mRNA_P-littoralis_Contig1427.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1427.1.1
Unique NamemRNA_P-littoralis_Contig1427.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Match: D7G473_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G473_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.010e-45
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKK-KSKD 240
            ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKK KSKD
Sbjct:  170 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKSKD 250
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BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Match: B7G8V5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8V5_PHATC)

HSP 1 Score: 135 bits (340), Expect = 3.490e-37
Identity = 66/80 (82.50%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKKSKD 240
            ARIVALNSHYFLKNGGH VI+IKASC+DSTA+PEAVF +EV KL++ENFKP EQVTLEPYERDHAVV+A YRP KKKSK+
Sbjct:  238 ARIVALNSHYFLKNGGHAVIAIKASCIDSTAAPEAVFQREVEKLRSENFKPIEQVTLEPYERDHAVVVAEYRPKKKKSKE 317
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BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Match: A0A835Z838_9STRA (Fibrillarin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z838_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.710e-37
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKK 228
            ARIVALNSHYFLKNGGHCVIS+KASCVDSTA+PEAVFAQEVSKL++E FKP EQ+TLEPYERDHAVV+A YR  KK
Sbjct:  170 ARIVALNSHYFLKNGGHCVISVKASCVDSTAAPEAVFAQEVSKLRSEGFKPLEQLTLEPYERDHAVVVAEYRAAKK 245
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BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Match: A0A1E7FV03_9STRA (Fibrillarin n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV03_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.220e-36
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKKSKD 240
            ARIVALN+HYFLKNGGH VI++KASC+DSTA+PEAVF +EVSKL+ ENFKP EQ+TLEPYERDHAVVIA YRP K KS D
Sbjct:  147 ARIVALNAHYFLKNGGHAVIAVKASCIDSTAAPEAVFRREVSKLQKENFKPLEQLTLEPYERDHAVVIAEYRPKKSKSSD 226
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BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Match: A0A3P7DE58_WUCBA (Uncharacterized protein n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A3P7DE58_WUCBA)

HSP 1 Score: 127 bits (320), Expect = 2.060e-36
Identity = 62/77 (80.52%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    1 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKK 231
            ARIVA+N+H+FLKNGGH VISIKA+C+DSTA+PEAVFA EV+KLK E FKP+EQVTLEPYERDHAVV+A YRP KKK
Sbjct:   44 ARIVAINAHHFLKNGGHVVISIKANCIDSTAAPEAVFAGEVNKLKEEKFKPREQVTLEPYERDHAVVVAEYRPLKKK 120
[Close]
BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Match: A0A7R9WR07_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WR07_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.490e-36
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:    1 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRP-PKKKSKD 240
            ARIVALNSH+FL+NGGH VI+IKASC+DSTA+PEAVF +EVSKL++ENFKP EQ+TLEPYERDHAVVIA YRP  KKKSKD
Sbjct:  121 ARIVALNSHHFLRNGGHAVIAIKASCIDSTAAPEAVFRREVSKLQSENFKPLEQLTLEPYERDHAVVIAEYRPNKKKKSKD 201
[Close]
BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Match: A0A7S2UWV2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWV2_9STRA)

HSP 1 Score: 132 bits (331), Expect = 2.820e-36
Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKKSK 237
            ARIVALN+HYFLKNGGH VISIKASC+DSTA PEAVFA+EV KL+TE FKP EQ+TLEPYERDHAVV+  YRPPKK  K
Sbjct:  192 ARIVALNAHYFLKNGGHFVISIKASCIDSTAPPEAVFAREVKKLQTEQFKPAEQLTLEPYERDHAVVVGAYRPPKKAKK 270
[Close]
BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Match: A0A1Z5KF33_FISSO (rRNA 2'-O-methyltransferase fibrillarin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF33_FISSO)

HSP 1 Score: 132 bits (333), Expect = 3.610e-36
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    1 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKK 231
            ARIVALNSHYFLKNGGH VI++KASC+DSTASPEAVFA+EV KL+ ENFKP EQ+TLEPYERDHAVVIA YRP KKK
Sbjct:  238 ARIVALNSHYFLKNGGHAVIAVKASCIDSTASPEAVFAREVQKLQAENFKPLEQLTLEPYERDHAVVIAEYRPNKKK 314
[Close]
BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Match: B8CBC2_THAPS (Uncharacterized protein n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8CBC2_THAPS)

HSP 1 Score: 131 bits (330), Expect = 8.120e-36
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKKSKD 240
            ARIVALNSHYFLKNGGH VI+IKASC+DSTA+PEAVF +EVSKL++ENFKP EQ+TLEPYERDH V+IA YRP KKK  D
Sbjct:  224 ARIVALNSHYFLKNGGHSVIAIKASCIDSTAAPEAVFRREVSKLQSENFKPLEQLTLEPYERDHCVLIAQYRPSKKKKSD 303
[Close]
BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Match: A0A7S2VAU0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAU0_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.650e-36
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKKSKD 240
            ARIVALNSHYFLKNGGH VI+IKASC+DSTA+PEAVF +EV KLK+ENFKP EQ+TLEPYERDH V+ A YRP KKK KD
Sbjct:  248 ARIVALNSHYFLKNGGHAVIAIKASCIDSTAAPEAVFRREVDKLKSENFKPLEQLTLEPYERDHCVITAEYRPNKKKKKD 327
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1427.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G473_ECTSI1.010e-4598.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B7G8V5_PHATC3.490e-3782.50Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A835Z838_9STRA3.710e-3785.53Fibrillarin n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A1E7FV03_9STRA1.220e-3680.00Fibrillarin n=1 Tax=Fragilariopsis cylindrus CCMP1... [more]
A0A3P7DE58_WUCBA2.060e-3680.52Uncharacterized protein n=1 Tax=Wuchereria bancrof... [more]
A0A7R9WR07_9STRA2.490e-3681.48Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2UWV2_9STRA2.820e-3681.01Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5KF33_FISSO3.610e-3684.42rRNA 2'-O-methyltransferase fibrillarin n=2 Tax=Fi... [more]
B8CBC2_THAPS8.120e-3680.00Uncharacterized protein n=2 Tax=Thalassiosirales T... [more]
A0A7S2VAU0_9STRA9.650e-3680.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1427contigP-littoralis_Contig1427:165..696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G473
PFAMsFibrillarin
Model size246
Max annot lvl2759|Eukaryota
KEGG koko:K14563
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000494,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008213,GO:0008276,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0015030,GO:0016043,GO:0016070,GO:0016072,GO:0016074,GO:0016569,GO:0016570,GO:0016571,GO:0016604,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0022613,GO:0030684,GO:0031123,GO:0031126,GO:0031167,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032259,GO:0032991,GO:0033967,GO:0034470,GO:0034641,GO:0034660,GO:0034963,GO:0036009,GO:0036211,GO:0042054,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140096,GO:0140098,GO:0140102,GO:1901360,GO:1901363,GO:1901564,GO:1990258,GO:1990259,GO:1990904
Exons2
Evalue1.66e-46
EggNOG OGsCOG1889@1|root,KOG1596@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-02_001530.1
Descriptionhistone-glutamine methyltransferase activity
Cds size246
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789670.2106855-CDS-P-littoralis_Contig1427:164..2841680789670.2106855-CDS-P-littoralis_Contig1427:164..284Pylaiella littoralis U1_48CDSP-littoralis_Contig1427 165..284 +
1680789670.2213936-CDS-P-littoralis_Contig1427:570..6961680789670.2213936-CDS-P-littoralis_Contig1427:570..696Pylaiella littoralis U1_48CDSP-littoralis_Contig1427 571..696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1427.1.1prot_P-littoralis_Contig1427.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1427 165..696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1427.1.1

>prot_P-littoralis_Contig1427.1.1 ID=prot_P-littoralis_Contig1427.1.1|Name=mRNA_P-littoralis_Contig1427.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
ARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFK
PKEQVTLEPYERDHAVVIALYRPPKKKSKDA*
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mRNA from alignment at P-littoralis_Contig1427:165..696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1427.1.1 ID=mRNA_P-littoralis_Contig1427.1.1|Name=mRNA_P-littoralis_Contig1427.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=532bp|location=Sequence derived from alignment at P-littoralis_Contig1427:165..696+ (Pylaiella littoralis U1_48)
GCGCGTATCGTGGCGCTGAACTCGCACTACTTCCTAAAAAACGGAGGGCA
CTGCGTCATTTCAATCAAGGCATCATGCGTCGACTCCACGGCATCACCTG
AGGCAGTGTTCGCTCAAGAGGTACGATGTGTGAACTCTTTGTGCCCATTT
CACCTCGCATCCTGTGAGTATCGCCTACACTATTCGCCACTCTGAGCTCC
GAGTGTTGCGCTTCGGTTTCTTCAACTCGAAACGCATTTTTACAATTTTT
TGCTGTGCTTGTACACGAAGCATAACCAGTAAGCGCTTGCTTCAACATTT
TTACGATATACTGGATTGCACTCGCATCGCCGAGTTGCCCGAGGTTTTCG
GGTTGCTTACAACCACATCCTCGTCGTCGGGATGTTATTTTTTGCTGTGA
CTGCAGGTTTCCAAGCTGAAAACGGAAAACTTCAAGCCCAAGGAGCAAGT
TACCCTTGAGCCTTACGAGCGCGATCACGCGGTAGTTATTGCGCTGTACC
GCCCGCCTAAGAAAAAATCGAAGGATGCTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1427:165..696+

>mRNA_P-littoralis_Contig1427.1.1 ID=mRNA_P-littoralis_Contig1427.1.1|Name=mRNA_P-littoralis_Contig1427.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig1427:165..696+ (Pylaiella littoralis U1_48)
GCGCGTATCGTGGCGCTGAACTCGCACTACTTCCTAAAAAACGGAGGGCA
CTGCGTCATTTCAATCAAGGCATCATGCGTCGACTCCACGGCATCACCTG
AGGCAGTGTTCGCTCAAGAGGTTTCCAAGCTGAAAACGGAAAACTTCAAG
CCCAAGGAGCAAGTTACCCTTGAGCCTTACGAGCGCGATCACGCGGTAGT
TATTGCGCTGTACCGCCCGCCTAAGAAAAAATCGAAGGATGCTTAA
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