GTATGTAGGATCCCAAGACAAGAGCCGTTTGGGTATACAGCAATACAGCA
CATTTCAAAAACTTGGAGTGAGCGCAGCACCCTCTCGGAATGGAGCACGA
TCTCGGGATGGAGCACGACGCGCTGGGTCACAGCTAGAACAGAGCAGCAC
CGCGCGCAAACCATAAATCTAGACAAGGTGTTGTCCGTCCCGCTGAACTA
CTCGGAGTACACCCAGACCTATTTCGAGCTTGTTTTGGGAGACTATTCGT
AGCAAGAACAAGAACTACTCGTTGATGATTCATATGCAGGGCATCTATCT
GCACAGCAGCAGTGTACGCGTGCTTCAAGGTGAAACGCGATCAGTCGCTC
TCTCTGCTGCTGCTGCCGCCATGGGATGAAGGGCCACGCTGCTGGCGGGC
GACGACGAGGAAGTAATACGCTGACCCCCGCGATAAGTAGCAGCAGCAGC
AGTAGTAGTGATGTGGTAGTACTGCTGCTGCTGTGGGTGCTTGTGTTGTA
CTGTATGATGGCTTGCGTCGGAGTCTCAGTCGTTTTCAATAATAATTTTT
GATATGCGGAGTAGATCAGAAATGAGGCTCATTTCTGAGCTGGTGCTGGA
TCAAAAATGATTATTGAAAACGTTTTTATCAAAAATAGCCCGTTTCTGAT
CACATAAGATGCCAGATCTGGGCCCAATATCAAAAACGAATCAGTTTTGA
TATCCAGATTCGACACATAATAAGTAGCCTTATAATGTACTTCGTGACGT
ATGCGTATGATCATAGACGATGATGCCAGTCTCCCACGCAATACCCCTAC
TGTACTACTCCTGTAGCACAACCACTACTGCTGCCGACTGTCATAAGCGC
GTGCGTGTGTGTGGTGTGTGACAGAGAGGAGATGTATGACGGGATATGGC
AGCACAACAATATGATACGAAGAACATTATGACTACAGCAGCAGTAGCAG
TGTAAACATGAAATGTAAACATGAAATATGACTTAGTTATAGAGTGTGTC
GGGCCACTTTCGGGTAGTGTATGTGAAAATCGGGTAGCTCCCGCGGGGAA
AGTAGCCAAAACCGGTTAAATCTGGCAGAAATCTGGCCAAGACCGGGTGG
CGGCGCGGTTTGGCCAATGGGATTGCTCCCTGAGACCATTTCCATCGGCG
GAAAAGAAGAGTACCCGATAATGGCCACAAAACCACCGGGTATACCCGTT
TTTGGCCATTCCTCTTCAATTTAGCAGTGCCACCAACAATCAAAGAGCCA
GCGGCAGCAGCAGCAGCAGCGGAGGCAGCAGCAGCAGCAGCGGTAAAAAC
GGCGTATGACACGAAGTATAACTGTACAGCAGAATTGGCGGTCCTGCTTT
CCCCCCTCCATACGAGCTTATGAGTCTGGAGAACAAAACAATTCGCTCCA
CCGCCGCCCCAACAACAAAAACAAGTAGCTTCGACCAATGCCCGCACACA
GCAAAGTAGCGCGATTTTGCCCTTGACACGAGTACTGCTGCTGCTGCTCT
ACTGCTGTACACAGCAGCTGTTGCTCGATTTTGGGTTGTTGATGCTCAGG
GTCTTTCGTGTCGGGTGCAGAACACAGAGCAGCGTAACCAAAATTCATGG
TTGTTCTCCAGCTTCAGAGGCCATCAGCTCTCACCCCTAACGTACAACTG
CTGTACCGCTGCAGATCGTAGTTTCCGCCGTTTATCTACCGTTTTCTTGT
AGCAATCGCTGCTGCACAAGTATTTTCCCTTTCGGGCTCTCGTTACTTCG
TCTCTCTCCCCTCGCGTGAGGACAGCTGCTCTCGCCACTTTCAATCAACA
TCTTGGATAAAATACTGGTGGACTAAACATGCAACTCAAGACACGCTATG
ATGCAACCATCATATACCATACACACAGCAGCATGATTCTCATATACTGG
CATGTACCGGTACTGAGTTTTGTGAAAGCTCATTGCCGTGCTTCTCCACA
CGACCCCACATACTCCACTCACCCCACTCACCCCCCCCAACGCCCGCCAC
CGTCGCCGCCGCCGCCACCCACCTCTGCCAGCTGAAAGAAAACACAGCGG
AGATGTTCGGGATTGAGCTCGCCGCGGAGTACGAGTATAAATTTTCCTCC
TCTAAGGTAAAAGAAATACTTGTTGCACGTCAGTAAGGAAGAAAAACAAA
AAATATGGGAAAACGAAGGGAGGGGTATAATGTGACGCATAAACGCGAAG
GGTAACTTGCAGAAAGCAACCGCACTAGACCAAAAGTGAAGCCATGCGCC
CCCCCTTGCCGGACGCGGGTGGCATGGCGGGGGGTGAGGGGGGTACCTTG
CTTCTTGTGGCATTACGAGGCGGCAGCCCCGGGTGGAGAAAAATGCGTTC
CCCCTTCTGTGTTTTGCGGATTGCTCCAGTCCAACGATATCTTGTCCCGT
TTGTTGTTCTTTTCGAACATGCGTATCGAAGGGGTTGATCCACCAGTGGT
TCACGGACGATGGTTTGGGAAAAACAACAGCAGCATGAGTGAATACTACG
TACAATACCCCCCCCCCCCCCGCCGCCGCCGCCCCCCTCACCCCGTGTGA
CACCGCCGCTGCTGCGATACATATATCGCATGCACGACAACACGTACAAA
AATAAAATCAACAGGCGGCCGTTTTCACGTGGTACGGCTGCACCATTGAG
ACGACGGGGTGGGTGTCGAGCATCTACGTGGCGCAGGAGACACCCATGAA
GAGCTACGTCAACACGCACGCGCAGCTGGAGGCGAGAAGGGACAAGGCTC
TGCAGGCTCTGCAGGCGGGCCGCACGAACGTCACTGGCCCAAGGGTGATT
GAATGATGAGCAGTTGCCGTTGTTCGTTGCTGTCGTTGTCTTGTTGTCGT
TCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCTTGTTCTTGT
TCTTGTTTTTATTCTTGTTCTTGTCGTCGTCGTCGTCGTCGTCGTCGTCG
TCGTTATGTCGTTGTCTCTCTTCTCTCCGTGAGGGAGTTGTCAAGATGAT
GGTCGTGAGCGAGAGTAGTGAGACACCTGCTGTGAACAAAGCATGGCTCT
GCCGTCGATGTCGTATTCGAAACCTTCCCCAACCCCCCAGCCCCTTTCTC
AAATGAAACCTCCCCGTCAACTTTCCGCGCACTGATCCAACCGATTTCAT
TGTTGCTCTCTTGCTTCTGTCTTCTCACCTCTCCATTCTGATCCAACCGA
TATCGTCGTCGTTGTCGTTGCTATCGACATTTCTATCCCCCTGGTGACTT
TCCATCAGATTTCCGCATATACTGATCAAACCGACCGATTCCGTTCGTTT
TTCGTTTGTGTTGTTGCTGCTGCTGCTGTTGTTATTGTTATTGTGAAGGT
GATGGTCGTGGGAGAAGCGGATAGCGGGAAGTCCACCCTGACCAACATCT
TGGCAGCCTACGCCGTCAGGCTAGGCCGATGTCCGACCTTCGTCGACCTT
GACGTGGGCCAGGGGATGATAACGGTCCCCGGGGGCATCGCTGCCGCGGC
CCTCGATAGCAACTCAATGTCCGTGGAGGTGGGTGGGCGTGGCAATGGTG
GTTTGAACGATGCGCTGTTTGTTGTTGTTATTGTTGTTGTTTTTGTTCGT
GTGTCGTTCTTGTTAGTGGTGGTGGTTGGGGTGGTGGTGGTGGTGGTCGG
GTGGAAGTGGTTTCCGTTGTTGTTGTTGGTGCCGTTGGTGCTGCAGATGC
ACGACTCACGCTGCTGCGGCTTTTGCATGGCTTTCGATCACATCCCCGCA
GGAGGGCTTTTCGTTGACCGCGCCGCTAGTGTTCTTCTACGGGCACACCA
ACCTGCAGGAAAATCCGGAGCTGTTCAAGAAGCTCGTGGTTAGTATAACC
CGGTAAAAAGTTGTCGTGTACTGGTACCTTTCATTTCCATGCCAACAAAG
TGCATTCCGTACAGCAGTAGCACGCGTTCACCGGTATTCATTTCGTGGTG
ACAGTTTTCTTTAAAAAAACAGCCACATTGGCAAATAGAATATCATACCC
AAAGCTAACTGACCGCGTGTTTCGCCGACGTGGCTGCTTCTTGATTAGTA
TCGCTATTATTATCATTACAACCCACTTTACTGCTGTTGTTATAGAATTG
TTGTTATTTTTTTCGTATTATTTCACTTAATGATAATTATTATTATCATT
TTATTTTCATTTATTTTACTATTGTTATTATTGTCATTCCTGTGTGCGTG
TGGGCGTGCAGGAGCGAATGGCGGAGTGCCTTAAGAGGAGGGTCGCCAAC
GATATCGACGCCAGCGCTTCCGGTGCAATCTTCAACACGTGCGGGTGAGC
GCCTCGAGTGGGGAAAGAGGACAAGACGGAGAGACACACAGCATATCGTT
TCATGGCACGTATGCAACATCATACAAGCAGGACAAGTGTTGGGGGGGGG
GGGGATGGGCAGCATACGGTTCACTAATTGCTGCAAGTGGCGGTCTCTGA
GCTTGAAACCGGAAGCACTAGCTAGCTAATCCTCGCCATCTGATGATACC
TTGTGCTTGGAGTATCTTGCCGTATTTATCTGCATATGATCTGCTGTATC
GCCCTTGCACAAAACAAAACGACTAGAATTGACAATTACCACTTAAAAAT
GTGGAAGAACGCATGGTCTGTCCGTCTGTCGTTTTACAAAATATAAATTC
ACGTATGATAGGTGGGTGGAAGGGCTGGGTCTGCAGCTGCTGGCGCACGC
CATTACCGTGCTGGATATCGACGTGGTCCTGGTCATGAAGCACGACCGTC
TGTACGCAGACATGGTGGCGACGCTACCCCGCTCAGTGGCCGTCATCAAC
TTGCCGCGCTCTGGAGGTACGTGTGCTTGTTGTTGTTGTTGTTGTTGTTG
TTTCGATTGTTCTTCAATTGAAACACGCACCGCGCAGCAAGTACGCGAGA
GTATATACCATAGATACAACCTCCTCCTTGGTCCCCCCCCCCCCCCCCGC
CAACTTCACCAAACTTCCCCCCCCCCTCCCGGCCACTGTCCCCCGCCCCA
ACCCCGCACCGATCCCAACAGGCGTAGTTTTGAGAAGCCCCACCCACCGA
CGGGCGTCGCGCGACCGACGGTGCCGTGAGTACTTCTACGGCGGCGGCGG
CGGCGCTTCAGCGGTGGGCGGGGCACCCGCGCTGTCGCCGGCGGCTCTTC
ACCTGGAGTTCAACGACGTCAGCATCTTCCGGGTGGGCGGACAGATGGTT
TCGGACGCGATGTTACCGGTGGGGCACTCGGATACGAGCCTCGGACCTCT
TCAGGTTTGTGTGTGTTTGTGTGTTTTCTGGGGAGGCGGTTGGTGGGGCG
ATGGGGGGGGGGGGCAACATTGGTTCCATTATTGCGATACATTTCCTTAC
TCGTGTTGTTTCTGTGTCTCTCTCTCTTTTGCTTTCTGTGTGTATTCTCT
CTCTCTCTCTCTGCTCTTGTCGCTTGTCTTTTTTTTTTCCTTCATTTCTC
CTTTTGTCTTTTTGTCTTTCTTCCGTAAACGTTCACCGGCCGCGTTGTTG
TCACATACGCTTGGCGCCAAAAGTCGAGCCCGAGGAACGTAGTGTGCCAG
GAGGAAAGATTCAAAAATTCATCAAATATGAAATCAGTGAAGGCCATACG
CATTAAAAAAAAAAAAACAGGAACAGGTACACCAGTACCGCCCACTCGAG
GGGTATCTCTTGTTTGGGCCAAAATACCAAAAATACAGAAACACAGACTC
GAAAACCTTGAAACCAAGAGAAACCAAAACGAAAGGCCAAAAGAAAGCAG
TTCGAGAACAAGAGAAGGCGGAAGCAGAGATACAGAAATGATGGAAAAGG
AGGCGAAACAGAAACAGAGAAAAAGCAAGAGAAAGAAGGAACAGGAAGAA
TAAAGTAAAATGATTATGTCATACGTGGCTGTAGTGTGCGCTTCCCCGCC
CTCCACGCGCCCTCACCGTCCTGTAGGCCAACCCGCAAACCCGCAAACCC
TTTCACTCTCCACAGCGTGTTGTGTTACTAGTGGCGCGCAGCCCAACCAA
CCCGCCCACGAAAATCGATATCTTCTCCCTTTCCCCCTCACGTGTGCATG
CCTACCTTCTCGTCAGTAAACCCGTAAAACCCCCCGTTCCCGACGCCTGC
ATGCTTCCACTCTTGAGCAAATCCAAAAAACTCCCCCCCCTCCTCCCCGT
ACATGCATATGATACATGCCATCCTCCTTTTAGGTAAACCCGTTGTATCC
CTCTTCGGATCTTCTTCATACCGTGCTGGCGGTGTGCCATCCGGTGCTGC
GTCAAGACGGGACTATGCTGGGCGGTGCTTCGGGGCTTGAGGGGGACAGA
GATTCGGCGGAGGCAGCGCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig101:56660..66730+

>mRNA_P-littoralis_Contig101.12.1 ID=mRNA_P-littoralis_Contig101.12.1|Name=mRNA_P-littoralis_Contig101.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1314bp|location=Sequence derived from alignment at P-littoralis_Contig101:56660..66730+ (Pylaiella littoralis U1_48)
CGGGCTTACACACACAAGAATGTCATCTGCTGTCGACTCTTGAATAACGT
ACGGAATAGTGGAATGGCAACTTATTCGGCAGGAGCAACAGCAGGAGCAA
AGGTAGAGACTCGGACATGGGTGCTGCAGGCTGAGACGGAGCTGCGCTTC
GACGTCTCTGCGGAACATACTCTGACGGTCGTGCTGAAAGAAAACACAGC
GGAGATGTTCGGGATTGAGCTCGCCGCGGAGTACGAGTATAAATTTTCCT
CCTCTAAGGCGGCCGTTTTCACGTGGTACGGCTGCACCATTGAGACGACG
GGGTGGGTGTCGAGCATCTACGTGGCGCAGGAGACACCCATGAAGAGCTA
CGTCAACACGCACGCGCAGCTGGAGGCGAGAAGGGACAAGGCTCTGCAGG
CTCTGCAGGCGGGCCGCACGAACGTCACTGGCCCAAGGGTGATGGTCGTG
GGAGAAGCGGATAGCGGGAAGTCCACCCTGACCAACATCTTGGCAGCCTA
CGCCGTCAGGCTAGGCCGATGTCCGACCTTCGTCGACCTTGACGTGGGCC
AGGGGATGATAACGGTCCCCGGGGGCATCGCTGCCGCGGCCCTCGATAGC
AACTCAATGTCCGTGGAGGAGGGCTTTTCGTTGACCGCGCCGCTAGTGTT
CTTCTACGGGCACACCAACCTGCAGGAAAATCCGGAGCTGTTCAAGAAGC
TCGTGGAGCGAATGGCGGAGTGCCTTAAGAGGAGGGTCGCCAACGATATC
GACGCCAGCGCTTCCGGTGCAATCTTCAACACGTGCGGGTGGGTGGAAGG
GCTGGGTCTGCAGCTGCTGGCGCACGCCATTACCGTGCTGGATATCGACG
TGGTCCTGGTCATGAAGCACGACCGTCTGTACGCAGACATGGTGGCGACG
CTACCCCGCTCAGTGGCCGTCATCAACTTGCCGCGCTCTGGAGGCGTAGT
TTTGAGAAGCCCCACCCACCGACGGGCGTCGCGCGACCGACGGTGCCGTG
AGTACTTCTACGGCGGCGGCGGCGGCGCTTCAGCGGTGGGCGGGGCACCC
GCGCTGTCGCCGGCGGCTCTTCACCTGGAGTTCAACGACGTCAGCATCTT
CCGGGTGGGCGGACAGATGGTTTCGGACGCGATGTTACCGGTGGGGCACT
CGGATACGAGCCTCGGACCTCTTCAGGTAAACCCGTTGTATCCCTCTTCG
GATCTTCTTCATACCGTGCTGGCGGTGTGCCATCCGGTGCTGCGTCAAGA
CGGGACTATGCTGGGCGGTGCTTCGGGGCTTGAGGGGGACAGAGATTCGG
CGGAGGCAGCGCAG
back to top