mRNA_P-littoralis_Contig1427.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1427.7.1
Unique NamemRNA_P-littoralis_Contig1427.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1427.7.1 vs. uniprot
Match: A0A6H5JXW8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW8_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.630e-43
Identity = 83/137 (60.58%), Postives = 97/137 (70.80%), Query Frame = 1 
Query:    4 APEGLRRQLRSLDLEGAARGLKNERRIKWKNNEDAFMYDLQKRCFDWLKEVRKNHTEFARKTNASGGAGADTDDEGDPENAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVR 411
            A E L+  L+ LDLEGAA+ L+ E R K+K +E AF  DLQ RCF+WLKEVR  HT+F      SGGAGAD   +G   NA HPF+FM GS+PTMLWEDGI L GG DD     G+ ++PD HPGSGSSVPGGPGVR
Sbjct:  121 ASEHLKSLLKRLDLEGAAKSLQEELRGKFKGDEGAFYADLQLRCFNWLKEVRGKHTKFKENEQRSGGAGADATQDGGFVNARHPFQFMRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVR 257
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BLAST of mRNA_P-littoralis_Contig1427.7.1 vs. uniprot
Match: A0A6H5JRU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU1_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.070e-41
Identity = 83/137 (60.58%), Postives = 97/137 (70.80%), Query Frame = 1 
Query:    4 APEGLRRQLRSLDLEGAARGLKNERRIKWKNNEDAFMYDLQKRCFDWLKEVRKNHTEFARKTNASGGAGADTDDEGDPENAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVR 411
            A E L+  L+ LDLEGAA+ L+ E R K+K +E AF  DLQ RCF+WLKEVR  HT+F      SGGAGAD   +G   NA HPF+FM GS+PTMLWEDGI L GG DD     G+ ++PD HPGSGSSVPGGPGVR
Sbjct:  484 ASEHLKSLLKRLDLEGAAKSLQEELRGKFKGDEGAFYADLQLRCFNWLKEVRGKHTKFKENEQRSGGAGADATQDGGFVNARHPFQFMRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVR 620
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BLAST of mRNA_P-littoralis_Contig1427.7.1 vs. uniprot
Match: A0A6H5KYJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ0_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 2.090e-40
Identity = 78/137 (56.93%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:    4 APEGLRRQLRSLDLEGAARGLKNERRIKWKNNEDAFMYDLQKRCFDWLKEVRKNHTEFARKTNASGGAGADTDDEGDPENAIHPFEFMSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVR 411
            A E L+  L+ LDLEGAA+ L+ E R K+K ++ AF  DLQ RCF+WLKEVR  HT+F      SGGAGAD   +G   NA +PF+FM G++P MLWEDGI L GG DD      + ++PD HPGSGSSVPGGPGVR
Sbjct:  121 ASEHLKSLLKRLDLEGAAKSLQEELRGKFKGDDGAFYADLQLRCFNWLKEVRGKHTKFGENEQRSGGAGADATQDGGFVNAHNPFQFMRGALPAMLWEDGIDLSGGGDDETYRPSDIVLPDGHPGSGSSVPGGPGVR 257
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BLAST of mRNA_P-littoralis_Contig1427.7.1 vs. uniprot
Match: A0A6H5JDY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.890e-21
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:  175 FARKTNASGGAGADTDDEGDPENAIHPFEFMSGSIPTMLWEDGIALLGGDDSKS-GAGEAIIPDSHPGSGSSVPGGPGVR 411
            F      SGGAGAD   +G   NA HPF+FM GS+PTMLWEDGI L GG D +S   G+ ++PD HPGSGSSVPGGPGVR
Sbjct:   96 FKENEQRSGGAGADATQDGGFVNARHPFQFMRGSLPTMLWEDGIELSGGGDDESYRPGDIVLPDGHPGSGSSVPGGPGVR 175
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BLAST of mRNA_P-littoralis_Contig1427.7.1 vs. uniprot
Match: A0A6H5JPA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.960e-12
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:  265 MSGSIPTMLWEDGIALLGG-DDSKSGAGEAIIPDSHPGSGSSVPGGPGVR 411
            M GS+PTMLWEDGI L GG DD     G+ ++PD HPGSGSSVPGGPGVR
Sbjct:    1 MRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSVPGGPGVR 50
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1427.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JXW8_9PHAE1.630e-4360.58Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU1_9PHAE1.070e-4160.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYJ0_9PHAE2.090e-4056.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDY9_9PHAE1.890e-2162.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPA4_9PHAE4.960e-1270.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1427contigP-littoralis_Contig1427:12193..13162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size503
Hectar predicted targeting categoryother localisation
Exons2
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789670.2943916-CDS-P-littoralis_Contig1427:12193..125231680789670.2943916-CDS-P-littoralis_Contig1427:12193..12523Pylaiella littoralis U1_48CDSP-littoralis_Contig1427 12194..12523 -
1680789670.3041933-CDS-P-littoralis_Contig1427:12991..131621680789670.3041933-CDS-P-littoralis_Contig1427:12991..13162Pylaiella littoralis U1_48CDSP-littoralis_Contig1427 12992..13162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1427.7.1prot_P-littoralis_Contig1427.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1427 12194..13162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1427.7.1

>prot_P-littoralis_Contig1427.7.1 ID=prot_P-littoralis_Contig1427.7.1|Name=mRNA_P-littoralis_Contig1427.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=167bp
KAPEGLRRQLRSLDLEGAARGLKNERRIKWKNNEDAFMYDLQKRCFDWLK
EVRKNHTEFARKTNASGGAGADTDDEGDPENAIHPFEFMSGSIPTMLWED
GIALLGGDDSKSGAGEAIIPDSHPGSGSSVPGGPGVRTAKERVRTGAQDP
TTVSKESTVKVEKRDRK
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mRNA from alignment at P-littoralis_Contig1427:12193..13162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1427.7.1 ID=mRNA_P-littoralis_Contig1427.7.1|Name=mRNA_P-littoralis_Contig1427.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=970bp|location=Sequence derived from alignment at P-littoralis_Contig1427:12193..13162- (Pylaiella littoralis U1_48)
AAAGCGCCGGAGGGACTCCGTCGTCAATTGCGCTCTCTAGATCTGGAGGG
GGCTGCCCGAGGTCTGAAGAACGAACGTCGTATCAAGTGGAAGAACAACG
AGGACGCATTCATGTACGACCTGCAGAAACGCTGTTTCGATTGGCTGAAG
GAAGTGAGGAAAAACCACACGGTGAGCGAAGCCTATGGAGTAAACGTTGT
GCATCTGTTGGCAACGCTTACTCATCGAAACACTACGTAGGTGTGTCTCT
AGTCGGCATTCGTACCGTCGGGTGCGTACAAACCAGGGCACATCAGCTCG
TGCGCGTGAGTTTTTTTCGCTCAGAGGTTTGGCGGTGCCTCACGCGTCTT
TTGTTTTTAGTGGGCAGTGTTGCATTCCTGAAAGTCCTTTTTCGTGTCCT
GCTTGTGTCAGATTTTACCGCACCCACGAAGTAACCGACGGCATGTCGTA
GTGGTCTCCAACGCAACCAAACATCTCGTGATTGCACCAACTACGCTCGA
ATCACATACACGGACGGCCAGCTTGGGTTCAGTTTGCTACCAACACGAAC
GATGACCCCCCCCCCCCAAACATCCCCTGTTACCCCCGCCCATCCGCCTC
TGTGCCATTCGCTTTACGTAATGGGTATGGGCGTGGCAGGAATTCGCGCG
CAAAACTAATGCGAGCGGGGGAGCCGGGGCCGACACTGACGACGAAGGAG
ACCCCGAAAACGCAATACACCCGTTCGAGTTCATGTCCGGCTCTATCCCT
ACTATGCTATGGGAGGATGGTATTGCGCTCCTTGGCGGTGACGACAGCAA
GAGCGGCGCCGGCGAGGCAATCATCCCAGATTCCCACCCAGGCTCTGGCA
GCAGCGTGCCTGGTGGCCCGGGTGTACGAACGGCGAAGGAAAGAGTACGC
ACTGGTGCCCAAGACCCTACAACGGTCAGCAAGGAGAGTACGGTCAAGGT
GGAGAAAAGAGACAGAAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1427:12193..13162-

>mRNA_P-littoralis_Contig1427.7.1 ID=mRNA_P-littoralis_Contig1427.7.1|Name=mRNA_P-littoralis_Contig1427.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig1427:12193..13162- (Pylaiella littoralis U1_48)
AAAGCGCCGGAGGGACTCCGTCGTCAATTGCGCTCTCTAGATCTGGAGGG
GGCTGCCCGAGGTCTGAAGAACGAACGTCGTATCAAGTGGAAGAACAACG
AGGACGCATTCATGTACGACCTGCAGAAACGCTGTTTCGATTGGCTGAAG
GAAGTGAGGAAAAACCACACGGAATTCGCGCGCAAAACTAATGCGAGCGG
GGGAGCCGGGGCCGACACTGACGACGAAGGAGACCCCGAAAACGCAATAC
ACCCGTTCGAGTTCATGTCCGGCTCTATCCCTACTATGCTATGGGAGGAT
GGTATTGCGCTCCTTGGCGGTGACGACAGCAAGAGCGGCGCCGGCGAGGC
AATCATCCCAGATTCCCACCCAGGCTCTGGCAGCAGCGTGCCTGGTGGCC
CGGGTGTACGAACGGCGAAGGAAAGAGTACGCACTGGTGCCCAAGACCCT
ACAACGGTCAGCAAGGAGAGTACGGTCAAGGTGGAGAAAAGAGACAGAAA
A
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