mRNA_P-littoralis_Contig1411.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE) HSP 1 Score: 209 bits (531), Expect = 5.240e-62 Identity = 99/153 (64.71%), Postives = 114/153 (74.51%), Query Frame = 1
Query: 1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMD--VGAGGDTSFHTLREELVDHFTYKKKRGDIVWFRSAAK*TK 453
H+VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF R KID+AWFTACIIHNMLL FDGL LE DM+W GKDGEAD TTG FPA T S + V D +FH R+ LVDHF + K ++ WFR+ T+
Sbjct: 385 HRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADSAEDKVSGDDDAAFHAHRQCLVDHFAFAKSSSEVQWFRAVGADTR 537
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE) HSP 1 Score: 204 bits (519), Expect = 2.540e-61 Identity = 99/139 (71.22%), Postives = 112/139 (80.58%), Query Frame = 1
Query: 1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTV---GSMDVGAGGDT-SFHTLREELVDHFTYKK 405
H+VP LICP+K YAS QQEWSKRFES+RKDIEC FGRLKGRFRLFKTGILF +REKIDNAWFTACIIHNML QFDGLANLEKD++W GKDGEAD+TTG FP T V +V G +T +F R++LV+H YKK
Sbjct: 287 HRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGEADQTTGAFPVPTAVVDTAGEEVDDGDNTEAFKLFRQQLVNHVAYKK 425
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE) HSP 1 Score: 196 bits (499), Expect = 6.680e-60 Identity = 94/135 (69.63%), Postives = 105/135 (77.78%), Query Frame = 1
Query: 1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMD--VGAGGDTSFHTLREELVDHFTY 399
H+VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF R KID+AWFTACIIHNMLL FDGL LE DM+W GKDGEAD TTG FPA T S + V D +FH R+ LVDHF +
Sbjct: 153 HRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADSAEDKVSGDDDAAFHAHRQCLVDHFAF 287
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5KFT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT7_9PHAE) HSP 1 Score: 135 bits (339), Expect = 3.680e-37 Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query: 7 VPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLE 246
VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF R KID+A FTACIIHNMLL FDGL LE
Sbjct: 56 VPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDACFTACIIHNMLLAFDGLDQLE 135
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: D7FV01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV01_ECTSI) HSP 1 Score: 134 bits (336), Expect = 2.450e-35 Identity = 72/156 (46.15%), Postives = 93/156 (59.62%), Query Frame = 1
Query: 4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDVGAGGDTS-----------FHTLREELVDHFTYKKKRGDIVWFRSA 438
++PLL+ P KT+ S+E+ S+R ESVRKDIEC FGR+KGR+RLF+ I F SREKIDNAW TACI+HNML +F+GL +E+D +W G GE G P Q VG G + F R +LV HF Y + + WF+ A
Sbjct: 150 KIPLLMPPIKTHNSIERHSCSRRMESVRKDIECCFGRVKGRWRLFRGNIPFGSREKIDNAWLTACILHNMLHKFNGLDEMEEDADWVGSAGEL----GDMPQQP------VGMGDEKEXXXXTETAAPGFDGFRAKLVAHFAYMWRIKQVFWFKRA 295
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5JU81_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU81_9PHAE) HSP 1 Score: 130 bits (328), Expect = 4.840e-34 Identity = 68/149 (45.64%), Postives = 94/149 (63.09%), Query Frame = 1
Query: 4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVG-SMDVGAGGD---TSFHTLREELVDHFTYKKKRGDIVWFRSA 438
++PLLI P KT+ +VE+ WS+R ES+RKDIEC FGR+KG +RLF ILF++R K+DNAWFTACI+HNML F+ L +E+D +W G E T VG +MDV + + F R +L+ HF ++ +I+WF A
Sbjct: 165 KIPLLIPPIKTHNTVEEHGWSRRLESMRKDIECCFGRVKGLWRLFGGDILFSTRPKVDNAWFTACILHNMLHSFNRLDEMEEDADWMGSAARLREAT-------AVGVAMDVDEESEPPTSGFEEFRRKLIAHFACAWEKKEILWFTRA 306
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5KVL5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL5_9PHAE) HSP 1 Score: 126 bits (316), Expect = 2.100e-32 Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 7 VPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDVGAGGDTSFHTLREELVDHFTYKKKRGDIVWFRSA 438
+PLLI P KT+ +VE+ +WS+R ES+RKDIEC FGR+KGR+RLF +LF++R+K+DNAWFTACI+HNML F+ L +E+D W G G E T +MDV + E F + ++ +I+WF+ A
Sbjct: 159 IPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDMLFSTRQKVDNAWFTACILHNMLHSFNRLDEMEEDGVWVGSAGRLGEAT------AVAAAMDVDEESEAPTPGFEE-----FRREWEKKEILWFKRA 291
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE) HSP 1 Score: 122 bits (307), Expect = 1.480e-31 Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNML 216
H+VPLLICP+K YA+V +Q+WSKR ESVRKD+EC FGRLKGRFRLFKTGILF R KID+A FTACIIH ML
Sbjct: 164 HRVPLLICPFKVYANVAEQQWSKRLESVRKDMECLFGRLKGRFRLFKTGILFGDRTKIDDARFTACIIHTML 235
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE) HSP 1 Score: 116 bits (291), Expect = 4.340e-29 Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTG 267
++PLLI P K +A+VE+ +WS+R ES+RKDIEC +GR+KGRFRLFK GIL+ +R+ IDN WFTACI+HNML +D L + + W G
Sbjct: 154 KIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILHNMLHHYDKLDVMTEATGWQG 241
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Match: A0A6H5K7N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N8_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.450e-28 Identity = 64/139 (46.04%), Postives = 85/139 (61.15%), Query Frame = 1
Query: 4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDVGAGGDTSFHTLREELVDHFTYKKKRGDI 420
++PLLI P KT+ +VE+ +WS+R ES+RKDIEC FGR+KGR+RLF ILF++R+K DNA FTACI+HNML F+ L +E+D +W G G E A +MDV +T E H + R DI
Sbjct: 217 KIPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDILFSTRQKGDNACFTACILHNMLHSFNRLDEMEEDADWVGSAGRLGE------AAAVAAAMDVDEESETPTPDFEEX---HKRLESMRKDI 346 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1411.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1411.4.1 >prot_P-littoralis_Contig1411.4.1 ID=prot_P-littoralis_Contig1411.4.1|Name=mRNA_P-littoralis_Contig1411.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp MLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDVGAGGDTSFback to top mRNA from alignment at P-littoralis_Contig1411:19358..19864+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1411.4.1 ID=mRNA_P-littoralis_Contig1411.4.1|Name=mRNA_P-littoralis_Contig1411.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig1411:19358..19864+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1411:19358..19864+ >mRNA_P-littoralis_Contig1411.4.1 ID=mRNA_P-littoralis_Contig1411.4.1|Name=mRNA_P-littoralis_Contig1411.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig1411:19358..19864+ (Pylaiella littoralis U1_48)back to top |