mRNA_P-littoralis_Contig1422.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1422.3.1
Unique NamemRNA_P-littoralis_Contig1422.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Match: S0A5R5_9CAUD (Anti-restriction protein n=1 Tax=Cellulophaga phage phi13:2 TaxID=1328030 RepID=S0A5R5_9CAUD)

HSP 1 Score: 136 bits (343), Expect = 1.710e-37
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 2
Query:  314 SYNIEDVDAFFDALEEAYVGEYKSDEDFAEDFAEQTGVEISNSWPHNCIDWERAARDLMYDYYESNGHYFRSL 532
            SY+I D+D FFDALE++Y G+Y SDEDFAED AEQTGVEISNSWPHNCIDWERAARDLMYDY ESNGHYFRS+
Sbjct:  116 SYDINDIDEFFDALEDSYSGQYNSDEDFAEDLAEQTGVEISNSWPHNCIDWERAARDLMYDYSESNGHYFRSI 188          
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Match: UPI0019B5F9DE (Antirestriction protein ArdA n=1 Tax=Flavobacterium sp. TaxID=239 RepID=UPI0019B5F9DE)

HSP 1 Score: 132 bits (332), Expect = 6.960e-36
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 2
Query:  314 SYNIEDVDAFFDALEEAYVGEYKSDEDFAEDFAEQTGVEISNSWPHNCIDWERAARDLMYDYYESNGHYFRSL 532
            +Y + D D FFDA+EE+Y GE+ SDEDFA+D AEQTGVEISN+WPHNCIDWERAARDLMYDYYESNG+YFRS+
Sbjct:  112 NYKVTDTDKFFDAIEESYCGEFSSDEDFAQDMAEQTGVEISNTWPHNCIDWERAARDLMYDYYESNGYYFRSI 184          
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Match: S0A274_9CAUD (Anti-restriction protein n=1 Tax=Cellulophaga phage phi18:3 TaxID=1327983 RepID=S0A274_9CAUD)

HSP 1 Score: 117 bits (293), Expect = 5.730e-30
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 2
Query:  314 SYNIEDVDAFFDALEEAYVGEYKSDEDFAEDFAEQTGVEISNSWPHNCIDWERAARDLMYDYYESNGHYFRSL 532
            SY+I D+D FFDALEE+Y G+Y SD +FAED AEQ  +EI N+WPHNCIDWE AA DLMYDY ES GHYFRS+
Sbjct:  116 SYDINDIDTFFDALEESYSGKYNSDAEFAEDMAEQLCIEIPNTWPHNCIDWESAASDLMYDYLESYGHYFRSI 188          
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Match: A0A150XCK2_9BACT (Uncharacterized protein n=2 Tax=Roseivirga spongicola TaxID=333140 RepID=A0A150XCK2_9BACT)

HSP 1 Score: 100 bits (250), Expect = 2.590e-23
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  314 SYNIEDVDAFFDALEEAYVGEYKSDEDFAEDFAEQTGVEISNS-WPHNCIDWERAARDLMYDYYESNGHYFRSL 532
            +Y+IEDVD FFDALEE+Y GEY SD DFA++ AE+ G       WP+  IDWE AARDLM DYYESNGHYFR++
Sbjct:  136 NYDIEDVDKFFDALEESYQGEYSSDADFAQELAEELGYTNEKVFWPYTHIDWEWAARDLMIDYYESNGHYFRAI 209          
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Match: A0A6H2A6A8_9ZZZZ (Putative bacterial antirestriction protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6H2A6A8_9ZZZZ)

HSP 1 Score: 79.0 bits (193), Expect = 4.910e-16
Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 2
Query:  356 EEAYVGEYKSDEDFAEDFAEQTG-VEISNSWPHNCIDWERAARDLMYDYYESNGHYFRSL 532
            EEAY G+Y+SDEDFA++ AE+ G +     WP+NCIDWE A+++LMYDY +S+G+YFR+ 
Sbjct:   39 EEAYQGQYRSDEDFAQNMAEELGTINQDAQWPNNCIDWEYASKELMYDYSDSDGYYFRNF 98          
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Match: A0A554VRQ6_9FLAO (Antirestriction protein ArdA n=1 Tax=Aquimarina algiphila TaxID=2047982 RepID=A0A554VRQ6_9FLAO)

HSP 1 Score: 79.3 bits (194), Expect = 2.940e-15
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 FLTDYASYNNGTQFEFGHWIDLTDFSDADELSEYIQNHFEEADAK 135
            FLTDYASYN GTQFEFGHW+DL D+SD  EL EYI NHF+E D K
Sbjct:   10 FLTDYASYNEGTQFEFGHWVDLDDYSDETELMEYISNHFDECDEK 54          
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Match: A0A0F9DIG8_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9DIG8_9ZZZZ)

HSP 1 Score: 76.6 bits (187), Expect = 4.400e-15
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  353 LEEAYVGEYKSDEDFAEDFAEQTG-VEISNSWPHNCIDWERAARDLMYDYYESNGHYFRS 529
            +EEAY GEY SDEDFA++ AE    V+ +++WP  CIDWE AAR+LM DYYE + HYFRS
Sbjct:   43 MEEAYQGEYASDEDFAQNLAEDLDTVDKNSTWPMYCIDWEWAARELMMDYYEIDRHYFRS 102          
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Match: A0A661H0F3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661H0F3_9GAMM)

HSP 1 Score: 77.0 bits (188), Expect = 1.890e-14
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    1 FLTDYASYNNGTQFEFGHWIDLTDFSDADELSEYIQNHFEEADAKT 138
            FLTDYASYN+G+QFEFGHW+DL  FSDA E S+YI NHF   DAK+
Sbjct:    8 FLTDYASYNDGSQFEFGHWVDLDQFSDAQEFSDYISNHFAMCDAKS 53          
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Match: UPI001E2B0622 (antirestriction protein ArdA n=1 Tax=Aegicerativicinus sediminis TaxID=2893202 RepID=UPI001E2B0622)

HSP 1 Score: 75.5 bits (184), Expect = 9.110e-14
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 FLTDYASYNNGTQFEFGHWIDLTDFSDADELSEYIQNHFEEADAKT 138
            FLTDYASYN GTQFEFGHW+DL +FSD +EL+ YI+ HF++AD ++
Sbjct:   12 FLTDYASYNAGTQFEFGHWVDLDEFSDIEELNHYIREHFKDADQRS 57          
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Match: A0A2H6FZX3_9BACT (Antirestriction protein n=1 Tax=bacterium BMS3Abin11 TaxID=2005719 RepID=A0A2H6FZX3_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 1.230e-12
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  329 DVDAFFDALEEAYVGEYKSDEDFAEDFAEQTG-VEISNSWPHNCIDWERAARDLMYDYYESNGHYFRS 529
            ++D   D  EE Y GE+ SDEDFA   A+  G V ++N WP + IDW  AARDLM DY ES GHYFR+
Sbjct:   99 ELDIEPDMTEELYQGEHGSDEDFAYQLADDFGLVPMNNDWPSSYIDWSAAARDLMMDYGESGGHYFRT 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1422.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S0A5R5_9CAUD1.710e-3783.56Anti-restriction protein n=1 Tax=Cellulophaga phag... [more]
UPI0019B5F9DE6.960e-3678.08Antirestriction protein ArdA n=1 Tax=Flavobacteriu... [more]
S0A274_9CAUD5.730e-3071.23Anti-restriction protein n=1 Tax=Cellulophaga phag... [more]
A0A150XCK2_9BACT2.590e-2364.86Uncharacterized protein n=2 Tax=Roseivirga spongic... [more]
A0A6H2A6A8_9ZZZZ4.910e-1656.67Putative bacterial antirestriction protein n=1 Tax... [more]
A0A554VRQ6_9FLAO2.940e-1575.56Antirestriction protein ArdA n=1 Tax=Aquimarina al... [more]
A0A0F9DIG8_9ZZZZ4.400e-1561.67Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A661H0F3_9GAMM1.890e-1471.74Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
UPI001E2B06229.110e-1467.39antirestriction protein ArdA n=1 Tax=Aegicerativic... [more]
A0A2H6FZX3_9BACT1.230e-1254.41Antirestriction protein n=1 Tax=bacterium BMS3Abin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1422contigP-littoralis_Contig1422:5117..5648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size532
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.7244265-UTR-P-littoralis_Contig1422:5116..52891680789669.7244265-UTR-P-littoralis_Contig1422:5116..5289Pylaiella littoralis U1_48UTRP-littoralis_Contig1422 5117..5289 +
1680789669.7454348-UTR-P-littoralis_Contig1422:5442..56481680789669.7454348-UTR-P-littoralis_Contig1422:5442..5648Pylaiella littoralis U1_48UTRP-littoralis_Contig1422 5443..5648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.7334256-CDS-P-littoralis_Contig1422:5289..54421680789669.7334256-CDS-P-littoralis_Contig1422:5289..5442Pylaiella littoralis U1_48CDSP-littoralis_Contig1422 5290..5442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1422.3.1prot_P-littoralis_Contig1422.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1422 5290..5442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1422.3.1

>prot_P-littoralis_Contig1422.3.1 ID=prot_P-littoralis_Contig1422.3.1|Name=mRNA_P-littoralis_Contig1422.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=51bp
MITDFEGFPKAFYSESSMNFEALFEYMERLESCGYEAEVVEAFAEIDRTI
*
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mRNA from alignment at P-littoralis_Contig1422:5117..5648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1422.3.1 ID=mRNA_P-littoralis_Contig1422.3.1|Name=mRNA_P-littoralis_Contig1422.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=532bp|location=Sequence derived from alignment at P-littoralis_Contig1422:5117..5648+ (Pylaiella littoralis U1_48)
TTTTTAACAGACTACGCAAGTTATAACAACGGAACCCAATTTGAATTTGG GCACTGGATTGACTTAACAGACTTCAGCGATGCGGACGAATTAAGCGAAT ACATACAGAACCACTTTGAAGAAGCGGACGCAAAAACCCTTTAGATAATT TTGGAAGTAAGAGAGAAGAGACAATGATAACGGATTTTGAAGGCTTCCCA AAAGCGTTTTATTCTGAATCGTCAATGAATTTCGAGGCATTATTTGAGTA CATGGAACGCCTTGAATCATGCGGTTATGAAGCGGAAGTAGTTGAAGCAT TCGCAGAAATTGATCGTACAATATAGAAGACGTTGACGCATTTTTTGATG CATTGGAGGAAGCGTATGTAGGAGAGTACAAAAGCGACGAGGATTTTGCG GAAGACTTCGCAGAGCAGACAGGCGTAGAAATTAGTAATTCATGGCCTCA TAACTGTATTGACTGGGAAAGAGCAGCAAGGGATCTAATGTACGACTATT ACGAGAGCAACGGACATTATTTTAGAAGTCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1422:5117..5648+

>mRNA_P-littoralis_Contig1422.3.1 ID=mRNA_P-littoralis_Contig1422.3.1|Name=mRNA_P-littoralis_Contig1422.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=153bp|location=Sequence derived from alignment at P-littoralis_Contig1422:5117..5648+ (Pylaiella littoralis U1_48)
ATGATAACGGATTTTGAAGGCTTCCCAAAAGCGTTTTATTCTGAATCGTC
AATGAATTTCGAGGCATTATTTGAGTACATGGAACGCCTTGAATCATGCG
GTTATGAAGCGGAAGTAGTTGAAGCATTCGCAGAAATTGATCGTACAATA
TAG
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