mRNA_P-littoralis_Contig1411.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1411.4.1
Unique NamemRNA_P-littoralis_Contig1411.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 5.240e-62
Identity = 99/153 (64.71%), Postives = 114/153 (74.51%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMD--VGAGGDTSFHTLREELVDHFTYKKKRGDIVWFRSAAK*TK 453
            H+VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+AWFTACIIHNMLL FDGL  LE DM+W GKDGEAD TTG FPA T   S +  V    D +FH  R+ LVDHF + K   ++ WFR+    T+
Sbjct:  385 HRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADSAEDKVSGDDDAAFHAHRQCLVDHFAFAKSSSEVQWFRAVGADTR 537          
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 2.540e-61
Identity = 99/139 (71.22%), Postives = 112/139 (80.58%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTV---GSMDVGAGGDT-SFHTLREELVDHFTYKK 405
            H+VP LICP+K YAS  QQEWSKRFES+RKDIEC FGRLKGRFRLFKTGILF +REKIDNAWFTACIIHNML QFDGLANLEKD++W GKDGEAD+TTG FP  T V      +V  G +T +F   R++LV+H  YKK
Sbjct:  287 HRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGEADQTTGAFPVPTAVVDTAGEEVDDGDNTEAFKLFRQQLVNHVAYKK 425          
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 6.680e-60
Identity = 94/135 (69.63%), Postives = 105/135 (77.78%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMD--VGAGGDTSFHTLREELVDHFTY 399
            H+VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+AWFTACIIHNMLL FDGL  LE DM+W GKDGEAD TTG FPA T   S +  V    D +FH  R+ LVDHF +
Sbjct:  153 HRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADSAEDKVSGDDDAAFHAHRQCLVDHFAF 287          
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5KFT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT7_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.680e-37
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    7 VPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLE 246
            VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+A FTACIIHNMLL FDGL  LE
Sbjct:   56 VPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDACFTACIIHNMLLAFDGLDQLE 135          
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: D7FV01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV01_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 2.450e-35
Identity = 72/156 (46.15%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDVGAGGDTS-----------FHTLREELVDHFTYKKKRGDIVWFRSA 438
            ++PLL+ P KT+ S+E+   S+R ESVRKDIEC FGR+KGR+RLF+  I F SREKIDNAW TACI+HNML +F+GL  +E+D +W G  GE     G  P Q       VG G +             F   R +LV HF Y  +   + WF+ A
Sbjct:  150 KIPLLMPPIKTHNSIERHSCSRRMESVRKDIECCFGRVKGRWRLFRGNIPFGSREKIDNAWLTACILHNMLHKFNGLDEMEEDADWVGSAGEL----GDMPQQP------VGMGDEKEXXXXTETAAPGFDGFRAKLVAHFAYMWRIKQVFWFKRA 295          
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5JU81_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU81_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 4.840e-34
Identity = 68/149 (45.64%), Postives = 94/149 (63.09%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVG-SMDVGAGGD---TSFHTLREELVDHFTYKKKRGDIVWFRSA 438
            ++PLLI P KT+ +VE+  WS+R ES+RKDIEC FGR+KG +RLF   ILF++R K+DNAWFTACI+HNML  F+ L  +E+D +W G      E T        VG +MDV    +   + F   R +L+ HF    ++ +I+WF  A
Sbjct:  165 KIPLLIPPIKTHNTVEEHGWSRRLESMRKDIECCFGRVKGLWRLFGGDILFSTRPKVDNAWFTACILHNMLHSFNRLDEMEEDADWMGSAARLREAT-------AVGVAMDVDEESEPPTSGFEEFRRKLIAHFACAWEKKEILWFTRA 306          
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5KVL5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL5_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.100e-32
Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    7 VPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDVGAGGDTSFHTLREELVDHFTYKKKRGDIVWFRSA 438
            +PLLI P KT+ +VE+ +WS+R ES+RKDIEC FGR+KGR+RLF   +LF++R+K+DNAWFTACI+HNML  F+ L  +E+D  W G  G   E T          +MDV    +       E     F  + ++ +I+WF+ A
Sbjct:  159 IPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDMLFSTRQKVDNAWFTACILHNMLHSFNRLDEMEEDGVWVGSAGRLGEAT------AVAAAMDVDEESEAPTPGFEE-----FRREWEKKEILWFKRA 291          
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.480e-31
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNML 216
            H+VPLLICP+K YA+V +Q+WSKR ESVRKD+EC FGRLKGRFRLFKTGILF  R KID+A FTACIIH ML
Sbjct:  164 HRVPLLICPFKVYANVAEQQWSKRLESVRKDMECLFGRLKGRFRLFKTGILFGDRTKIDDARFTACIIHTML 235          
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.340e-29
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTG 267
            ++PLLI P K +A+VE+ +WS+R ES+RKDIEC +GR+KGRFRLFK GIL+ +R+ IDN WFTACI+HNML  +D L  + +   W G
Sbjct:  154 KIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILHNMLHHYDKLDVMTEATGWQG 241          
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5K7N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.450e-28
Identity = 64/139 (46.04%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDVGAGGDTSFHTLREELVDHFTYKKKRGDI 420
            ++PLLI P KT+ +VE+ +WS+R ES+RKDIEC FGR+KGR+RLF   ILF++R+K DNA FTACI+HNML  F+ L  +E+D +W G  G   E      A     +MDV    +T      E    H   +  R DI
Sbjct:  217 KIPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDILFSTRQKGDNACFTACILHNMLHSFNRLDEMEEDADWVGSAGRLGE------AAAVAAAMDVDEESETPTPDFEEX---HKRLESMRKDI 346          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0H2_9PHAE5.240e-6264.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE2.540e-6171.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRU1_9PHAE6.680e-6069.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFT7_9PHAE3.680e-3780.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV01_ECTSI2.450e-3546.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU81_9PHAE4.840e-3445.64DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVL5_9PHAE2.100e-3244.44DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JY35_9PHAE1.480e-3177.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K604_9PHAE4.340e-2957.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7N8_9PHAE2.450e-2846.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1411contigP-littoralis_Contig1411:19358..19864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size507
Hectar predicted targeting categoryother localisation
Exons1
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.5620832-UTR-P-littoralis_Contig1411:19357..195671680789663.5620832-UTR-P-littoralis_Contig1411:19357..19567Pylaiella littoralis U1_48UTRP-littoralis_Contig1411 19358..19567 +
1680789663.5812128-UTR-P-littoralis_Contig1411:19804..198641680789663.5812128-UTR-P-littoralis_Contig1411:19804..19864Pylaiella littoralis U1_48UTRP-littoralis_Contig1411 19805..19864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.5719206-CDS-P-littoralis_Contig1411:19567..198041680789663.5719206-CDS-P-littoralis_Contig1411:19567..19804Pylaiella littoralis U1_48CDSP-littoralis_Contig1411 19568..19804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1411.4.1prot_P-littoralis_Contig1411.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1411 19568..19804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1411.4.1

>prot_P-littoralis_Contig1411.4.1 ID=prot_P-littoralis_Contig1411.4.1|Name=mRNA_P-littoralis_Contig1411.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp
MLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDVGAGGDTSF
HTLREELVDHFTYKKKRGDIVWFRSAAK*
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mRNA from alignment at P-littoralis_Contig1411:19358..19864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1411.4.1 ID=mRNA_P-littoralis_Contig1411.4.1|Name=mRNA_P-littoralis_Contig1411.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig1411:19358..19864+ (Pylaiella littoralis U1_48)
CACCAGGTGCCCCTTCTCATATGCCCGTATAAAACGTATGCGAGCGTTGA ACAGCAGGAGTGGAGCAAGAGATTCGAGTCAGTACGCAAGGACATTGAGT GCTTTTTCGGAAGACTCAAGGGGCGGTTCAGGTTGTTCAAGACCGGCATT TTGTTCAACAGCCGGGAGAAGATCGACAACGCCTGGTTCACGGCTTGCAT CATTCACAACATGCTCCTGCAGTTCGACGGCCTGGCCAACCTTGAGAAGG ACATGAACTGGACGGGCAAGGATGGAGAGGCGGACGAGACCACCGGCCCT TTCCCCGCACAGACGACTGTTGGCAGCATGGATGTGGGAGCCGGCGGCGA CACTAGCTTCCACACGCTCAGGGAGGAACTAGTGGACCACTTCACATACA AGAAGAAGAGGGGGGATATTGTCTGGTTTCGGAGCGCGGCTAAATGAACA AAGTTCACGGTAGCGCAGAACCTGTGTTGTCCGGTAGGAGAATGGGTAGT CATTTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1411:19358..19864+

>mRNA_P-littoralis_Contig1411.4.1 ID=mRNA_P-littoralis_Contig1411.4.1|Name=mRNA_P-littoralis_Contig1411.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig1411:19358..19864+ (Pylaiella littoralis U1_48)
ATGCTCCTGCAGTTCGACGGCCTGGCCAACCTTGAGAAGGACATGAACTG
GACGGGCAAGGATGGAGAGGCGGACGAGACCACCGGCCCTTTCCCCGCAC
AGACGACTGTTGGCAGCATGGATGTGGGAGCCGGCGGCGACACTAGCTTC
CACACGCTCAGGGAGGAACTAGTGGACCACTTCACATACAAGAAGAAGAG
GGGGGATATTGTCTGGTTTCGGAGCGCGGCTAAATGA
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