mRNA_P-littoralis_Contig1411.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1411.3.1
Unique NamemRNA_P-littoralis_Contig1411.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.680e-20
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 LMSQSTAEKSFQRFCDCFAGGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSL 162
            LMS++TAE+SF RFC CFA GLW  W+RLPEG+DL++VES Y  LG+PGAVGS+
Sbjct:   27 LMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEDLRRVESTYRSLGYPGAVGSI 80
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BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.930e-19
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    4 MSQSTAEKSFQRFCDCFAGGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSL 162
            MS++TAE+SF RFC CFA GLW  W+RLPEG+DL++VES Y  LG+PGAVGS+
Sbjct:    1 MSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEDLRRVESTYRSLGYPGAVGSI 53
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BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.710e-18
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 LMSQSTAEKSFQRFCDCFAGGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSL 162
            LMS++TAE+SF RFC CFA GLW  W+RLPEG+ L++VES Y  LG+PGAVGS+
Sbjct:  232 LMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPGAVGSI 285
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BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Match: A0A6H5K1K5_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.820e-14
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    4 MSQSTAEKSFQRFCDCFAGGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGS 159
            MS +TAEKSF  FC+ F+  LW  WV+LP GD+LK+VE ++ + G+PGA+GS
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAIGS 52
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BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Match: A0A6H5JJM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.510e-14
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    4 MSQSTAEKSFQRFCDCFAGGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGS 159
            MS +TAEKSF  FC+ F+  LW  WV+LP GD+LK+VE ++ + G+PGA+GS
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPIGDELKEVERVFRKSGYPGAIGS 52
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BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Match: A0A6H5KW69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW69_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.570e-14
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    4 MSQSTAEKSFQRFCDCFAGGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGS 159
            MS +TAEKSF  FC+ F+  LW  WV+LP GD+LK+VE ++ + G+PGA+GS
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAIGS 52
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BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.920e-13
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 MSQSTAEKSFQRFCDCFAGGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGS 159
            MS +TAEKSF  FC+ F+  LW  WV+LP GD+LK+VE ++ + G+PGA+ S
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAISS 52
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BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Match: A0A6H5KBC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC8_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.210e-12
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 MSQSTAEKSFQRFCDCFAGGLWHQWVRLPEGDDLKQVESIYNQLGFPG 147
            MS +TAEKSF  FC+ F+  LW  WV+LP GD+LK+VE ++ + G+PG
Sbjct:   94 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPG 141
[Close]
BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.780e-9
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 3 
Query:  135 GFSGGRRVADCTHVAWERCAYSETNIHKGKEGYTSVVFEAIC 260
            G  G     DCTH++W  C +SETN HKGKEGYT++V+EA C
Sbjct:  179 GCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASC 220
[Close]
BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Match: A0A6H5KEH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.360e-7
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 3 
Query:  135 GFSGGRRVADCTHVAWERCAYSETNIHKGKEGYTSVVFEAIC 260
            G  G     DCTH++W  C +SETN HKGKEG T++V+EA C
Sbjct:  147 GCPGAVASVDCTHISWPACPFSETNTHKGKEGDTTLVYEASC 188
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1411.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JY35_9PHAE1.680e-2068.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRU1_9PHAE1.930e-1967.92Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L0H2_9PHAE1.710e-1866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K5_9PHAE2.820e-1455.77Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM8_9PHAE3.510e-1455.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW69_9PHAE4.570e-1455.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K604_9PHAE7.920e-1353.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBC8_9PHAE5.210e-1254.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE6.780e-957.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEH6_9PHAE1.360e-754.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1411contigP-littoralis_Contig1411:18075..18335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5297.GMQ_16114T0
Model size263
Max annot lvl5297.GMQ_16114T0|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.04e-06
EggNOG OGs28IUF@1|root,2QR5Z@2759|Eukaryota
DescriptionPlant transposon protein
Cds size258
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.515156-UTR-P-littoralis_Contig1411:18074..180771680789663.515156-UTR-P-littoralis_Contig1411:18074..18077Pylaiella littoralis U1_48UTRP-littoralis_Contig1411 18075..18077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.5320368-CDS-P-littoralis_Contig1411:18077..183351680789663.5320368-CDS-P-littoralis_Contig1411:18077..18335Pylaiella littoralis U1_48CDSP-littoralis_Contig1411 18078..18335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1411.3.1prot_P-littoralis_Contig1411.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1411 18078..18335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1411.3.1

>prot_P-littoralis_Contig1411.3.1 ID=prot_P-littoralis_Contig1411.3.1|Name=mRNA_P-littoralis_Contig1411.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MSQSTAEKSFQRFCDCFAGGLWHQWVRLPEGDDLKQVESIYNQLGFPGAV
GSLTAPTWRGSVVLIRKRISTRGRRGTRRLCSRRFV
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mRNA from alignment at P-littoralis_Contig1411:18075..18335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1411.3.1 ID=mRNA_P-littoralis_Contig1411.3.1|Name=mRNA_P-littoralis_Contig1411.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1411:18075..18335+ (Pylaiella littoralis U1_48)
CTGATGAGCCAATCTACGGCGGAGAAGTCCTTTCAACGTTTCTGCGACTG
CTTCGCGGGGGGCTTGTGGCATCAGTGGGTTCGGCTGCCTGAGGGCGATG
ACCTCAAGCAAGTGGAGAGCATCTACAACCAGCTGGGTTTTCCGGGGGCC
GTAGGGTCGCTGACTGCACCCACGTGGCGTGGGAGCGTTGTGCTTATTCG
GAAACGAATATCCACAAGGGGAAGGAGGGGTACACGTCGGTTGTGTTCGA
GGCGATTTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1411:18075..18335+

>mRNA_P-littoralis_Contig1411.3.1 ID=mRNA_P-littoralis_Contig1411.3.1|Name=mRNA_P-littoralis_Contig1411.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1411:18075..18335+ (Pylaiella littoralis U1_48)
ATGAGCCAATCTACGGCGGAGAAGTCCTTTCAACGTTTCTGCGACTGCTT
CGCGGGGGGCTTGTGGCATCAGTGGGTTCGGCTGCCTGAGGGCGATGACC
TCAAGCAAGTGGAGAGCATCTACAACCAGCTGGGTTTTCCGGGGGCCGTA
GGGTCGCTGACTGCACCCACGTGGCGTGGGAGCGTTGTGCTTATTCGGAA
ACGAATATCCACAAGGGGAAGGAGGGGTACACGTCGGTTGTGTTCGAGGC
GATTTGTG
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