mRNA_P-littoralis_Contig1415.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1415.4.1
Unique NamemRNA_P-littoralis_Contig1415.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1415.4.1 vs. uniprot
Match: A0A6H5L341_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L341_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.700e-27
Identity = 62/157 (39.49%), Postives = 86/157 (54.78%), Query Frame = 1 
Query:    1 MLTKNKAHITENAARQISTPWDFKAEHFFPPMALGAALRAMPAPVHFATMVEVLMTAIKFGTETAPEICIGRIRSLRRELQLVVTRVNAYLQLHYDLLASFRTEVRNLLVEAINDGMNEGFHALAIRADELQGNCPHGAPAPGTTDSVAAPKFKRLK 471
            M+    +HITE   +Q+ +  D K EH FPP +  AAL AMP  VHF T + VL   I++G +TA E    R+ + R E   +  ++  YL LHY  L      VRN+L++AIN G+ +GF  L   A +L+     G P    TD+V  P+FK LK
Sbjct:  226 MVAGEYSHITEQGGKQMCSLTDIKIEHCFPPKSANAALAAMPVTVHFDTFITVLFKTIEYGMDTAEENAKLRVAAWRAEFASITRKLATYLTLHYTGLQPHENRVRNVLLDAINRGLEDGFRILHKMAYDLRWTHQDGPPTADATDAVPFPRFKLLK 382
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BLAST of mRNA_P-littoralis_Contig1415.4.1 vs. uniprot
Match: A0A6H5JGT0_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT0_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 4.080e-27
Identity = 62/157 (39.49%), Postives = 86/157 (54.78%), Query Frame = 1 
Query:    1 MLTKNKAHITENAARQISTPWDFKAEHFFPPMALGAALRAMPAPVHFATMVEVLMTAIKFGTETAPEICIGRIRSLRRELQLVVTRVNAYLQLHYDLLASFRTEVRNLLVEAINDGMNEGFHALAIRADELQGNCPHGAPAPGTTDSVAAPKFKRLK 471
            M+    +HITE   +Q+ +  D K EH FPP +  AAL AMP  VHF T + VL   I++G +TA E    R+ + R E   +  ++  YL LHY  L      VRN+L++AIN G+ +GF  L   A +L+     G P    TD+V  P+FK LK
Sbjct:  218 MVAGEYSHITEQGGKQMCSLTDIKIEHCFPPKSANAALAAMPVTVHFDTFITVLFKTIEYGMDTAEENAKLRVAAWRAEFASITRKLATYLTLHYTGLQPHENRVRNVLLDAINRGLEDGFRILHKMAYDLRWTHQDGPPTADATDAVPFPRFKLLK 374
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1415.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L341_9PHAE2.700e-2739.49Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGT0_9PHAE4.080e-2739.49Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1415contigP-littoralis_Contig1415:13647..14123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size477
Hectar predicted targeting categoryother localisation
Exons1
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.0716023-CDS-P-littoralis_Contig1415:13646..141231680789664.0716023-CDS-P-littoralis_Contig1415:13646..14123Pylaiella littoralis U1_48CDSP-littoralis_Contig1415 13647..14123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1415.4.1prot_P-littoralis_Contig1415.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1415 13647..14123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1415.4.1

>prot_P-littoralis_Contig1415.4.1 ID=prot_P-littoralis_Contig1415.4.1|Name=mRNA_P-littoralis_Contig1415.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MLTKNKAHITENAARQISTPWDFKAEHFFPPMALGAALRAMPAPVHFATM
VEVLMTAIKFGTETAPEICIGRIRSLRRELQLVVTRVNAYLQLHYDLLAS
FRTEVRNLLVEAINDGMNEGFHALAIRADELQGNCPHGAPAPGTTDSVAA
PKFKRLKH*
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mRNA from alignment at P-littoralis_Contig1415:13647..14123-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1415.4.1 ID=mRNA_P-littoralis_Contig1415.4.1|Name=mRNA_P-littoralis_Contig1415.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig1415:13647..14123- (Pylaiella littoralis U1_48)
ATGCTGACCAAGAATAAAGCCCACATAACCGAGAACGCAGCCAGGCAAAT
CAGCACCCCGTGGGATTTCAAGGCAGAACACTTCTTCCCGCCGATGGCCC
TTGGTGCTGCACTACGGGCCATGCCCGCCCCGGTACACTTCGCCACCATG
GTCGAAGTGCTCATGACTGCCATCAAGTTTGGCACGGAGACAGCGCCGGA
AATTTGCATCGGGCGCATCAGGAGCTTGCGAAGGGAACTCCAGCTCGTAG
TGACGCGGGTCAACGCATACCTGCAACTGCACTATGATCTGCTCGCCTCC
TTTCGTACGGAAGTGCGCAACCTCCTAGTGGAAGCAATCAACGACGGCAT
GAACGAGGGGTTTCACGCGCTTGCCATACGGGCAGACGAGCTTCAAGGCA
ACTGCCCGCACGGCGCGCCAGCGCCCGGCACGACGGACAGCGTGGCTGCA
CCAAAGTTCAAGCGCCTCAAACACTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1415:13647..14123-

>mRNA_P-littoralis_Contig1415.4.1 ID=mRNA_P-littoralis_Contig1415.4.1|Name=mRNA_P-littoralis_Contig1415.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig1415:13647..14123- (Pylaiella littoralis U1_48)
ATGCTGACCAAGAATAAAGCCCACATAACCGAGAACGCAGCCAGGCAAAT
CAGCACCCCGTGGGATTTCAAGGCAGAACACTTCTTCCCGCCGATGGCCC
TTGGTGCTGCACTACGGGCCATGCCCGCCCCGGTACACTTCGCCACCATG
GTCGAAGTGCTCATGACTGCCATCAAGTTTGGCACGGAGACAGCGCCGGA
AATTTGCATCGGGCGCATCAGGAGCTTGCGAAGGGAACTCCAGCTCGTAG
TGACGCGGGTCAACGCATACCTGCAACTGCACTATGATCTGCTCGCCTCC
TTTCGTACGGAAGTGCGCAACCTCCTAGTGGAAGCAATCAACGACGGCAT
GAACGAGGGGTTTCACGCGCTTGCCATACGGGCAGACGAGCTTCAAGGCA
ACTGCCCGCACGGCGCGCCAGCGCCCGGCACGACGGACAGCGTGGCTGCA
CCAAAGTTCAAGCGCCTCAAACACTGA
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