mRNA_P-littoralis_Contig1413.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1413.3.1
Unique NamemRNA_P-littoralis_Contig1413.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Match: UPI0010A4BC3C (uncharacterized protein LOC114741647 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4BC3C)

HSP 1 Score: 167 bits (424), Expect = 6.990e-50
Identity = 95/148 (64.19%), Postives = 103/148 (69.59%), Query Frame = 1 
Query:   46 SISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRR**LTNFFNLPALGRRQPPYVVLQLSGDLCFW*TVAWTLLLQP---NRYPFSRSYRVILPSSLERVISRPLVYSTNPPVSV*STGILYL*QCKLF 465
            SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF +LPALGRRQPPY+VL+L GDLCFW      L+       R+PFSRSY  ILPSSLERV+SRPL             GILYL  C  F
Sbjct:    2 SISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFWLNSRPGLVTATPFVRRHPFSRSYGAILPSSLERVVSRPL-------------GILYLPTCVGF 132
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BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Match: YCX91_PHAAO (Uncharacterized protein ORF91 n=6 Tax=Spermatophyta TaxID=58024 RepID=YCX91_PHAAO)

HSP 1 Score: 150 bits (378), Expect = 2.860e-44
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:   16 VQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRR**LTNFFNLPALGRRQPPYVVLQLSGDLCFW 285
            +QVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTV+VTAAVHRGF      HQ    +TNF +LPALGRRQPPY+VL+L GDLCFW
Sbjct:    1 MQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVLVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFW 91
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BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Match: A0A8J5E9C2_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5E9C2_ZINOF)

HSP 1 Score: 157 bits (396), Expect = 4.020e-43
Identity = 79/100 (79.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    1 GLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRR**LTNFFNLPALGRRQPPYVVLQLSGDLCFW 285
            GLSV V+VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF +LPALGRRQPPY+VL+L GDLCFW
Sbjct:   34 GLSVQVRVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFW 129
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BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Match: A0A5N5KVY8_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KVY8_9ROSI)

HSP 1 Score: 153 bits (387), Expect = 1.800e-42
Identity = 78/100 (78.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    1 GLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRR**LTNFFNLPALGRRQPPYVVLQLSGDLCFW 285
             L V VQVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF +LPALGRRQPPY+VL+L GDLCFW
Sbjct:  184 NLPVDVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFW 279
[Close]
BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Match: A0A072UJ16_MEDTR (Signal anchor, putative n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072UJ16_MEDTR)

HSP 1 Score: 150 bits (380), Expect = 6.270e-42
Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:   19 QVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRR**LTNFFNLPALGRRQPPYVVLQLSGDLCFW 285
            +VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF NLPALGRRQPPY+VL+L GDLCFW
Sbjct:  213 KVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLNLPALGRRQPPYMVLRLCGDLCFW 302
[Close]
BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Match: A0A8K0HCU7_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HCU7_9ROSA)

HSP 1 Score: 150 bits (378), Expect = 7.760e-41
Identity = 75/95 (78.95%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:   16 VQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRR**LTNFFNLPALGRRQPPYVVLQLSGDLCFW 285
            V VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF +LPALGRRQPPY+VL+L GDLCFW
Sbjct:  142 VDVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFW 232
[Close]
BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Match: A0A5N6N5S8_9ASTR (Uncharacterized protein n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A5N6N5S8_9ASTR)

HSP 1 Score: 152 bits (383), Expect = 9.780e-41
Identity = 76/95 (80.00%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:   16 VQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRR**LTNFFNLPALGRRQPPYVVLQLSGDLCFW 285
            VQVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF +LPALGRRQPPY+VL+L GDLCFW
Sbjct:  302 VQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFW 392
[Close]
BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Match: A0A5D2G3G1_GOSDA (Uncharacterized protein n=1 Tax=Gossypium darwinii TaxID=34276 RepID=A0A5D2G3G1_GOSDA)

HSP 1 Score: 140 bits (353), Expect = 4.630e-40
Identity = 71/95 (74.74%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:   16 VQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRR**LTNFFNLPALGRRQPPYVVLQLSGDLCFW 285
            V+VVRIFT  SI PSLS RQCP+RYAFRAGRNLPDKEF YLRTVIVTAAVH GF      HQ    +TNF +LPALGRRQPPY+VL+L GDLCFW
Sbjct:   32 VRVVRIFTGMSILPSLSPRQCPDRYAFRAGRNLPDKEFHYLRTVIVTAAVHWGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFW 122
[Close]
BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Match: A0A2N9EWN1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EWN1_FAGSY)

HSP 1 Score: 144 bits (363), Expect = 1.120e-39
Identity = 73/92 (79.35%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:   22 VVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRR**LTNFFNLPALGRRQPPYVVLQLSGDLCF 282
            VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF +LPALGRRQPPY+VL+L GDLCF
Sbjct:  188 VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCF 275
[Close]
BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Match: A0A6P5NU31_ARADU (uncharacterized protein LOC110281477 n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5NU31_ARADU)

HSP 1 Score: 141 bits (355), Expect = 2.100e-39
Identity = 83/146 (56.85%), Postives = 96/146 (65.75%), Query Frame = 2 
Query:   71 DSVQIVTPFVRVGTYPTRNFATLGPL*LRPPFTGASVI-SVVNN*PTSLTFRHWAGVSPHTLSYNLAETCVFGKQSLGPCYCNLI--GTPS-PEVTGLFCRVP*RELSRALWYT-LPTHLCRFRVQVFFTYDSASFSWKHNINYFN 493
            DS QIVTPFVRVGTYPTRNFATLG L L PPFTGASV  S V   PTSLTFRHWAGVSPHT SY+ AETCVFGKQS GP +C+ +  G P  P++ G F           L    LPT +  F  +  F    +SFSW++ + YF+
Sbjct:   14 DSAQIVTPFVRVGTYPTRNFATLGQLELLPPFTGASVAGSPVLRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCGGAPLLPKLRGYFAEFLRESCLAPLGILYLPTGV-GFGYRYPFVEGRSSFSWEYGMGYFS 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1413.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0010A4BC3C6.990e-5064.19uncharacterized protein LOC114741647 n=1 Tax=Proso... [more]
YCX91_PHAAO2.860e-4477.89Uncharacterized protein ORF91 n=6 Tax=Spermatophyt... [more]
A0A8J5E9C2_ZINOF4.020e-4379.00Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A5N5KVY8_9ROSI1.800e-4278.00Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A072UJ16_MEDTR6.270e-4279.79Signal anchor, putative n=1 Tax=Medicago truncatul... [more]
A0A8K0HCU7_9ROSA7.760e-4178.95Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A5N6N5S8_9ASTR9.780e-4180.00Uncharacterized protein n=6 Tax=Mesangiospermae Ta... [more]
A0A5D2G3G1_GOSDA4.630e-4074.74Uncharacterized protein n=1 Tax=Gossypium darwinii... [more]
A0A2N9EWN1_FAGSY1.120e-3979.35Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6P5NU31_ARADU2.100e-3956.85uncharacterized protein LOC110281477 n=1 Tax=Arach... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1413contigP-littoralis_Contig1413:20651..21143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog3880.AES84212
Model size493
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.58e-28
EggNOG OGs2E30T@1|root,2SA69@2759|Eukaryota,37XUE@33090|Viridiplantae,3GMF3@35493|Streptophyta,4JVFX@91835|fabids
DescriptionCell wall-associated hydrolase
Cds size195
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.9814487-UTR-P-littoralis_Contig1413:20650..209481680789663.9814487-UTR-P-littoralis_Contig1413:20650..20948Pylaiella littoralis U1_48UTRP-littoralis_Contig1413 20651..20948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.9979496-CDS-P-littoralis_Contig1413:20948..211431680789663.9979496-CDS-P-littoralis_Contig1413:20948..21143Pylaiella littoralis U1_48CDSP-littoralis_Contig1413 20949..21143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1413.3.1prot_P-littoralis_Contig1413.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1413 20949..21143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1413.3.1

>prot_P-littoralis_Contig1413.3.1 ID=prot_P-littoralis_Contig1413.3.1|Name=mRNA_P-littoralis_Contig1413.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
GLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVI
VTAAVHRGFSHQRR*
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mRNA from alignment at P-littoralis_Contig1413:20651..21143-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1413.3.1 ID=mRNA_P-littoralis_Contig1413.3.1|Name=mRNA_P-littoralis_Contig1413.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=493bp|location=Sequence derived from alignment at P-littoralis_Contig1413:20651..21143- (Pylaiella littoralis U1_48)
GGTCTTTCTGTCCTGGTGCAGGTAGTCCGCATCTTCACAGACAAGTCTAT
TTCACCGAGTCTCTCTCTGAGACAGTGTCCAAATCGTTACGCCTTTCGTG
CGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA
GTTACGGCCGCCGTTCACCGGGGCTTCAGTCATCAGCGTCGTTAATAACT
AACCAACTTCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACG
TTGTCTTACAACTTAGCGGAGACCTGTGTTTTTGGTAAACAGTCGCTTGG
ACCTTGTTATTGCAACCTAATAGGTACCCCTTCTCCCGAAGTTACAGGGT
TATTTTGCCGAGTTCCTTAGAGAGAGTTATCTCGCGCCCTTTGGTATACT
CTACCAACCCACCTGTGTCGGTTTAGAGTACAGGTATTCTTTACTTATGA
CAGTGCAAGCTTTTCTTGGAAGCATAACATCAACTACTTCAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1413:20651..21143-

>mRNA_P-littoralis_Contig1413.3.1 ID=mRNA_P-littoralis_Contig1413.3.1|Name=mRNA_P-littoralis_Contig1413.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig1413:20651..21143- (Pylaiella littoralis U1_48)
GGTCTTTCTGTCCTGGTGCAGGTAGTCCGCATCTTCACAGACAAGTCTAT
TTCACCGAGTCTCTCTCTGAGACAGTGTCCAAATCGTTACGCCTTTCGTG
CGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA
GTTACGGCCGCCGTTCACCGGGGCTTCAGTCATCAGCGTCGTTAA
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